View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14820_low_10 (Length: 332)

Name: NF14820_low_10
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14820_low_10
NF14820_low_10
[»] chr3 (10 HSPs)
chr3 (90-316)||(19415764-19415993)
chr3 (150-316)||(17943534-17943701)
chr3 (7-64)||(19415991-19416048)
chr3 (14-72)||(17943778-17943836)
chr3 (271-316)||(18148398-18148443)
chr3 (240-316)||(19438511-19438587)
chr3 (150-205)||(18105170-18105228)
chr3 (24-94)||(19382783-19382853)
chr3 (150-193)||(16679012-16679056)
chr3 (150-189)||(18148510-18148550)
[»] chr6 (2 HSPs)
chr6 (98-209)||(13665001-13665102)
chr6 (267-311)||(13665317-13665361)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 90 - 316
Target Start/End: Complemental strand, 19415993 - 19415764
Alignment:
Q  90 ccatttcatgactttgtttggaaaattatatccacaatcttctgtcacagccataatcattaatcacctgataaatatgaagcaaatgcaatggatataa 189  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19415993 ccatttgatgactttgtttggaaaattatatacacgatcttctgtcacagccataatcattaatcacctgataattatgaagcaaatgcaatggatataa 19415894  T
Q  190 gttaaatggaattatataat---nnnnnnnnntaatctatgaaatgatcaataaaacttatcatctgttcagttatgaataacaaaatactctatagtct 286  Q
    ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19415893 gttaaatggaattatataataaaaaaaaaaaataatctatgaaatgatcaataaaacttatcatctgttcagttatgaataacaaaatactctatagtct 19415794  T
Q  287 aatcaatgaaattgtgaggtaggttaaact 316  Q
    ||||||||||||||||||||||||| ||||    
T  19415793 aatcaatgaaattgtgaggtaggtttaact 19415764  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 17943701 - 17943534
Alignment:
Q  150 taatcacctgataaatatgaagcaaatgcaatggatataagttaaatggaattatataatnnnnnnnnn-taatctatgaaatgatcaataaaacttatc 248  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  17943701 taatcacctgataaatatgaggcaaatgcaatggatataagttaaatggaattatataataaaacaaaaataatctatgaaatgatcaataaaacttatc 17943602  T
Q  249 atctgttcagttatgaataacaaaatactctatagtctaatcaatgaaattgtgaggtaggttaaact 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||  |||||| ||||    
T  17943601 atctgttcagttatgaataacaaaatactctatagtctaatcaatgtaactgtgaaataggtttaact 17943534  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 19416048 - 19415991
Alignment:
Q  7 cataggaaacactgtccaaaattaaggagggagatacatgatgtgaggacaagcccca 64  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19416048 cataagaaacactgtccaaaattaaggagggagatacatgatgtgaggacaagcccca 19415991  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 17943836 - 17943778
Alignment:
Q  14 aacactgtccaaaattaaggagggagatacatgatgtgaggacaagccccaataacagt 72  Q
    |||||||||||||||||| |||||||||||||||  ||||||||| |||||| ||||||    
T  17943836 aacactgtccaaaattaaagagggagatacatgagatgaggacaatccccaagaacagt 17943778  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 18148443 - 18148398
Alignment:
Q  271 aaatactctatagtctaatcaatgaaattgtgaggtaggttaaact 316  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  18148443 aaatactctgtagtctaatcaatgaaactgtgaggtaggtttaact 18148398  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 316
Target Start/End: Complemental strand, 19438587 - 19438511
Alignment:
Q  240 aaacttatcatctgttcagttatgaataacaaaatactctatagtctaatcaatgaaattgtgaggtaggttaaact 316  Q
    |||||| |||| |||| | |||||||| | ||||||||||| |||| ||||||||||| |||||| |||||| ||||    
T  19438587 aaacttgtcatgtgttaaattatgaatcataaaatactctacagtcaaatcaatgaaactgtgagataggtttaact 19438511  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 18105228 - 18105170
Alignment:
Q  150 taatcacctgataaa-tatgaagcaaatgcaatggatataa--gttaaatggaattata 205  Q
    ||||||||||||||| ||||||||||||||||| |||||||   |||||||||||||||    
T  18105228 taatcacctgataaaatatgaagcaaatgcaattgatataacttttaaatggaattata 18105170  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 19382853 - 19382783
Alignment:
Q  24 aaaattaaggagggagatacatgatgtgaggacaagccccaataacagttgacaaaatgaatgcaaccatt 94  Q
    |||||||||||| ||||||||||| ||| || ||||||| || ||||  | |||||||||||| |||||||    
T  19382853 aaaattaaggagagagatacatgaggtgtggccaagcccaaagaacaacttacaaaatgaatgtaaccatt 19382783  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 16679056 - 16679012
Alignment:
Q  150 taatcacctgataaa-tatgaagcaaatgcaatggatataagtta 193  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||    
T  16679056 taatcacctgagaaaatatgaagcaaatgaaatggatataagtta 16679012  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 18148550 - 18148510
Alignment:
Q  150 taatcacctgataaa-tatgaagcaaatgcaatggatataa 189  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  18148550 taatcacctgataaaatatgaagcaaatgcaattgatataa 18148510  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 13665001 - 13665102
Alignment:
Q  98 tgactttgtttggaaaattatatccacaatcttctgtcacagccataatcattaatcacctgataaatatgaagcaaatgcaatggatataagttaaatg 197  Q
    ||||||||||||||||||| ||||||| ||||   ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  13665001 tgactttgtttggaaaattttatccacgatct---gtcacagccataat-------cacctgataaatatgaagcaaatgcaatggatataagttaaatg 13665090  T
Q  198 gaattatataat 209  Q
    ||||||||||||    
T  13665091 gaattatataat 13665102  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 13665317 - 13665361
Alignment:
Q  267 aacaaaatactctatagtctaatcaatgaaattgtgaggtaggtt 311  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||    
T  13665317 aacaaaatattctatagtctaatcaatgaaactgtgaagtaggtt 13665361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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