View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14820_low_11 (Length: 330)

Name: NF14820_low_11
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14820_low_11
NF14820_low_11
[»] chr7 (27 HSPs)
chr7 (183-316)||(660874-661007)
chr7 (115-316)||(22069953-22070154)
chr7 (117-316)||(22080712-22080911)
chr7 (115-316)||(22063484-22063685)
chr7 (123-312)||(20351945-20352134)
chr7 (179-316)||(22100399-22100536)
chr7 (115-312)||(20361233-20361430)
chr7 (115-308)||(20374538-20374731)
chr7 (115-316)||(6864834-6865034)
chr7 (207-310)||(20361064-20361167)
chr7 (50-156)||(22088373-22088476)
chr7 (241-316)||(9807792-9807867)
chr7 (115-162)||(16839562-16839609)
chr7 (115-310)||(20140851-20141046)
chr7 (116-250)||(20126277-20126415)
chr7 (207-312)||(20133348-20133453)
chr7 (207-312)||(20338858-20338963)
chr7 (35-82)||(6865064-6865111)
chr7 (115-162)||(16846645-16846692)
chr7 (120-162)||(18326068-18326110)
chr7 (272-310)||(19344608-19344646)
chr7 (273-315)||(29899374-29899416)
chr7 (235-316)||(19351096-19351177)
chr7 (279-312)||(19604494-19604527)
chr7 (236-316)||(13416938-13417018)
chr7 (272-312)||(14076677-14076717)
chr7 (272-312)||(14386705-14386745)
[»] chr4 (7 HSPs)
chr4 (123-316)||(11971009-11971202)
chr4 (201-315)||(11981711-11981825)
chr4 (235-316)||(53774802-53774883)
chr4 (273-316)||(3565744-3565787)
chr4 (235-297)||(10464231-10464293)
chr4 (235-297)||(10475169-10475231)
chr4 (272-316)||(35767017-35767061)
[»] chr1 (2 HSPs)
chr1 (117-312)||(15961072-15961267)
chr1 (273-316)||(39379088-39379131)
[»] scaffold0867 (1 HSPs)
scaffold0867 (179-316)||(4696-4833)
[»] chr6 (3 HSPs)
chr6 (225-315)||(20770602-20770692)
chr6 (272-312)||(6921381-6921421)
chr6 (272-312)||(6954550-6954590)
[»] chr2 (7 HSPs)
chr2 (224-316)||(18908836-18908928)
chr2 (226-293)||(1826329-1826395)
chr2 (273-316)||(20699467-20699510)
chr2 (225-261)||(554428-554464)
chr2 (272-316)||(18913584-18913628)
chr2 (272-316)||(18920792-18920836)
chr2 (272-312)||(20975557-20975597)
[»] scaffold0649 (1 HSPs)
scaffold0649 (273-316)||(5438-5481)
[»] chr8 (2 HSPs)
chr8 (239-316)||(27618457-27618534)
chr8 (275-312)||(29390288-29390325)
[»] chr5 (2 HSPs)
chr5 (275-316)||(23086784-23086825)
chr5 (242-310)||(29597585-29597653)
[»] chr3 (2 HSPs)
chr3 (272-316)||(25901306-25901350)
chr3 (272-316)||(25915324-25915368)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 661007 - 660874
Alignment:
Q  183 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  661007 ctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaaactcgttttgttat 660908  T
Q  283 atggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||||||||||||||||||||||    
T  660907 atggcagatgaaggaatttcgagttgaagagtct 660874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 316
Target Start/End: Original strand, 22069953 - 22070154
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 214  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||| ||| || ||||  | |||||||  |||||| | ||| ||||||||||||||    
T  22069953 tactattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggtttcgatgaagtgccatttgttata 22070052  T
Q  215 ccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagt 314  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||||| | | |||||| |||||||||| |||||| ||||| ||||| ||||||    
T  22070053 ccaaatctaagtgttttaaaggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagt 22070152  T
Q  315 ct 316  Q
    ||    
T  22070153 ct 22070154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 117 - 316
Target Start/End: Original strand, 22080712 - 22080911
Alignment:
Q  117 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 216  Q
    ||||||| |||||| |||||||||||||| |||||||||||||||| ||| || |||| |  |||||||   |||||   ||| | || |||||||||||    
T  22080712 ctattgaacaatttatgattatttcacttgatttgggcaccgagacacatgctaagtttcggcctcctcacagtttcgttgaagttccctttgttatacc 22080811  T
Q  217 aaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||||||||| | |||||| |||||||||| |||||| ||||| ||||| ||||||||    
T  22080812 aaatctaagtatgttaaaggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtct 22080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 316
Target Start/End: Original strand, 22063484 - 22063685
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 214  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||| |  || || | ||  | |||||||  ||||||   ||| | ||||||||||||    
T  22063484 tactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggtttcagtgaagtaccatttgttata 22063583  T
Q  215 ccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagt 314  Q
    ||||| |||||||| ||||| |||| ||||||||||| ||| |||||||||||| | ||||||||||||||||| |||||||||||| || || ||||||    
T  22063584 ccaaaactaagtgtcttaaatgattatctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaagagt 22063683  T
Q  315 ct 316  Q
    ||    
T  22063684 ct 22063685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 20351945 - 20352134
Alignment:
Q  123 agcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttataccaaatct 222  Q
    ||||||||||||| ||||| ||| |||||| ||| || |||||||||  | |  | || |||| |||||||  |||| ||||| | ||| ||||| ||||    
T  20351945 agcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaagtgccaatcgttgtaccatatct 20352044  T
Q  223 aagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    |||||||||||||||||||||||||||||  || |||| ||||||| | |||||||| |||||| | |||||||||||| ||||||||||    
T  20352045 aagtgtgttaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaaggaatttggagttgaaga 20352134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 22100399 - 22100536
Alignment:
Q  179 cctcctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttg 278  Q
    |||||||  |||||| | ||| ||||| |||||||||| ||||||||||| ||||| |||| ||||||||||| ||| ||||||||| || | ||||||     
T  22100399 cctcctcatggtttcaatgaagtgccaattgttatacctaatctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcatttta 22100498  T
Q  279 ttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    |||||||||| |||||| ||||| ||||| ||||||||    
T  22100499 ttatatggcaaatgaagaaatttggagttcaagagtct 22100536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 312
Target Start/End: Complemental strand, 20361430 - 20361233
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 214  Q
    ||||||| | ||||||||||| ||||| ||| ||||||||||||| |||| |||| |  |  | || |||| |||||||   ||| ||||| ||||| ||    
T  20361430 tactattcatcaatttgtgatcatttctcttgatttgggcaccgaaacgctttctcaacttttgccacctcaaggtttcacggaagtgccaattgttgta 20361331  T
Q  215 ccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||| ||||||||||| |||||||||||||||||||||  || |||| ||||||| | |||||||| || | | | || ||||||||| ||||||||||    
T  20361330 ccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtgatttaggaaataaaggaatttggagttgaaga 20361233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 308
Target Start/End: Complemental strand, 20374731 - 20374538
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 214  Q
    ||||||| |||||||| | |||||||| ||| ||||||| || || || |||||| || |  | ||||||| ||| |||   ||| ||||  |||||  |    
T  20374731 tactattcagcaatttatcattatttctcttgatttgggtactgaaacacattctcagcttttgcctcctcaaggcttcatggaagtgccgattgttgca 20374632  T
Q  215 ccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttg 308  Q
    ||| ||||||||||| |||||||||||||||||||||  || |||| ||||||| | |||||||| |||||| | |||||||||||| ||||||    
T  20374631 ccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgggaaatgaaggaatttggagttg 20374538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 316
Target Start/End: Complemental strand, 6865034 - 6864834
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactc-cctcctcgaggtttccaagaaatgccatttgttat 213  Q
    ||||||||||||||||| ||||||||||||| |||||| |||  |||  ||| ||  |||  || |||||||  ||||||   ||| ||||| |||||      
T  6865034 tactattgagcaatttgagattatttcacttcatttggacactaagatacatactc-gtttgtctcctcctcagggtttcattgaagtgccaattgttgc 6864936  T
Q  214 accaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagag 313  Q
     ||||||||||| ||||||||||||||||| | ||||| ||| |||||||||||| | || ||||| ||||||   |||||||||||| |||||||||||    
T  6864935 cccaaatctaagcgtgttaaaggattgtctctatttttctcatgatttcaaacaaactca-tttgtaatatggttaatgaaggaatttggagttgaagag 6864837  T
Q  314 tct 316  Q
    |||    
T  6864836 tct 6864834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 20361064 - 20361167
Alignment:
Q  207 ttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagt 306  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||  || |||| ||||||| | ||||||||  ||||  | |||||||||||| ||||    
T  20361064 ttgttgtaccatatctaagtgtgttagaggattgtctttgtttttcacatgattacaaacaaactcattttgtattatgagaaatgaaggaatttggagt 20361163  T
Q  307 tgaa 310  Q
    ||||    
T  20361164 tgaa 20361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 22088373 - 22088476
Alignment:
Q  50 ggtagttttaattggttggcaattcgcaattacaacgacgaggactacgaatgcaaggatattgatactattgagcaatttgtgattatttcacttaatt 149  Q
    |||||| |||||||||||||||||| ||||||||  |  || || ||  | ||||||| ||||   |||||||||||||||||||||||||||||| |||    
T  22088373 ggtagtgttaattggttggcaattcacaattacattggtgatgattataattgcaagggtatt---actattgagcaatttgtgattatttcacttgatt 22088469  T
Q  150 tgggcac 156  Q
    |||||||    
T  22088470 tgggcac 22088476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 9807792 - 9807867
Alignment:
Q  241 tctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||| ||||| ||  || |  |||| |||||||||||||||||||||||| ||||||||||||||    
T  9807792 tctttgtttttgtcatgatttgaagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtct 9807867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 16839609 - 16839562
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 162  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||    
T  16839609 tactgttgagcaatttgtgattatttcacttgatttgggcacggagac 16839562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 310
Target Start/End: Complemental strand, 20141046 - 20140851
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttata 214  Q
    |||| |||| |||||||||||| |||| ||| |||||||||||||||| |||||| |  |    ||||||  |||||||  |||| | ||  || || ||    
T  20141046 tactcttgaccaatttgtgattgtttctctttatttgggcaccgagacacattctcaactttcgcctcctataggtttcagagaagtcccgatttttgta 20140947  T
Q  215 ccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaa 310  Q
    ||| |||||||| ||||||||||   |||||||||||   | |||| ||||||| | ||||| ||  ||||||| |||||||||||| ||||||||    
T  20140946 ccatatctaagtttgttaaaggacaatctttgtttttcatatgattacaaacaaactcatttggtagtatggcaaatgaaggaatttggagttgaa 20140851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 20126415 - 20126277
Alignment:
Q  116 actattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgc----catttgtt 211  Q
    |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||| || | || || |||| |||||||   ||| | |    |  |||||    
T  20126415 actattcagcaatttgtgattatttcccttgacttgggcactgagacacattctcagcttctgccacctcaaggtttcactgaagtacgtagcgattgtt 20126316  T
Q  212 ataccaaatctaagtgtgttaaaggattgtctttgtttt 250  Q
     |||||||| |||||||||||||||| ||||||||||||    
T  20126315 gtaccaaatataagtgtgttaaaggactgtctttgtttt 20126277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 312
Target Start/End: Complemental strand, 20133453 - 20133348
Alignment:
Q  207 ttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagt 306  Q
    ||||| ||||| |||||||| |||||||||||||  | |||||||  || |||| ||||||| | ||||| ||  ||||||| ||||| |||||| ||||    
T  20133453 ttgttgtaccatatctaagtttgttaaaggattgcatgtgtttttcacatgattacaaacaaactcatttggtagtatggcaaatgaaagaatttggagt 20133354  T
Q  307 tgaaga 312  Q
    ||||||    
T  20133353 tgaaga 20133348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 20338858 - 20338963
Alignment:
Q  207 ttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagt 306  Q
    ||||| |||||||| ||||||||||||| || | |||||||||||  || |||| | || || | |||||||| |||||| | |||||||||||  ||||    
T  20338858 ttgttgtaccaaatttaagtgtgttaaacgactatctttgtttttcccatgattaccaaaaaactcattttgtaatatggaaaatgaaggaattaggagt 20338957  T
Q  307 tgaaga 312  Q
    ||||||    
T  20338958 tgaaga 20338963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 6865111 - 6865064
Alignment:
Q  35 gttgttcatcttagtggtagttttaattggttggcaattcgcaattac 82  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||||    
T  6865111 gttgtgcatcttggtggtagtgttacttggttggcaattcgcaattac 6865064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 16846692 - 16846645
Alignment:
Q  115 tactattgagcaatttgtgattatttcacttaatttgggcaccgagac 162  Q
    |||| |||||||||||||||||||||| ||| |||||||||| |||||    
T  16846692 tactgttgagcaatttgtgattatttctcttgatttgggcacggagac 16846645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 18326068 - 18326110
Alignment:
Q  120 ttgagcaatttgtgattatttcacttaatttgggcaccgagac 162  Q
    |||||||||||| ||||||||||||| |||||||||| |||||    
T  18326068 ttgagcaatttgcgattatttcacttgatttgggcacggagac 18326110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 19344646 - 19344608
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaa 310  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  19344646 cattttgttatatggcagatgatggaatttggagttgaa 19344608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 29899374 - 29899416
Alignment:
Q  273 attttgttatatggcagatgaaggaatttcgagttgaagagtc 315  Q
    ||||||||||||||||||||||| ||||| | |||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtc 29899416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 19351177 - 19351096
Alignment:
Q  235 ggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||| ||||||| |||| || |||||    | ||||||||| |||||||||||| ||||||| ||||||| ||||||    
T  19351177 ggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtct 19351096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 19604527 - 19604494
Alignment:
Q  279 ttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||||||||||||||||||||| ||||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaaga 19604494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 13417018 - 13416938
Alignment:
Q  236 gattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    |||||||||||||||| | | ||||| ||  || |  ||||| | |||||||| |||||||||||| ||||||||||||||    
T  13417018 gattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagagtct 13416938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 14076677 - 14076717
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaaga 14076717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 14386705 - 14386745
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaaga 14386745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 316
Target Start/End: Complemental strand, 11971202 - 11971009
Alignment:
Q  123 agcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttataccaaatct 222  Q
    ||||||||||||||||||||||| |||| ||||| ||||   || || |||| |  ||||||| ||| ||  |  |  |||||||| |||| ||||||||    
T  11971202 agcaatttgtgattatttcacttgattttggcactgagaaatatactcagttgcgacctcctcaaggatttgatcaggtgccatttcttatgccaaatct 11971103  T
Q  223 aagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||| |||||| |||||||||||||||||| ||| |||||  ||||| | ||||||||||||||||| |||||||||||| |||| |||||||||    
T  11971102 aagcgtgttagaggattgtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaatgaaggaatttggagtggaagagtct 11971009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 11981825 - 11981711
Alignment:
Q  201 tgccatttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatt 300  Q
    |||||||| || | |||||| ||||||||||| |||||||||||||||||| ||| |||||  ||||| | ||||||||||||||||| |||||||||||    
T  11981825 tgccatttcttgtgccaaatgtaagtgtgttacaggattgtctttgtttttctcatgattttcaacaaactcattttgttatatggcaaatgaaggaatt 11981726  T
Q  301 tcgagttgaagagtc 315  Q
    | |||| ||||||||    
T  11981725 tggagtggaagagtc 11981711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 53774802 - 53774883
Alignment:
Q  235 ggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||| ||||||||| | | ||||| ||| || | ||||||||||||||||| |||||||||||| ||||||||||||||    
T  53774802 ggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtct 53774883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 3565744 - 3565787
Alignment:
Q  273 attttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||    
T  3565744 attttattatatggcagatgaaggaatttggggttgaagagtct 3565787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 10464231 - 10464293
Alignment:
Q  235 ggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaagga 297  Q
    ||||||||||||||||||| | |||||| || |  | ||||||||||||||||| ||||||||    
T  10464231 ggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10464293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 10475169 - 10475231
Alignment:
Q  235 ggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaagga 297  Q
    ||||||||||||||||||| | |||||| || |  | ||||||||||||||||| ||||||||    
T  10475169 ggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaagga 10475231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 35767017 - 35767061
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||| ||||| | |||||| ||||||||||||||    
T  35767017 cattttgttatatggaagatggaagaatttggagttgaagagtct 35767061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 117 - 312
Target Start/End: Original strand, 15961072 - 15961267
Alignment:
Q  117 ctattgagcaatttgtgattatttcacttaatttgggcaccgagacgcattctgagttactccctcctcgaggtttccaagaaatgccatttgttatacc 216  Q
    ||||||| || ||||||||| |||||||| |||||||||| ||||| ||| || ||||    ||||||  ||||||| | ||| | |||| ||||| |||    
T  15961072 ctattgaacattttgtgattgtttcacttgatttgggcactgagacacatactcagttggcacctcctaaaggtttcaatgaagttccatatgttaaacc 15961171  T
Q  217 aaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||||||||||||||||  ||||||||||||||| ||| || ||||||||| ||||| | ||||||||| | |||||| ||||| ||| ||||||    
T  15961172 aaatctaagtgtgttaaataattgtctttgtttttctcatgacttcaaacaaacacatatggttatatggaaaatgaagaaatttggagctgaaga 15961267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 39379131 - 39379088
Alignment:
Q  273 attttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtct 39379088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 4833 - 4696
Alignment:
Q  179 cctcctcgaggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttg 278  Q
    |||||||  |||||| | ||| ||||| |||||||||| ||||||||||| ||||| |||| ||||||||||| ||| ||||||||| || | ||||||     
T  4833 cctcctcatggtttcaatgaagtgccaattgttatacctaatctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcatttta 4734  T
Q  279 ttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    |||||||||| |||||| ||||| ||||| ||||||||    
T  4733 ttatatggcaaatgaagaaatttggagttcaagagtct 4696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 20770602 - 20770692
Alignment:
Q  225 gtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtc 315  Q
    ||||||| | ||||||| ||||||||| ||| ||| | ||| || |  |||||||||||||||| |||||||||||| || ||||||||||    
T  20770602 gtgtgttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtc 20770692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 6921421 - 6921381
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  6921421 cattttgttatctggcaaatgaaggaatttggagttgaaga 6921381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 6954590 - 6954550
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  6954590 cattttgttatttggcaaatgaaggaatttggagttgaaga 6954550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 18908928 - 18908836
Alignment:
Q  224 agtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    |||||||| | ||||||||| ||||||| ||||  ||| | | || | ||||||||||||||| |||||| ||||||| ||||| ||||||||    
T  18908928 agtgtgttgatggattgtctatgtttttctcaccgttttagagaaacccattttgttatatggaagatgatggaatttggagttcaagagtct 18908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 1826329 - 1826395
Alignment:
Q  226 tgtgttaaaggattgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatga 293  Q
    |||||| | ||| ||||||||||||| ||| ||||||||| || | ||||||||||||||||||||||    
T  1826329 tgtgttgatggactgtctttgtttttctcatgatttcaaataacc-cattttgttatatggcagatga 1826395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Complemental strand, 20699510 - 20699467
Alignment:
Q  273 attttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    |||||||||||||||||||||  |||||||||||||||| ||||    
T  20699510 attttgttatatggcagatgagagaatttcgagttgaagcgtct 20699467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 554428 - 554464
Alignment:
Q  225 gtgtgttaaaggattgtctttgtttttgtcacgattt 261  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  554428 gtgtgttaaagaattgtctttgtttttctcacgattt 554464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 18913628 - 18913584
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||| |||||| ||||||| ||||| ||||||||    
T  18913628 cattttgttatatggaagatgatggaatttggagttcaagagtct 18913584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 18920836 - 18920792
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||| |||||| ||||||| ||||| ||||||||    
T  18920836 cattttgttatatggaagatgatggaatttggagttcaagagtct 18920792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 20975557 - 20975597
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||||||||||||||| |||| ||||||| ||||||||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaaga 20975597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0649 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 5438 - 5481
Alignment:
Q  273 attttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||    
T  5438 attttgttatatggcagatgaaaaaatttagagttgaagagtct 5481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 27618457 - 27618534
Alignment:
Q  239 tgtctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||||| ||||| || ||| | ||||||||||||||| | ||| | ||| |  ||||||||||||||    
T  27618457 tgtctttgtttttgtcatgattttaagcaaactcattttgttatatggaaaatggaagaactcggagttgaagagtct 27618534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 29390288 - 29390325
Alignment:
Q  275 tttgttatatggcagatgaaggaatttcgagttgaaga 312  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaaga 29390325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 23086784 - 23086825
Alignment:
Q  275 tttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtct 23086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 29597653 - 29597585
Alignment:
Q  242 ctttgtttttgtcacgatttcaaacaatcacattttgttatatggcagatgaaggaatttcgagttgaa 310  Q
    |||||||||| |||| |||||||  || | ||||||||||||||||| ||||  |||||| ||||||||    
T  29597653 ctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaa 29597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 25901350 - 25901306
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||| | |||||||| ||||||||| ||||||||    
T  25901350 cattttgttatatggaaaatgaaggattttcgagttcaagagtct 25901306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 25915368 - 25915324
Alignment:
Q  272 cattttgttatatggcagatgaaggaatttcgagttgaagagtct 316  Q
    ||||||||||||||| | |||||||| ||||||||| ||||||||    
T  25915368 cattttgttatatggaaaatgaaggattttcgagttcaagagtct 25915324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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