View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14820_low_13 (Length: 279)

Name: NF14820_low_13
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14820_low_13
NF14820_low_13
[»] chr3 (8 HSPs)
chr3 (4-125)||(29438253-29438374)
chr3 (15-125)||(43615702-43615812)
chr3 (193-265)||(43616161-43616233)
chr3 (195-266)||(42914484-42914555)
chr3 (153-191)||(29438417-29438455)
chr3 (153-193)||(43615840-43615880)
chr3 (193-264)||(29313137-29313208)
chr3 (5-67)||(11985585-11985647)
[»] chr7 (9 HSPs)
chr7 (4-116)||(19362399-19362511)
chr7 (5-125)||(44598444-44598563)
chr7 (4-120)||(47967521-47967636)
chr7 (4-79)||(9698331-9698406)
chr7 (5-77)||(19113527-19113598)
chr7 (153-194)||(31642754-31642795)
chr7 (153-193)||(44598579-44598619)
chr7 (156-193)||(9698211-9698248)
chr7 (193-236)||(23705386-23705429)
[»] chr1 (8 HSPs)
chr1 (4-112)||(52453923-52454031)
chr1 (4-119)||(170872-170987)
chr1 (4-115)||(4808345-4808456)
chr1 (4-79)||(28702407-28702478)
chr1 (156-193)||(171039-171076)
chr1 (153-193)||(52453836-52453876)
chr1 (193-264)||(46906000-46906071)
chr1 (208-241)||(26673786-26673819)
[»] chr6 (3 HSPs)
chr6 (4-102)||(14533478-14533576)
chr6 (153-193)||(14533644-14533684)
chr6 (19-79)||(20613247-20613307)
[»] chr8 (3 HSPs)
chr8 (5-77)||(27084472-27084544)
chr8 (193-266)||(33285069-33285142)
chr8 (153-193)||(25430942-25430982)
[»] chr2 (6 HSPs)
chr2 (4-111)||(17623420-17623527)
chr2 (193-264)||(32532765-32532836)
chr2 (27-119)||(14735690-14735782)
chr2 (19-86)||(5887872-5887939)
chr2 (24-86)||(17303255-17303317)
chr2 (193-241)||(12287972-12288020)
[»] chr4 (6 HSPs)
chr4 (4-79)||(13564708-13564783)
chr4 (156-193)||(13564588-13564625)
chr4 (24-129)||(26494421-26494525)
chr4 (26-114)||(31523046-31523134)
chr4 (52-118)||(46852108-46852174)
chr4 (19-72)||(29096115-29096168)
[»] chr5 (7 HSPs)
chr5 (193-264)||(4870217-4870288)
chr5 (193-264)||(3631947-3632018)
chr5 (19-114)||(15974121-15974216)
chr5 (193-235)||(13106135-13106177)
chr5 (19-79)||(18768380-18768440)
chr5 (193-264)||(2977233-2977304)
chr5 (193-235)||(13036145-13036187)
[»] scaffold0060 (1 HSPs)
scaffold0060 (5-79)||(35661-35735)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 29438253 - 29438374
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||     
T  29438253 gggcggatctctttgggggcaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataatatcaatttgaattgagctggtgc 29438352  T
Q  104 agtggaaagggggtaccatgaa 125  Q
    ||||||||||||||||||||||    
T  29438353 agtggaaagggggtaccatgaa 29438374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 43615702 - 43615812
Alignment:
Q  15 tttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaaggg 114  Q
    |||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  43615702 tttgggggcaggcaggtgtcatgttatcccctaaagtttccttatatactatattaggagtataacatcaatctgaattgagttgctgcagtggaaaggg 43615801  T
Q  115 ggtaccatgaa 125  Q
    |||||||||||    
T  43615802 ggtaccatgaa 43615812  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 43616161 - 43616233
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43616161 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaagaattgagaggaccttgaattaat 43616233  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 42914555 - 42914484
Alignment:
Q  195 taaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaatt 266  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||  |||  ||||| ||||||||||||    
T  42914555 taaggagatcattgatatttctaatgatagttgcataaacatgtcaagcattaggaggagcttgaattaatt 42914484  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 29438417 - 29438455
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaa 191  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  29438417 acttgtttaatcttctattattgcatattgtatttaaaa 29438455  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 43615840 - 43615880
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  43615840 acttgtttaatcttctattattcaatatcgtatttaaaaaa 43615880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 29313208 - 29313137
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| || |||||||| |||||||| ||||||||||| |||  ||| || ||| ||||||||||    
T  29313208 attaaggagatccttaatatttctgatgatagtggcataaacatgtcaagcattaaggggagcttgaattaa 29313137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 11985647 - 11985585
Alignment:
Q  5 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactata 67  Q
    ||||||||||||||| ||| |||||| |||| ||||||||||||  ||  |||||||||||||    
T  11985647 ggcggatctctttggtggtcggcaggagccacggtatcccccaagattaacttatatactata 11985585  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 19362399 - 19362511
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||     
T  19362399 gggcggatctctttgggggcaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataatatcaatctgaattgagctgctgc 19362498  T
Q  104 agtggaaaggggg 116  Q
    |||||||||||||    
T  19362499 agtggaaaggggg 19362511  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 44598444 - 44598563
Alignment:
Q  5 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgta 104  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |    
T  44598444 ggcgtatctctttgggg-taggcaggtgtcatggtatcccccaaagtttccttatatactatattaggagtataatattaatttgaattgagctgctgca 44598542  T
Q  105 gtggaaagggggtaccatgaa 125  Q
    |||||||||||||||| ||||    
T  44598543 gtggaaagggggtaccgtgaa 44598563  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 47967636 - 47967521
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    |||||||||| |||||||| || || ||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||| | ||||||| ||||      
T  47967636 gggcggatctatttgggggcag-caagtgccatggtatccctcaaaatttccttatatattatattaggagtataacataaatctaaattgagctgctcc 47967538  T
Q  104 agtggaaagggggtacc 120  Q
    |||||||||||||||||    
T  47967537 agtggaaagggggtacc 47967521  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 9698406 - 9698331
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 79  Q
    |||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  9698406 gggcggatctctttgggggacggtaggtgccatggtatcctccaaagtttccttatatactatattaagagtataa 9698331  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 19113598 - 19113527
Alignment:
Q  5 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtat 77  Q
    ||||||||||||||||||||||| |||| ||||| || ||||||| |||||||||||||| ||||||| ||||    
T  19113598 ggcggatctctttgggggtaggctggtgtcatggcat-ccccaaattttccttatatactgtattaggtgtat 19113527  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 31642754 - 31642795
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaat 194  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  31642754 acttgtttaatcttctattattgcatattgtatttaaaaaat 31642795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 44598579 - 44598619
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  44598579 acttgtttaatcttctattattgcatattgtatttaaaaaa 44598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 9698248 - 9698211
Alignment:
Q  156 tgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9698248 tgtttaatcttctattattgcatattgtatttaaaaaa 9698211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 23705386 - 23705429
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacat 236  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||    
T  23705386 attaaagagatcattgatatttctattgatagttgcataaacat 23705429  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 52454031 - 52453923
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||     
T  52454031 gggcggatctctttgggggcaggcaagtgtcatggtatcccccaaagtttccttatatactatattaggagtataatatcaatttgaattgagctgctgc 52453932  T
Q  104 agtggaaag 112  Q
    |||||||||    
T  52453931 agtggaaag 52453923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 170872 - 170987
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| ||     
T  170872 gggcgaatctctttgggggaaggcaggtgccatgatatcccccaaagtttccttatatagtatattaggagtataataacaactagaattgagttgttgc 170971  T
Q  104 agtggaaagggggtac 119  Q
    |||||| |||||||||    
T  170972 agtggagagggggtac 170987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 4808345 - 4808456
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    ||||| ||||||||| ||| ||||||||| | |||||||| ||||||||||||||||||| ||||||| ||||||  | ||| | ||||||| |||||||    
T  4808345 gggcgaatctctttgagggcaggcaggtgtcgtggtatcctccaaagtttccttatataccatattagaagtatattaacaactagaattgatttgctgt 4808444  T
Q  104 agtggaaagggg 115  Q
    ||||||||||||    
T  4808445 agtggaaagggg 4808456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 28702478 - 28702407
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 79  Q
    |||||||||||||||||||    |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28702478 gggcggatctctttggggg----caggtgacatggtatccctcaaagtttccttatatactatattaagagtataa 28702407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 171039 - 171076
Alignment:
Q  156 tgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  171039 tgtttaatcttctattattgcatattgtatttaaaaaa 171076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 52453876 - 52453836
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  52453876 acttgtttaatcttctattatagcatattgtatttaaaaaa 52453836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 46906071 - 46906000
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| || | |||||| ||| |||| ||||||||||||||| ||||||| ||  ||||||||||    
T  46906071 attaaggagatccttaacatttctgatggtagtggcataaacatgccaagaattgaggggggcttgaattaa 46906000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 26673819 - 26673786
Alignment:
Q  208 gatatttctaatgatagttgcataaacatgccaa 241  Q
    ||||||||||||| ||||||||||||||||||||    
T  26673819 gatatttctaatgttagttgcataaacatgccaa 26673786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 14533478 - 14533576
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctg 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||    
T  14533478 gggcggatctctttgggggcaggcaggtgccatggtatcccccaaagtttcctgatatactatattaggagtataacatcaatataaattgagctgctg 14533576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 14533644 - 14533684
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  14533644 acttgtttaatcttctattgttgcatattgtatttaaaaaa 14533684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 20613307 - 20613247
Alignment:
Q  19 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 79  Q
    |||| ||| ||||||||||| |||||||| | || ||||||||||||||||||| ||||||    
T  20613307 ggggcaggtaggtgccatggcatcccccagatttcccttatatactatattaggtgtataa 20613247  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 27084544 - 27084472
Alignment:
Q  5 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtat 77  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27084544 ggcggatctctttgggggaaggcaggtgccatggcatcccccaaagtttccttatatactatattaggtgtat 27084472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 33285142 - 33285069
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaatt 266  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||  |||| ||||| ||| ||||||||    
T  33285142 attaagcagatcgttgatatttctaatgatagttgcataaacatgtcaagcattgggaggagcttaaattaatt 33285069  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 25430942 - 25430982
Alignment:
Q  153 acttgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  25430942 acttgtttaatcttctattattgcatattgtattaaaaaaa 25430982  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 17623527 - 17623420
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgt 103  Q
    ||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||   |||||||| |||||     
T  17623527 gggcggatctctttgggggcagacatgtgtcatggtatcccccaaagtttccttatatactatattagaagtataataacaaccagaattgagctgctgc 17623428  T
Q  104 agtggaaa 111  Q
    ||||||||    
T  17623427 agtggaaa 17623420  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 32532765 - 32532836
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  32532765 attaaggagatcattgatatttctaatgatagttgcataaacatgccaagagttgagaggagcttgaattaa 32532836  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 14735782 - 14735690
Alignment:
Q  27 caggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtac 119  Q
    |||| ||||||| || ||||| | ||| |||||||||||||||||| |||| | ||||||| |||||  |||| ||| ||||||| |||||||    
T  14735782 caggggccatggcattccccagatttttcttatatactatattaggtgtattatatcaattagaatttggttgttgttgtggaaatggggtac 14735690  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 5887872 - 5887939
Alignment:
Q  19 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaat 86  Q
    |||| ||| ||||||||||| |||||||| | || |||||||||||| |||||| |||||| ||||||    
T  5887872 ggggcaggtaggtgccatggcatcccccagatttcccttatatactacattaggtgtataatatcaat 5887939  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 17303317 - 17303255
Alignment:
Q  24 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaat 86  Q
    |||||||||  |||| |||||||| | || ||||||||||||||||||| |||||| ||||||    
T  17303317 aggcaggtgttatggcatcccccagatttcccttatatactatattaggtgtataatatcaat 17303255  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 12287972 - 12288020
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaa 241  Q
    |||||||||||| |  | ||||||||||||||| |||||||||||||||    
T  12287972 attaaggagatcttcaacatttctaatgatagtggcataaacatgccaa 12288020  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 13564783 - 13564708
Alignment:
Q  4 gggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 79  Q
    |||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  13564783 gggcggatctctttgggggacggtaggtgccatggtatcctccaaagtttccttatatactatattaagagtataa 13564708  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 13564625 - 13564588
Alignment:
Q  156 tgtttaatcttctattattgcatatcgtatttaaaaaa 193  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13564625 tgtttaatcttctattattgcatattgtatttaaaaaa 13564588  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 26494421 - 26494525
Alignment:
Q  24 aggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggtaccatg 123  Q
    ||||||||||||||  |||||||| | || ||||||||||||||||||| ||||||  |||||   |||| ||||| || ||||| || ||||| |||||    
T  26494421 aggcaggtgccatgacatcccccagatttcccttatatactatattaggtgtataatttcaataataatttagttgttgcagtggtaa-ggggtgccatg 26494519  T
Q  124 aactgg 129  Q
    ||||||    
T  26494520 aactgg 26494525  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 31523046 - 31523134
Alignment:
Q  26 gcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaaggg 114  Q
    ||||||| ||||| ||||||||||||||||||||||| | ||||||| |||| ||| ||| | ||||| || | ||| ||||| |||||    
T  31523046 gcaggtgtcatggcatcccccaaagtttccttatatattgtattaggtgtattacaacaactagaattcagctactgcagtggtaaggg 31523134  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 46852174 - 46852108
Alignment:
Q  52 ttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaagggggta 118  Q
    ||||||||||| ||||||||| |||| | | ||||| ||||| |||||||| |||||||||| ||||    
T  46852174 ttccttatatattatattaggtgtattataacaattagaattcagttgctgcagtggaaaggcggta 46852108  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 29096115 - 29096168
Alignment:
Q  19 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattagg 72  Q
    |||| ||||||||||||||| |||||||| | || |||||| ||||||||||||    
T  29096115 ggggcaggcaggtgccatggcatcccccagatttcccttatttactatattagg 29096168  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 4870217 - 4870288
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  4870217 attaaggagattgttgatatttctaatgatagttgcataaacatgtcaagcattgagaggagcttgaattaa 4870288  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 3631947 - 3632018
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  3631947 attaaggagatcgttgatgtttctaatgatagttgcataaacatgtcaaacattgagaggggcttgaattaa 3632018  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 15974216 - 15974121
Alignment:
Q  19 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataacatcaatttgaattgagttgctgtagtggaaaggg 114  Q
    |||| ||||||||||||||| |||||| | | |||||||||||||||||||||| |||| |  |||||   |||| ||||| |||||||| |||||    
T  15974216 ggggcaggcaggtgccatggcatcccctagattttccttatatactatattaggtgtatgatttcaataacaatttagttgttgtagtggtaaggg 15974121  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 13106135 - 13106177
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaaca 235  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  13106135 attaaggagatcgttaatatttctaatgataattgcataaaca 13106177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 18768440 - 18768380
Alignment:
Q  19 ggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 79  Q
    |||| ||||||||||||||| ||||||||   || ||||||||||||||||||| ||||||    
T  18768440 ggggcaggcaggtgccatggcatcccccaggtttcccttatatactatattaggtgtataa 18768380  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 2977304 - 2977233
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 264  Q
    |||||||||||| |||| |||| | | |||||| ||||||| |||||||  |||||||||| ||||||||||    
T  2977304 attaaggagatccttgacattttttacgatagtggcataaaaatgccaagcattgagaggaacttgaattaa 2977233  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 13036145 - 13036187
Alignment:
Q  193 attaaggagatcgttgatatttctaatgatagttgcataaaca 235  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  13036145 attaaggagatcgttaatatttttaatgatagttgtataaaca 13036187  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 35661 - 35735
Alignment:
Q  5 ggcggatctctttgggggtaggcaggtgccatggtatcccccaaagtttccttatatactatattaggagtataa 79  Q
    ||||||||| ||  |||| || || ||||||||| |||||||| | || ||||||||||||||||||| ||||||    
T  35661 ggcggatcttttaaggggcagccaagtgccatggcatcccccagatttcccttatatactatattaggtgtataa 35735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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