View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_low_14 (Length: 278)
Name: NF14820_low_14
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 15180955 - 15180707
Alignment:
| Q |
17 |
atgaatactgaaaatgactaatcctattaggaaacaccaaaacatttgaaaaatcacccacccattttgcgccattaccatccacacttaacttcccaac |
116 |
Q |
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| T |
15180955 |
atgaatactgaaaatgactaatcctattaggaaacaccaaaacatttgaaaaatcacccacccattttgtgccattaccatccacacttaacttcccaac |
15180856 |
T |
|
| Q |
117 |
cgttgatcttaaaatcataccaatcacattgttcctatcaatcaccacttgatcaatgttactaaatcccccatctaattttacaattggaacattatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15180855 |
cgttgatcttaaaatcataccaatcacattgttcctatcaatcaccacttgatcaatgttactaaatcccccatctaattttacaattggaacattatta |
15180756 |
T |
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| Q |
217 |
ttagggtttccactaaacatattgttaacaatatttaaaccataaactt |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15180755 |
ttagggtttccactaaacatattgttaacaatatttaaaccataaactt |
15180707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 38858938 - 38859142
Alignment:
| Q |
17 |
atgaatactgaaaatgactaatcctattaggaaacaccaaaacatttgaaaaatcacccacccattttgcgccattaccatccacacttaacttcccaac |
116 |
Q |
| |
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||||||| |||| ||||||||||| ||||||||| |||||||| |||||||||| || |||| |||| |||||||||| |||| ||||||| ||||| |
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| T |
38858938 |
atgaatattgaacatgactaatccgattaggaaataccaaaactgatgaaaaatcagcctcccactttgtgccattaccactcacagttaacttaccaac |
38859037 |
T |
|
| Q |
117 |
cgttgatcttaaaatcataccaatcacattgttcctatcaatcaccacttgatcaatgttactaaatcccccatctaattttacaattggaacattatta |
216 |
Q |
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||||||||| || ||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||| || ||| |
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| T |
38859038 |
cgttgatctcaagcccataccattcacattgtttctatcaatcaccacttgatcaacattactaaattgcccttctagacttacaattggaaccttctta |
38859137 |
T |
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| Q |
217 |
ttagg |
221 |
Q |
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||||| |
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| T |
38859138 |
ttagg |
38859142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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