View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_low_16 (Length: 253)
Name: NF14820_low_16
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 23900153 - 23900376
Alignment:
| Q |
8 |
ccaagaatatcagttttaccagaaaaatttaaatgggtttaaatacccacttgatattttgaatctactaaaatatattacttctattaaaacaaatgaa |
107 |
Q |
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| T |
23900153 |
ccaaaaatatcagttttaccaaaaaaaattaaatgggtttaaatacccacttgatattttgaatctactaaaatatattacttctattaaaacaaatgaa |
23900252 |
T |
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| Q |
108 |
ccaaccctt-nnnnnnnnnnnnnngaaatgagcaaacctcccctattatttttcttcattgtttcaggtctaatattctttcttttcctcctctaatgta |
206 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
23900253 |
ccaacccttaaaaaaaaacaaaaagaaatgagcaaacctcccc---tatttttcttc----tttcaggcctaatattctttcttttcctcctctaatgta |
23900345 |
T |
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| Q |
207 |
gatgattaatgaagcaaaatgaagtgcaact |
237 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23900346 |
gatgattaatgaagcaaaatgaagtgcaact |
23900376 |
T |
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