View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_low_17 (Length: 251)
Name: NF14820_low_17
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_low_17 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 26121008 - 26121240
Alignment:
| Q |
14 |
aatatcatctcaaaaatagatatcccacaattctgaaagtctgaaacttaatatatgactatcaaattttgaaattttgagtcaactaaaatcattaaga |
113 |
Q |
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| T |
26121008 |
aatatcatctcaaaaatagatatcccacaattctgaaagtctgaaacttaatatatgaccatcaaattctgaaattttgagtcaactaaaatcagtaaga |
26121107 |
T |
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| Q |
114 |
tcaaacacagtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaattaaatttcgagtcaacataaatcatgcatgaccttaaaattt |
213 |
Q |
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| T |
26121108 |
tcaaacacagtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagata-----taaatttcgagtcaacataaatcatgcaagaccttaaaattt |
26121202 |
T |
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| Q |
214 |
aagagaagacccaaactttaaaaatgaaagatataatc |
251 |
Q |
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| T |
26121203 |
aagagaagacccaaatttaaaaaatgaaagatataatc |
26121240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 26128426 - 26128522
Alignment:
| Q |
40 |
acaattctgaaagtctgaaacttaatatatgactatcaaattttgaaattttgagtcaactaaaatcattaagatcaaacacagtatcacaatgacc |
136 |
Q |
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| T |
26128426 |
acaaatctgaaagtctgaagcttattatatgactatcaaattctgaaattttgagtcaactaaaatcagtaagatcaaacacaattccacaatgacc |
26128522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 26128547 - 26128635
Alignment:
| Q |
122 |
agtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaattaaatttcgagtcaacataaatcatgcatgaccttaaaatttaa |
215 |
Q |
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| T |
26128547 |
agtatcacaaagaccacaaaacaaaaacagtaaagtcaaaagatataaatt-----tggagtcaacaaaaatcatgcaagaccttaaaatttaa |
26128635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 26037964 - 26038046
Alignment:
| Q |
34 |
tatcccacaattctgaaagtctgaaacttaatat--atgactatcaaattttgaaattttgagtcaactaaaatcattaagat |
114 |
Q |
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| T |
26037964 |
tatcccacaattctaaaattcagaaacttaatatatatgactatcaaattctaaaattttcagtcaacgaaaatcattaagat |
26038046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 26038150 - 26038214
Alignment:
| Q |
180 |
gagtcaacataaatcatgcatgaccttaaaatttaagagaagacccaaactttaaaaatgaaaga |
244 |
Q |
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| T |
26038150 |
gagtcaacgaaaatcatgcaagagcttaaaattcaagacaagacccaaaattcaaaaatgaaaga |
26038214 |
T |
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