View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_low_19 (Length: 241)
Name: NF14820_low_19
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 3552515 - 3552610
Alignment:
| Q |
113 |
atactcaaacccattacaaagaggtaacatgacatgatagggtcaaactccacccaagagtccaaaatccaaatcaagaataacacaacagaacaa |
208 |
Q |
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| T |
3552515 |
atactcaaacccattacaaagagataacatgacatgatagggtcaaactccacccaagagtccaaaatccaaaccaagaataacacaacaaaacaa |
3552610 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 3552408 - 3552475
Alignment:
| Q |
5 |
tttaaatgaatcaaaattacctgaaggagattataattcatgaagttgcacatgaagaatacaatttt |
72 |
Q |
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| T |
3552408 |
tttaaatgaattcaaattaccttaaggagattataattcatacaattgcacgtgaagaatacaatttt |
3552475 |
T |
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