View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14820_low_2 (Length: 640)

Name: NF14820_low_2
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14820_low_2
NF14820_low_2
[»] chr4 (2 HSPs)
chr4 (20-634)||(22015937-22016550)
chr4 (470-506)||(30871763-30871799)
[»] chr2 (4 HSPs)
chr2 (273-376)||(40059108-40059211)
chr2 (273-376)||(40077136-40077239)
chr2 (273-376)||(40085046-40085149)
chr2 (157-206)||(5453660-5453709)
[»] chr8 (2 HSPs)
chr8 (160-207)||(16657507-16657554)
chr8 (472-504)||(34489298-34489330)
[»] chr1 (2 HSPs)
chr1 (468-503)||(47126339-47126374)
chr1 (469-505)||(5243300-5243336)
[»] chr6 (2 HSPs)
chr6 (469-506)||(2002150-2002187)
chr6 (472-504)||(4323827-4323859)
[»] chr5 (1 HSPs)
chr5 (467-504)||(35053681-35053718)
[»] chr3 (3 HSPs)
chr3 (468-501)||(25204150-25204183)
chr3 (273-346)||(44352747-44352820)
chr3 (469-505)||(26643224-26643260)


Alignment Details
Target: chr4 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 20 - 634
Target Start/End: Complemental strand, 22016550 - 22015937
Alignment:
Q  20 gtagcactaacacttcagattgaaaatgtgtcttgtgtttaacatttgtcggtgttatataccattatgacactgatatatgggattacatttaatgaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016550 gtagcactaacacttcagattgaaaatgtgtcttgtgtttaacatttgtcggtgttatataccattatgacactgatatatgggattacatttaatgaca 22016451  T
Q  120 tttatttattttttcttctaactattattacaatgtttacgtgtcagtgttgtgtttgatgtatgtgtttgtgtcggtgcttcatagatatacagtactt 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22016450 tttattt-ttttttcttctaactattattacaatgtttacgtgtcagtgttgtgtttgatgtatgtgtttgtgtctgtgcttcatagatatacagtactt 22016352  T
Q  220 tttcaatttgtgtttgatgtttgaacttataacaatggtatattttgttattgtagatgtggcctgaccttattcagaaatcaaaagatgggggaattga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016351 tttcaatttgtgtttgatgtttgaacttataacaatggtatattttgttattgtagatgtggcctgaccttattcagaaatcaaaagatgggggaattga 22016252  T
Q  320 tgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccaggttctgttcttttccatcttcatattgttcttctgttttcccttttct 419  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016251 tgtgattgagacttatgttttctggaacctgcacgagccggttcgaggccaggttctgttcttttccatcttcatattgttcttctgttttcccttttct 22016152  T
Q  420 atttcttacattgcattgtgtgagtgttcaaacataaaagcttagaagactatgtagcaccgacactttagattgaaggtgtgtccatgtctgcatccgt 519  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016151 atttcttacattgcattgtgtgagtgttcaaacataaaagcttaaaagactatgtagcaccgacactttagattgaaggtgtgtccatgtctgcatccgt 22016052  T
Q  520 gcttcatagatagaagatcatttagatatttatcagatagtgtattttcagaactttttctattgaaagacattaaataaatgattgattacatattttg 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016051 gcttcatagatagaagatcatttagatatttatcagatagtgtattttcagaactttttctattgaaagacattaaataaatgattgattacatattttg 22015952  T
Q  620 gcttgtcagtataat 634  Q
    |||||||||||||||    
T  22015951 gcttgtcagtataat 22015937  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 30871763 - 30871799
Alignment:
Q  470 tatgtagcaccgacactttagattgaaggtgtgtcca 506  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  30871763 tatgtagcaccaacactttagattgatggtgtgtcca 30871799  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 40059108 - 40059211
Alignment:
Q  273 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccagg 372  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || ||||| |||  ||||||||    
T  40059108 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40059207  T
Q  373 ttct 376  Q
    ||||    
T  40059208 ttct 40059211  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 40077136 - 40077239
Alignment:
Q  273 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccagg 372  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || ||||| |||  ||||||||    
T  40077136 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40077235  T
Q  373 ttct 376  Q
    ||||    
T  40077236 ttct 40077239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 376
Target Start/End: Original strand, 40085046 - 40085149
Alignment:
Q  273 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgaaccggttcgaggccagg 372  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || ||||| |||  ||||||||    
T  40085046 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 40085145  T
Q  373 ttct 376  Q
    ||||    
T  40085146 ttct 40085149  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 5453709 - 5453660
Alignment:
Q  157 tacgtgtcagtgttgtgtttgatgtatgtgtttgtgtcggtgcttcatag 206  Q
    ||||||| ||||||||||||| ||| ||||| |||||| |||||||||||    
T  5453709 tacgtgttagtgttgtgtttggtgtttgtgtatgtgtcagtgcttcatag 5453660  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 16657507 - 16657554
Alignment:
Q  160 gtgtcagtgttgtgtttgatgtatgtgtttgtgtcggtgcttcataga 207  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  16657507 gtgtcattgtcgtgtttgatgtctgtgtttgtgtcggtgcttcataga 16657554  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 504
Target Start/End: Complemental strand, 34489330 - 34489298
Alignment:
Q  472 tgtagcaccgacactttagattgaaggtgtgtc 504  Q
    |||||||||||||||||||||||||||||||||    
T  34489330 tgtagcaccgacactttagattgaaggtgtgtc 34489298  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 503
Target Start/End: Complemental strand, 47126374 - 47126339
Alignment:
Q  468 actatgtagcaccgacactttagattgaaggtgtgt 503  Q
    |||||||| |||||||||||||||||||||||||||    
T  47126374 actatgtatcaccgacactttagattgaaggtgtgt 47126339  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 505
Target Start/End: Complemental strand, 5243336 - 5243300
Alignment:
Q  469 ctatgtagcaccgacactttagattgaaggtgtgtcc 505  Q
    |||||||||||||||||||  ||||||||||||||||    
T  5243336 ctatgtagcaccgacacttctgattgaaggtgtgtcc 5243300  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 2002150 - 2002187
Alignment:
Q  469 ctatgtagcaccgacactttagattgaaggtgtgtcca 506  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  2002150 ctatgtagcaccgacacattagattgaaggtttgtcca 2002187  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 504
Target Start/End: Original strand, 4323827 - 4323859
Alignment:
Q  472 tgtagcaccgacactttagattgaaggtgtgtc 504  Q
    |||||||| ||||||||||||||||||||||||    
T  4323827 tgtagcactgacactttagattgaaggtgtgtc 4323859  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 35053681 - 35053718
Alignment:
Q  467 gactatgtagcaccgacactttagattgaaggtgtgtc 504  Q
    |||||||||||||||||||||  |||||||||||||||    
T  35053681 gactatgtagcaccgacacttctgattgaaggtgtgtc 35053718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 501
Target Start/End: Original strand, 25204150 - 25204183
Alignment:
Q  468 actatgtagcaccgacactttagattgaaggtgt 501  Q
    ||||||||||||||||||||||||||||| ||||    
T  25204150 actatgtagcaccgacactttagattgaatgtgt 25204183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 44352820 - 44352747
Alignment:
Q  273 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaa 346  Q
    |||||||||||||  |||||||| | | ||||||| || ||||| ||||| ||||| || ||||||||||||||    
T  44352820 tagatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa 44352747  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 26643224 - 26643260
Alignment:
Q  469 ctatgtagcaccgacactttagattgaaggtgtgtcc 505  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  26643224 ctatgtagcaccgacacttcagattgaaggtttgtcc 26643260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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