View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14820_low_3 (Length: 436)
Name: NF14820_low_3
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14820_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29017734 - 29017417
Alignment:
| Q |
1 |
taaaaataggtggtagtgtcacagattgtgatccttgaaatcnnnnnnnatccaatacagttctatcaccggtctcaaacaatagctccaaatctggtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29017734 |
taaaaataggtggtagtgtcacagattgtgatccttgaaatctttttttatccaatacagttctatcaccagtctcaaacaatagctccaaatctggtac |
29017635 |
T |
|
| Q |
101 |
tctcccagggtacaaccttaaaagttgtactattccccatacagtgaacaaatcccttgtttgaaatgaatcttcatatgtttctacataagcttttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29017634 |
tctcccagggtacaaccttaaaagttgtactattccccatacagtgaacaaatcccttgtttgaaatgaatctgcatatgtttctacataagcttttcct |
29017535 |
T |
|
| Q |
201 |
tttttaatcacaattctaagttgtgaaatattttttccactttccaccgtttcccttgtgattcctgtactcttccatggttccaaatcttcatgaatcc |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29017534 |
tttttaatcacaattctaagctgtgaaatattttttccactttccaccgtttcccttgtgattcctgtactcttccatggttccaaatcttcatgaatcc |
29017435 |
T |
|
| Q |
301 |
atctaaagtgctctggac |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
29017434 |
atctaaagtgctctggac |
29017417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 57 - 318
Target Start/End: Complemental strand, 29037542 - 29037281
Alignment:
| Q |
57 |
acagttctatcaccggtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtactattccccatacagtgaacaaatccc |
156 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
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| T |
29037542 |
acagctctatcaccagtctcaaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtactattccccatacagtaaatgtagccc |
29037443 |
T |
|
| Q |
157 |
ttgtttgaaatgaatcttcatatgtttctacataagcttttccttttttaatcacaattctaagttgtgaaatattttttccactttccaccgtttccct |
256 |
Q |
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||||||||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||||| |||||||| |||| |||||| |||||| ||||||| |
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| T |
29037442 |
ttgtttgaaatgaatctccataagtttctacataaacttttccttgtttaatcacaattctaagctgtgaaatgttttctccactatccaccatttccct |
29037343 |
T |
|
| Q |
257 |
tgtgattcctgtactcttccatggttccaaatcttcatgaatccatctaaagtgctctggac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
29037342 |
tgtgattcctgtactcttccatggttccaaatcttcatgaatccatctgaagtgttctggac |
29037281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 302
Target Start/End: Original strand, 11716144 - 11716369
Alignment:
| Q |
77 |
aaacaatagctccaaatctggtactctcccagggtacaaccttaaaagttgtactattccccatacagtgaacaaatcccttgtttgaaatgaatcttca |
176 |
Q |
| |
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||||| |||||||||||| |||| | | |||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||| | || | | || |
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| T |
11716144 |
aaacattagctccaaatcaggtatttttccagggtataaccttaaaagttgtaaaattccccatattgtgaacacatcccttgtttgataagattttgca |
11716243 |
T |
|
| Q |
177 |
tatgtttctacataagcttttccttttttaatcacaattctaagttgtgaaatattttttccactttccaccgtttcccttgtgattcctgtactcttcc |
276 |
Q |
| |
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|| | |||| || |||||||| || || ||||| |||| ||||| || |||||||||||||| ||| |||| |||||||||||||| ||| || |
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| T |
11716244 |
aatttatctatgtatgcttttccattcacaaccacaagcctaaaatgtgacatgttttttccactttcaaccatttctcttgtgattcctgttttctccc |
11716343 |
T |
|
| Q |
277 |
atggttccaaatcttcatgaatccat |
302 |
Q |
| |
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|||| | | ||||||||| |||||| |
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|
| T |
11716344 |
atggcttaagatcttcatggatccat |
11716369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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