View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14820_low_4 (Length: 431)

Name: NF14820_low_4
Description: NF14820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14820_low_4
NF14820_low_4
[»] chr6 (14 HSPs)
chr6 (232-426)||(4040716-4040910)
chr6 (123-187)||(4040608-4040672)
chr6 (36-122)||(4040490-4040576)
chr6 (39-103)||(8931570-8931634)
chr6 (39-119)||(16766724-16766804)
chr6 (46-97)||(16488564-16488615)
chr6 (46-97)||(18367870-18367921)
chr6 (39-99)||(9195726-9195786)
chr6 (40-103)||(11424679-11424742)
chr6 (36-98)||(10294131-10294193)
chr6 (39-81)||(34073337-34073379)
chr6 (42-119)||(9107322-9107399)
chr6 (39-88)||(9617461-9617510)
chr6 (39-103)||(8365487-8365551)
[»] chr4 (8 HSPs)
chr4 (39-125)||(30982824-30982910)
chr4 (39-104)||(22234857-22234922)
chr4 (71-119)||(9996888-9996936)
chr4 (74-110)||(35157957-35157993)
chr4 (83-119)||(35161096-35161132)
chr4 (39-71)||(40179636-40179668)
chr4 (41-81)||(44132634-44132674)
chr4 (74-106)||(49431077-49431109)
[»] chr2 (7 HSPs)
chr2 (40-120)||(35056896-35056976)
chr2 (36-118)||(44860344-44860426)
chr2 (40-120)||(24975277-24975356)
chr2 (39-125)||(27286238-27286324)
chr2 (39-97)||(34784956-34785014)
chr2 (37-110)||(4207882-4207954)
chr2 (74-119)||(18840976-18841021)
[»] chr1 (11 HSPs)
chr1 (39-106)||(9828071-9828138)
chr1 (39-100)||(34371740-34371801)
chr1 (39-92)||(44482257-44482310)
chr1 (39-110)||(25361913-25361982)
chr1 (39-120)||(31694661-31694742)
chr1 (74-106)||(5898242-5898274)
chr1 (39-90)||(21038110-21038161)
chr1 (46-97)||(25934650-25934701)
chr1 (40-106)||(9629865-9629931)
chr1 (39-97)||(47989524-47989582)
chr1 (63-119)||(40917800-40917856)
[»] chr7 (10 HSPs)
chr7 (42-98)||(26329355-26329411)
chr7 (39-119)||(24339669-24339749)
chr7 (39-120)||(21560530-21560611)
chr7 (42-122)||(25822685-25822765)
chr7 (39-119)||(26033413-26033493)
chr7 (39-110)||(11665401-11665472)
chr7 (40-125)||(11072326-11072409)
chr7 (39-105)||(32308147-32308213)
chr7 (74-119)||(598259-598304)
chr7 (38-70)||(22484051-22484083)
[»] chr5 (9 HSPs)
chr5 (36-100)||(11685963-11686026)
chr5 (39-106)||(21542057-21542124)
chr5 (46-97)||(21814295-21814346)
chr5 (39-125)||(21522777-21522863)
chr5 (39-125)||(21533343-21533429)
chr5 (42-102)||(3966533-3966593)
chr5 (46-97)||(6401532-6401583)
chr5 (40-88)||(6035510-6035558)
chr5 (39-119)||(7677732-7677812)
[»] chr8 (10 HSPs)
chr8 (39-106)||(29447471-29447538)
chr8 (42-119)||(29510256-29510333)
chr8 (39-102)||(11927055-11927118)
chr8 (39-106)||(22652003-22652070)
chr8 (39-97)||(26902149-26902207)
chr8 (39-125)||(12570455-12570540)
chr8 (39-88)||(28384977-28385026)
chr8 (37-125)||(12570681-12570768)
chr8 (39-119)||(15816081-15816161)
chr8 (39-98)||(24362174-24362234)
[»] scaffold0008 (1 HSPs)
scaffold0008 (39-96)||(263347-263404)
[»] chr3 (8 HSPs)
chr3 (40-125)||(15796240-15796325)
chr3 (40-106)||(8039800-8039866)
chr3 (39-92)||(16192729-16192782)
chr3 (46-92)||(13806270-13806316)
chr3 (39-96)||(14209140-14209197)
chr3 (77-118)||(16192686-16192727)
chr3 (39-119)||(4987243-4987323)
chr3 (39-87)||(28678330-28678378)
[»] scaffold0036 (1 HSPs)
scaffold0036 (41-97)||(9721-9777)
[»] scaffold0044 (1 HSPs)
scaffold0044 (39-106)||(53207-53274)
[»] scaffold0376 (1 HSPs)
scaffold0376 (38-110)||(6338-6410)
[»] scaffold0123 (1 HSPs)
scaffold0123 (39-103)||(44493-44557)
[»] scaffold0003 (1 HSPs)
scaffold0003 (39-119)||(241621-241701)
[»] scaffold0623 (1 HSPs)
scaffold0623 (46-97)||(5970-6021)
[»] scaffold0168 (3 HSPs)
scaffold0168 (39-88)||(21070-21119)
scaffold0168 (48-88)||(21208-21248)
scaffold0168 (48-88)||(21337-21377)
[»] scaffold0086 (1 HSPs)
scaffold0086 (66-119)||(2982-3035)
[»] scaffold0279 (1 HSPs)
scaffold0279 (51-103)||(17848-17900)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 4040716 - 4040910
Alignment:
Q  232 atcaaattctaatgaattaaatatcatttgaggaagcttcctcatgcatcaaggtaggctctatcacaatcatttttgcataagaacaatcaattaaaag 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4040716 atcaaattctaatgaattaaatatcatttgaggaagcttcctcatgcatcaaggtaggctctatcacaatcatttttgcataagaacaatcaattaaaag 4040815  T
Q  332 cttaagatacaacaaaacactacattaatttagtgtttccattaacttttggttggttgtttgtttctgtgggcacttagttcatacaagaatta 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4040816 cttaagatacaacaaaacactacattaatttagtgtttccattaacttttggttggttgtttgtttctgtgggcacttagttcatacaagaatta 4040910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 4040608 - 4040672
Alignment:
Q  123 agaagtataagagggtcagttcatgtaaagaatgaaactatgaggcagggcttcaaatggttagc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4040608 agaagtataagagggtcagttcatgtaaagaatgaaactatgaggcagggcttcaaatggttagc 4040672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 4040490 - 4040576
Alignment:
Q  36 tcgcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaa 122  Q
    |||||| |||||||||||||||||  ||||| ||||||||| | ||||||||||||||| |||||||||| |||| || ||||||||    
T  4040490 tcgcattattcagtataattatatatgtcggcgtcgtctcgatatcagacacgacacgtatccaacaccgaaacacacttaatctaa 4040576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 8931634 - 8931570
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacac 103  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||  |||||| | ||||||||    
T  8931634 cataattcagtataattatatgtgtcgatgtcgtgtcggtgtcagatgcgacacatatccaacac 8931570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 16766724 - 16766804
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||| |||||| | | ||||||||||| |||||||| ||||| |||||||||| ||||||| |||  |||||||    
T  16766724 cataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatc 16766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 16488615 - 16488564
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    |||| |||||||||| ||||||||||| |||||||| |||||||||||||||    
T  16488615 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 16488564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 18367870 - 18367921
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  18367870 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtc 18367921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 9195786 - 9195726
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtcca 99  Q
    ||||||| ||| |||||||||| ||||||||||| | |||||| ||||||||| |||||||    
T  9195786 cataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgacatgtgtcca 9195726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 11424742 - 11424679
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacac 103  Q
    |||||||| |||||||||||| || ||||| || ||||||||  |||||||| |||||||||||    
T  11424742 ataattcaatataattatatgtgttggtgttgtgtcggtgtcgaacacgacatgtgtccaacac 11424679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 10294131 - 10294193
Alignment:
Q  36 tcgcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtcc 98  Q
    ||||||| |||| | |||||||||| ||||||||||| | |||||| ||||||||| ||||||    
T  10294131 tcgcatatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtcc 10294193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 34073379 - 34073337
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtc 81  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||    
T  34073379 cataattcagtgtaattatatgggtcggtgtcgtgtcggtgtc 34073337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 9107399 - 9107322
Alignment:
Q  42 aattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    |||||||| |||||| | | ||||||||||| |||||||| ||||| ||  |||||| ||||||| ||| ||||||||    
T  9107399 aattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatc 9107322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 9617461 - 9617510
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacg 88  Q
    ||||||||| | |||||||||| |||||||||||| ||||||| ||||||    
T  9617461 cataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtcggacacg 9617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 8365551 - 8365487
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacac 103  Q
    |||||||| || |||||| | | ||||||||||| ||||| || |||||||||||||||| ||||    
T  8365551 cataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacac 8365487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 30982910 - 30982824
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    |||| |||||| |||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||| |||  ||||||| |||||    
T  30982910 catatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaaga 30982824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 22234922 - 22234857
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacacc 104  Q
    ||||||||||| ||||| |||| ||||||||||| |||||||| |||||||||||||||| |||||    
T  22234922 cataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacacc 22234857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9996888 - 9996936
Alignment:
Q  71 gtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||||||||  |||||||||| |||| |||||| ||||||||    
T  9996888 gtctcggtgtcagacataacacgtgtccgacactggaacacacctaatc 9996936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 35157993 - 35157957
Alignment:
Q  74 tcggtgtcagacacgacacgtgtccaacaccggaaca 110  Q
    |||||||| |||||||||| |||||||||||||||||    
T  35157993 tcggtgtctgacacgacacatgtccaacaccggaaca 35157957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 35161096 - 35161132
Alignment:
Q  83 gacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  35161096 gacacgacacgtgtccgacaccggaacacacctaatc 35161132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 40179668 - 40179636
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcg 71  Q
    ||||||||||| |||||||||||||||||||||    
T  40179668 cataattcagtgtaattatatgcgtcggtgtcg 40179636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 44132674 - 44132634
Alignment:
Q  41 taattcagtataattatatgcgtcggtgtcgtctcggtgtc 81  Q
    |||||||||||||||||||| ||||||||||| | ||||||    
T  44132674 taattcagtataattatatgtgtcggtgtcgtgttggtgtc 44132634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 49431077 - 49431109
Alignment:
Q  74 tcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    |||||||| ||||||||||||||||||||||||    
T  49431077 tcggtgtcggacacgacacgtgtccaacaccgg 49431109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 35056896 - 35056976
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatct 120  Q
    |||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||| |||| | ||||  ||||||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatct 35056976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 44860344 - 44860426
Alignment:
Q  36 tcgcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaat 118  Q
    |||||||||||||| |||||||||| ||||||||||| | |||||  ||||||||| |||||| ||| ||| ||| |||||||    
T  44860344 tcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgacatcgggacacacctaat 44860426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 24975356 - 24975277
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatct 120  Q
    |||||||||| ||| |||||||||||||||||| || ||||||||||| ||| |||||| |||| || ||| | |||||||    
T  24975356 ataattcagtgtaaatatatgcgtcggtgtcgtgtccgtgtcagacac-acatgtgtccgacactgggacaaatctaatct 24975277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 27286324 - 27286238
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    ||||||| ||| |||||||| | |||  |||| | ||| |||| |||||||||| ||||| ||||||| ||||| ||||||||||||    
T  27286324 cataattaagtgtaattataggtgtcaatgtcatgtcgatgtcggacacgacacatgtccgacaccgggacatatctaatctaaaga 27286238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 34785014 - 34784956
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    ||||||| ||| |||||||||| ||||||||||| ||||| || |||||||||| ||||    
T  34785014 cataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtc 34784956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 4207882 - 4207954
Alignment:
Q  37 cgcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaaca 110  Q
    ||||||||| ||| |||||||||  |||||| |||| |||||||| |||||||||||||| | |||||| ||||    
T  4207882 cgcataatttagtgtaattatatt-gtcggtatcgtgtcggtgtcggacacgacacgtgttcgacaccgaaaca 4207954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 18841021 - 18840976
Alignment:
Q  74 tcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||||||||||| ||||| ||||||| ||| ||||||||    
T  18841021 tcggtgtcagacacgacacatgtccgacaccgggacacacctaatc 18840976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 9828071 - 9828138
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    ||||||||||| ||||| |||| ||||||||||| || |||||||||||||||||||||| |||||||    
T  9828071 cataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgg 9828138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 34371740 - 34371801
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaa 100  Q
    ||||||||||| |||||||||| ||||||||||| | |||||| || |||||||||||||||    
T  34371740 cataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtccaa 34371801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 44482257 - 44482310
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacac 92  Q
    ||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||    
T  44482257 cataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacac 44482310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 25361913 - 25361982
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaaca 110  Q
    ||||||||||| |||||||||| ||| ||||||| |||||||| |||||||||  ||||| |||||||||||    
T  25361913 cataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca--tgtccgacaccggaaca 25361982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 31694742 - 31694661
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatct 120  Q
    |||||||||||||||||| | | ||||||||||| |||||||| ||||| |||| | | | |||||||||||  ||||||||    
T  31694742 cataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatct 31694661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 5898274 - 5898242
Alignment:
Q  74 tcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    |||||||||||||||||||||||||||||||||    
T  5898274 tcggtgtcagacacgacacgtgtccaacaccgg 5898242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 21038110 - 21038161
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgac 90  Q
    ||||||||||| |||| ||||||||| ||||||| |||||||| ||||||||    
T  21038110 cataattcagtgtaatcatatgcgtcagtgtcgtgtcggtgtcggacacgac 21038161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 25934650 - 25934701
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    |||| |||||||||| |||||| |||| |||||||| |||||||||||||||    
T  25934650 cagtgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtc 25934701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 9629931 - 9629865
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    |||||||||| | |||||| | ||||||||||| ||| |||| |||||||||| ||||| |||||||    
T  9629931 ataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtccgacaccgg 9629865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 47989524 - 47989582
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    ||||||||||| |||||| | | ||||||||||| |||||||| |||||||||| ||||    
T  47989524 cataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtc 47989582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 40917800 - 40917856
Alignment:
Q  63 tcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    |||||||||| |||||||  |||||||||||||||| ||||||| |||  |||||||    
T  40917800 tcggtgtcgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatc 40917856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 26329411 - 26329355
Alignment:
Q  42 aattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtcc 98  Q
    |||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  26329411 aattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtcc 26329355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 24339669 - 24339749
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||| |||||| | | ||||||||||| |||||||| |||||||||||| ||| ||||||| |||  |||||||    
T  24339669 cataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatc 24339749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 21560530 - 21560611
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatct 120  Q
    ||||||||||| |||||| | | ||||||||||| ||||||||| |||||| || |||| ||||||| ||||  ||||||||    
T  21560530 cataattcagtgtaattacaagtgtcggtgtcgtatcggtgtcaaacacgatacatgtctaacaccgaaacacgcctaatct 21560611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 25822685 - 25822765
Alignment:
Q  42 aattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaa 122  Q
    |||||||| |||||| | | ||||||||||| ||||| || |||||||||||||||  ||| ||| |||| ||||||||||    
T  25822685 aattcagtgtaattacaagtgtcggtgtcgtatcggtatcggacacgacacgtgtctgacatcgggacatgcctaatctaa 25822765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 26033493 - 26033413
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||| |||||| | | |||||| |||| ||||||||||||| ||||||||||| | ||||  ||| ||||||||    
T  26033493 cataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatc 26033413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 11665472 - 11665401
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaaca 110  Q
    ||||||||||| |||||||| | |||| |||| | ||||||||  ||||||||||||||| |||||| ||||    
T  11665472 cataattcagtctaattataagtgtcgatgtcatgtcggtgtcgaacacgacacgtgtccgacaccgaaaca 11665401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 11072326 - 11072409
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    |||||||| ||||||||| ||  |||||||||| ||||| || ||||||| || || |||||||||||| | ||||||||| ||||    
T  11072326 ataattcaatataattatgtg--tcggtgtcgtgtcggtatctgacacgatacatgaccaacaccggaatacacctaatctgaaga 11072409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 32308147 - 32308213
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccg 105  Q
    ||||||||||| ||||| |||| ||| ||||||| |||||||  |||||||||| ||||| ||||||    
T  32308147 cataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgttggacacgacacatgtccgacaccg 32308213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 598259 - 598304
Alignment:
Q  74 tcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||||||||||||||||| ||||||| |||  |||||||    
T  598259 tcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatc 598304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 22484051 - 22484083
Alignment:
Q  38 gcataattcagtataattatatgcgtcggtgtc 70  Q
    ||||||||||||||||||||||| |||||||||    
T  22484051 gcataattcagtataattatatgtgtcggtgtc 22484083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 11685963 - 11686026
Alignment:
Q  36 tcgcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaa 100  Q
    |||||||||| ||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  11685963 tcgcataatttagtgtaattatatgtgtcggtgtcgt-tcggtgtcggacacgacacgtgtccaa 11686026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 21542057 - 21542124
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    ||||||||||| |||||| | | ||||||||||| |||||||| |||||||||||||||| |||||||    
T  21542057 cataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgg 21542124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 21814295 - 21814346
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    |||| |||||||||| ||||||||||| |||||||| |||||||||||||||    
T  21814295 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21814346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 21522777 - 21522863
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    ||||||||||| |||||| |   ||||||||||| |||||||| ||||||||||||||||  |||||| |||  ||||||| |||||    
T  21522777 cataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaaga 21522863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 21533343 - 21533429
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    ||||||||||| |||||| |   ||||||||||| |||||||| ||||||||||||||||  |||||| |||  ||||||| |||||    
T  21533343 cataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaaga 21533429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 3966533 - 3966593
Alignment:
Q  42 aattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaaca 102  Q
    |||||||| |||||||||| ||||||||||| || ||||| ||||| ||| ||||||||||    
T  3966533 aattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaaca 3966593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 6401532 - 6401583
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    |||| |||||||||| ||||||||||| || ||||| |||||||||||||||    
T  6401532 cagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtc 6401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 6035510 - 6035558
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacg 88  Q
    |||||||||| |||||||||  ||||||||||| |||||| ||||||||    
T  6035510 ataattcagtgtaattatatttgtcggtgtcgtgtcggtgacagacacg 6035558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 7677732 - 7677812
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    |||||||||||  ||||| | | ||||||||||| |||||||| |||||| ||| ||||| ||||||| |||  |||||||    
T  7677732 cataattcagtgcaattagaagtgtcggtgtcgtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 29447471 - 29447538
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    ||||||| ||| |||||||||| || |||||||| |||||||||||||||||| |||||| |||||||    
T  29447471 cataattaagtgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacaccgg 29447538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 29510333 - 29510256
Alignment:
Q  42 aattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||||||| | | |||||||| || |||||||| |||||||| ||||||| ||||||| ||| ||||||||    
T  29510333 aattcagtataattacaagtgtcggtgtagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatc 29510256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 11927118 - 11927055
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaaca 102  Q
    ||||||||||| |||||||||| ||||||||||| | ||||||| |||||||| || |||||||    
T  11927118 cataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacgacatgtatccaaca 11927055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 22652003 - 22652070
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    ||||||||| |||||||| | | ||||||||||| |||||||| ||||||||| |||||| |||||||    
T  22652003 cataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgg 22652070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 26902207 - 26902149
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    ||||||||||| |||||||||| ||||||||||| |  ||||| |||||||||||||||    
T  26902207 cataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtc 26902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 12570540 - 12570455
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    ||||||| ||| |||||||||| |||| ||| || |||||||||||||| |||||||||| ||||| | |||  |||||||| ||||    
T  12570540 cataattaagtgtaattatatgtgtcgatgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctgaaga 12570455  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 28385026 - 28384977
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacg 88  Q
    ||||||||||| |||||||||| ||||||||| | || ||||||||||||    
T  28385026 cataattcagtgtaattatatgtgtcggtgtcatgtcagtgtcagacacg 28384977  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 12570768 - 12570681
Alignment:
Q  37 cgcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    ||||||||| ||| |||||||||  || ||||| || |||||||||||||| |||||||||| ||||| | |||  |||||||| ||||    
T  12570768 cgcataattaagtgtaattatatatgttggtgt-gtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctgaaga 12570681  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 15816161 - 15816081
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||| ||| |||||||| | ||||||||||| | |||||| |||||||||||  ||| ||||||| |||  |||||||    
T  15816161 cataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatc 15816081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 24362234 - 24362174
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgt-cagacacgacacgtgtcc 98  Q
    ||||||||||| |||||||||| |||  |||||| ||||||| | ||||||||||||||||    
T  24362234 cataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtccggacacgacacgtgtcc 24362174  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 263404 - 263347
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgt 96  Q
    ||||||||||| |||||||| | ||| ||||||| |||||||||||||||||||||||    
T  263404 cataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgt 263347  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 15796325 - 15796240
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatctaaaga 125  Q
    |||||||||| |||||| |   ||||||||||| | |||||| ||||| ||||||||||||||||||||||  ||||||| |||||    
T  15796325 ataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaacacgcctaatccaaaga 15796240  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 8039866 - 8039800
Alignment:
Q  40 ataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    |||||||||| |||||||||| ||||||||||| |||||||| |||| || || ||||| |||||||    
T  8039866 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgg 8039800  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 16192782 - 16192729
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacac 92  Q
    ||||||||||| |||||||||| || | |||||| |||||||||||||||||||    
T  16192782 cataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacacgacac 16192729  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 13806270 - 13806316
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacac 92  Q
    ||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  13806270 cagtataattatatgtgtcggtgtcgtgtcggtgttagacacaacac 13806316  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 14209140 - 14209197
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgt 96  Q
    ||||||||||| |||||| | | ||| ||||||| |||||||| ||||||||||||||    
T  14209140 cataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 16192727 - 16192686
Alignment:
Q  77 gtgtcagacacgacacgtgtccaacaccggaacatacctaat 118  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  16192727 gtgtcagacacgacacgtgtctgacaccgggacatacctaat 16192686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 4987323 - 4987243
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||||||| |||||| | | || |||| ||| |||||||  |||||||||||||||| ||||||| |||  |||||||    
T  4987323 cataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatc 4987243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 28678330 - 28678378
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacac 87  Q
    ||||||| ||||||||| |||| ||||||||||| | ||||||||||||    
T  28678330 cataatttagtataattgtatgtgtcggtgtcgtgttggtgtcagacac 28678378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 9777 - 9721
Alignment:
Q  41 taattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    ||||||||| |||||||||| ||||||||||| | ||||||||||||||||| ||||    
T  9777 taattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtc 9721  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 53207 - 53274
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccgg 106  Q
    ||||||||||| |||||||| | ||||||| ||| |||||||| |||| ||||||||||| |||||||    
T  53207 cataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgg 53274  T

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Target: scaffold0376 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 6338 - 6410
Alignment:
Q  38 gcataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaaca 110  Q
    |||||||||| | |||||||||| ||||||||||| |||||||  | ||||||||| |||| || ||||||||    
T  6338 gcataattcaatgtaattatatgtgtcggtgtcgtatcggtgtggggcacgacacgggtccgacgccggaaca 6410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 44557 - 44493
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacac 103  Q
    ||||||||||| |||||||||| |||||| |||| |||||||  ||||| |||||||||| ||||    
T  44557 cataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtccgacac 44493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 241621 - 241701
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||| ||| |||||||  | ||||||||||| | |||||| |||||||||||||||| ||||||| |||  |||||||    
T  241621 cataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatc 241701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 6021 - 5970
Alignment:
Q  46 cagtataattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtc 97  Q
    |||| |||||||||| ||||||||||| ||||||||  ||||||||||||||    
T  6021 cagtgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtc 5970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 21070 - 21119
Alignment:
Q  39 cataattcagtataattatatgcgtcggtgtcgtctcggtgtcagacacg 88  Q
    ||||| || ||||||||||||| |||||| |||| |||||||||||||||    
T  21070 cataagtcggtataattatatgtgtcggtatcgtgtcggtgtcagacacg 21119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 21208 - 21248
Alignment:
Q  48 gtataattatatgcgtcggtgtcgtctcggtgtcagacacg 88  Q
    ||||||||||||| |||||| |||| |||||||||||||||    
T  21208 gtataattatatgtgtcggtatcgtgtcggtgtcagacacg 21248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 21337 - 21377
Alignment:
Q  48 gtataattatatgcgtcggtgtcgtctcggtgtcagacacg 88  Q
    ||||||||||||| |||||| |||| |||||||||||||||    
T  21337 gtataattatatgtgtcggtatcgtgtcggtgtcagacacg 21377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 2982 - 3035
Alignment:
Q  66 gtgtcgtctcggtgtcagacacgacacgtgtccaacaccggaacatacctaatc 119  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||  |||||||    
T  2982 gtgtcgtgtcggtatcagacacgacacgtgttcgacaccggaacacgcctaatc 3035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 17900 - 17848
Alignment:
Q  51 taattatatgcgtcggtgtcgtctcggtgtcagacacgacacgtgtccaacac 103  Q
    |||||||||| | ||||||||| |||||||  |||||||||||||||| ||||    
T  17900 taattatatgtgacggtgtcgtatcggtgttggacacgacacgtgtccgacac 17848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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