View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14821_high_10 (Length: 347)

Name: NF14821_high_10
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14821_high_10
NF14821_high_10
[»] chr8 (4 HSPs)
chr8 (1-97)||(27107359-27107455)
chr8 (1-98)||(26774977-26775074)
chr8 (31-97)||(33541860-33541926)
chr8 (28-98)||(15186178-15186248)
[»] chr6 (13 HSPs)
chr6 (1-97)||(3630326-3630422)
chr6 (1-97)||(3632398-3632494)
chr6 (2-97)||(13056949-13057044)
chr6 (2-98)||(13039508-13039604)
chr6 (10-98)||(24338941-24339029)
chr6 (9-97)||(22490415-22490503)
chr6 (28-97)||(13870840-13870909)
chr6 (28-95)||(10583884-10583951)
chr6 (28-70)||(20219939-20219981)
chr6 (57-102)||(26944921-26944966)
chr6 (61-97)||(12162024-12162060)
chr6 (18-70)||(25477056-25477108)
chr6 (65-101)||(3390128-3390164)
[»] chr7 (9 HSPs)
chr7 (10-98)||(21677795-21677883)
chr7 (2-97)||(27833098-27833193)
chr7 (9-100)||(24748343-24748434)
chr7 (9-95)||(21679759-21679845)
chr7 (29-97)||(44724330-44724398)
chr7 (31-97)||(22829105-22829171)
chr7 (28-97)||(39146455-39146524)
chr7 (219-281)||(6629662-6629725)
chr7 (65-97)||(11355010-11355042)
[»] chr3 (15 HSPs)
chr3 (9-97)||(5927236-5927324)
chr3 (28-95)||(1627171-1627238)
chr3 (28-97)||(7754063-7754132)
chr3 (2-97)||(28100503-28100598)
chr3 (9-102)||(36011522-36011615)
chr3 (1-97)||(43423904-43424000)
chr3 (31-97)||(28137765-28137831)
chr3 (1-98)||(8183154-8183250)
chr3 (1-102)||(43421875-43421976)
chr3 (29-95)||(28102491-28102558)
chr3 (58-97)||(53468963-53469002)
chr3 (57-98)||(13420687-13420728)
chr3 (57-97)||(562208-562248)
chr3 (57-97)||(25635122-25635162)
chr3 (57-98)||(25633230-25633271)
[»] chr2 (7 HSPs)
chr2 (31-97)||(22163419-22163485)
chr2 (2-101)||(3021835-3021933)
chr2 (2-97)||(15539940-15540035)
chr2 (29-99)||(11740010-11740080)
chr2 (9-98)||(14836970-14837058)
chr2 (9-95)||(34980050-34980136)
chr2 (66-97)||(38019884-38019915)
[»] chr4 (7 HSPs)
chr4 (28-97)||(6132647-6132716)
chr4 (5-97)||(38270451-38270543)
chr4 (31-97)||(47564498-47564564)
chr4 (51-97)||(27498965-27499011)
chr4 (61-97)||(2891134-2891170)
chr4 (9-70)||(3937678-3937739)
chr4 (65-98)||(18537997-18538030)
[»] chr1 (10 HSPs)
chr1 (9-97)||(50249045-50249133)
chr1 (31-96)||(25251749-25251814)
chr1 (10-97)||(17323785-17323872)
chr1 (1-95)||(18839311-18839404)
chr1 (31-97)||(25248988-25249054)
chr1 (31-97)||(31489727-31489793)
chr1 (28-97)||(17186619-17186688)
chr1 (65-97)||(17352797-17352829)
chr1 (57-97)||(18801069-18801109)
chr1 (65-97)||(31423403-31423435)
[»] chr5 (7 HSPs)
chr5 (31-97)||(695631-695697)
chr5 (41-94)||(2723698-2723751)
chr5 (37-97)||(20044757-20044817)
chr5 (36-97)||(24126579-24126640)
chr5 (1-97)||(20042770-20042866)
chr5 (9-70)||(10474794-10474856)
chr5 (29-80)||(17072619-17072670)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27107359 - 27107455
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  27107359 acagagtccaaaatcggccaccatgctctgaaaatcggccatcgattttcagcttccagaattctaatttcttcaattttgaggcactttcacaaca 27107455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26775074 - 26774977
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    ||||| ||||||||| | || | ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||    
T  26775074 acagattccaaaatcggtcaacgtgctctgaaaatcggccaccgattttctgctaccagaattccaatttcttcaattttgaggcactttcacaacat 26774977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 33541860 - 33541926
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  33541860 aaaatcggccaccgattttcagcttccagaattccaatttctttaattttgaggcactttcacaaca 33541926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 15186178 - 15186248
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    |||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  15186178 ctgaaaatcgacgaccgattttttgcttccataattcctatttcttcaattttgagtcactttcacaacat 15186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3630326 - 3630422
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  3630326 acagagtccaaaatcggccacaatgctctgaaaatcggccaccgattttcagcttctagaattccaatttcttcaattttgaggcactttcacaaca 3630422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 3632398 - 3632494
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||| |||||| |||| |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3632398 acagagtccaaaatcggccaccgtgctttgaaaatcgggcatcgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 3632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 13057044 - 13056949
Alignment:
Q  2 cagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||| ||||||| ||||||  || |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  13057044 cagagtgcaaaatcggccaccgagccctgaaaatcggccaccaattttctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 13056949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 13039604 - 13039508
Alignment:
Q  2 cagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    |||||| ||||||| ||||||  || ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||||    
T  13039604 cagagtgcaaaatcggccaccgagccctgaaaatcggccaccggttttctgcttccagaatttcaatttcttcaattttgaggcactttcacaacat 13039508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 24338941 - 24339029
Alignment:
Q  10 aaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    |||||| ||| || ||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  24338941 aaaatcggcctccgtgccctgaaaatcggccaccgattttcatcttccagaatttcaatttcttcaattttgaggcactttcacaacat 24339029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 22490503 - 22490415
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||| |||||| ||| |||||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  22490503 caaaatcggccaccgtgccctgaaaatcggccatcgattttcagctttcagaattctaatttcttcaattttgaggcactttcataaca 22490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 13870840 - 13870909
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||| |||||||||||  ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  13870840 ctgaaaatcgaccaccgattttctgcttccaaaattccaatttcttcaattttaaggcactttcacaaca 13870909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10583951 - 10583884
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaa 95  Q
    |||||||| | |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  10583951 ctgaaaatggaccaccggttttcagcttccagaattccaatttcttcaattttaaggcactttcacaa 10583884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 20219981 - 20219939
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaattt 70  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  20219981 ctgaaaatcggccaccgattttcagcttccataattccaattt 20219939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 26944966 - 26944921
Alignment:
Q  57 cagaattccaatttcttcaattttgaggcactttcacaacattttc 102  Q
    ||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  26944966 cagaactccaatttcttcaattttgagtcactttcacaacaatttc 26944921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 12162024 - 12162060
Alignment:
Q  61 attccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12162024 attccaatttctttaattttgaggcactttcacaaca 12162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 25477108 - 25477056
Alignment:
Q  18 ccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaattt 70  Q
    ||||| ||| ||||||||||||||||| ||||| |||||| ||||||||||||    
T  25477108 ccaccgtgccctgaaaatcggccaccggttttttgcttccggaattccaattt 25477056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 3390164 - 3390128
Alignment:
Q  65 caatttcttcaattttgaggcactttcacaacatttt 101  Q
    |||||||| |||||||||| |||||||||||||||||    
T  3390164 caatttctccaattttgagtcactttcacaacatttt 3390128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 21677883 - 21677795
Alignment:
Q  10 aaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    ||||||||||||  ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21677883 aaaatcagccactgtgccctgaaaatcggccaccgattttcagcttccaggattccaatttcttcaattttgaggcactttcacaacat 21677795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 27833098 - 27833193
Alignment:
Q  2 cagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||| |||||||||||||||  | ||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  27833098 cagagtgcaaaatcagccaccaaaccctgaaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaaca 27833193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 24748434 - 24748343
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacattt 100  Q
    ||||||| | |||| ||| ||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  24748434 caaaatcggtcaccgtgccctgaaaatcagccaccgattttcagcttccagaattctaattttttcaattttgagtcactttcacaacattt 24748343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 21679845 - 21679759
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaa 95  Q
    ||||||| |||||||||| ||  ||||||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||||    
T  21679845 caaaatcggccaccatgccctacaaatcggccaccgatgttcagcttccagaattccaatttcttaatttttgaggcactttcacaa 21679759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 44724398 - 44724330
Alignment:
Q  29 tgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  44724398 tgaaaatcggccaccgattttcagcttccagaatttcaattttttcaattttgaggcacgttcacaaca 44724330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 22829105 - 22829171
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||| ||||||   ||||||||||||||||||||||||||||||| |||||||||||||    
T  22829105 aaaatcggccactgattttctacttccagaattccaatttcttcaattttgagtcactttcacaaca 22829171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 39146455 - 39146524
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||| |||||| ||||  ||||||| |||||||||||||||||||||||| |||||||||||||    
T  39146455 ctgaaaatcgaccaccggttttctgcttccaaaattccaatttcttcaattttgagtcactttcacaaca 39146524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 6629725 - 6629662
Alignment:
Q  219 agtaacttcatgctctt--aatcattgtttaagcaaattgacatgcaaatgcatcattatagcac 281  Q
    |||||||||||||||||  ||||| | |||||||||||||||||||||| ||||| || ||||||    
T  6629725 agtaacttcatgctcttttaatcagt-tttaagcaaattgacatgcaaaggcatccttgtagcac 6629662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 11355042 - 11355010
Alignment:
Q  65 caatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||| |||||||||||||    
T  11355042 caatttcttcaattttgagtcactttcacaaca 11355010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 5927236 - 5927324
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||| |||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  5927236 caaaatcggccaccgtgctctgaaaatcagccaccgattttcagcttccaaaattccaatttcttcaattttaaggcactttcacaaca 5927324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 1627171 - 1627238
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaa 95  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1627171 ctgaaaatcggccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaa 1627238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 7754132 - 7754063
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7754132 ctgaaaatcggccagcgatttttagcttccagaattccaatttcttcaattttgagccactttcacaaca 7754063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 28100503 - 28100598
Alignment:
Q  2 cagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||| ||||||| |||||||  | |||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  28100503 cagagtgcaaaatcggccaccaatccctgaaaatcggccatcgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 28100598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 36011615 - 36011522
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacattttc 102  Q
    ||||||| |||||| |||  ||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36011615 caaaatcggccaccgtgccttgaaaattggccaccgattttcaccttccagatttccaatttcttcaattttgaggcactttcacaacaatttc 36011522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 43423904 - 43424000
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||| |||||| || |||| | ||||||||||| ||||   || ||||||||||||||||||||||||||||||||||||||||||    
T  43423904 acagagtccaaaatcggccaccgtggtctggatatcggccaccggttttctactaccagaattccaatttcttcaattttgaggcactttcacaaca 43424000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 28137765 - 28137831
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  28137765 aaaatcggccaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 28137831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 8183154 - 8183250
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    |||||||||||| || |||||| ||||||||||||||  ||| ||||||  |||  ||||||| ||||||||||||||||||||||||||||||||||    
T  8183154 acagagtccaaa-tcggccaccgtgctctgaaaatcgatcactgattttctgctatcagaatttcaatttcttcaattttgaggcactttcacaacat 8183250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 43421875 - 43421976
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacattt 100  Q
    ||||||||||||||| |||||| |  | |||||||||||||   |||||  ||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  43421875 acagagtccaaaatcggccaccgtagtttgaaaatcggccatttattttctgctacctgaattccaatttcttcaattttgaggcactttcacaacaatt 43421974  T
Q  101 tc 102  Q
    ||    
T  43421975 tc 43421976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 28102491 - 28102558
Alignment:
Q  29 tgaaaatcggccaccgatttttagcttccagaattccaa-tttcttcaattttgaggcactttcacaa 95  Q
    |||||||| ||| ||||||||  |||| ||||||||||| ||| ||||||||||||||||||||||||    
T  28102491 tgaaaatcagcccccgattttctgctttcagaattccaaatttattcaattttgaggcactttcacaa 28102558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 53468963 - 53469002
Alignment:
Q  58 agaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  53468963 agaattctaatttcttcaattttgaggcactttcacaaca 53469002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 13420687 - 13420728
Alignment:
Q  57 cagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  13420687 cagaactccaatttcttcaattttgagtcactttcacaacat 13420728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 562208 - 562248
Alignment:
Q  57 cagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  562208 cagaactccaatttcttcaattttgagtcactttcacaaca 562248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 25635162 - 25635122
Alignment:
Q  57 cagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  25635162 cagaactccaatttcttcaattttgagtcactttcacaaca 25635122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 25633271 - 25633230
Alignment:
Q  57 cagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    ||||| ||||||||||||||||||||  ||||||||||||||    
T  25633271 cagaactccaatttcttcaattttgaatcactttcacaacat 25633230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 22163419 - 22163485
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22163419 aaaatcggccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 22163485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 3021933 - 3021835
Alignment:
Q  2 cagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacatttt 101  Q
    |||||| ||||||| ||||||  || ||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3021933 cagagtgcaaaatc-gccaccgagccctgaaaatcggccacggatttcctgcttccagaattccaatttcttcaattttgaggcactttcacaacatttt 3021835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 15539940 - 15540035
Alignment:
Q  2 cagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||| ||||||| ||||||  ||  ||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  15539940 cagagtgcaaaatcggccaccgagccttgaaaatcggccatcgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaaca 15540035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 11740010 - 11740080
Alignment:
Q  29 tgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacatt 99  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  11740010 tgaaaatcggccaccgattttcaactttcagaattccaatttcttcaattttgaggcactttcacaacatt 11740080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 14837058 - 14836970
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaacat 98  Q
    ||||||| |||||| ||| ||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  14837058 caaaatcggccaccgtgccctgaaaa-cggccaccaattttcagcttccagaattctaatttcttcaattttgaggcactttcacaacat 14836970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 34980050 - 34980136
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaa 95  Q
    ||||||| |||||| ||  || ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||    
T  34980050 caaaatcggccaccgtgtcctaaaaatcggccaccgattttcagcttctagaattctaatttcttcaattttgaggcattttcacaa 34980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 38019915 - 38019884
Alignment:
Q  66 aatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||||||||||||||||    
T  38019915 aatttcttcaattttgaggcactttcacaaca 38019884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 6132716 - 6132647
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6132716 ctgaaaatcagccaccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 6132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 38270451 - 38270543
Alignment:
Q  5 agtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||| || | | |||| |||||||||||||||||||||  ||| |||||||| |||||||||||||||||||||||||||||||||    
T  38270451 agtccaaaatcggctatcgtgctttgaaaatcggccaccgattttctgctaccagaatttcaatttcttcaattttgaggcactttcacaaca 38270543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 47564564 - 47564498
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  47564564 aaaatcggccaccgattttctgcttccagaattctaatttcttcaattttgaggcactttcacaaca 47564498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 27499011 - 27498965
Alignment:
Q  51 agcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27499011 agcttccagaattccaatttcttcaattttgaggcactttcacaaca 27498965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 2891170 - 2891134
Alignment:
Q  61 attccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||||||||||||||||||||||||||    
T  2891170 attccaatttcttcaattttgaggcactttcacaaca 2891134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 3937678 - 3937739
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaattt 70  Q
    ||||||| ||||||  || ||||||||||||||||||||||  |||| ||||||||||||||    
T  3937678 caaaatcggccaccgagccctgaaaatcggccaccgattttctgctttcagaattccaattt 3937739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 18537997 - 18538030
Alignment:
Q  65 caatttcttcaattttgaggcactttcacaacat 98  Q
    ||||||||||||||||||| ||||||||||||||    
T  18537997 caatttcttcaattttgagtcactttcacaacat 18538030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 50249045 - 50249133
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||| |||||| ||| ||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50249045 caaaatcggccaccgtgccctgaaaatcagcggccgattttcagcttccagaattccaatttcttcaattttgaggcactttcacaaca 50249133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 25251749 - 25251814
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaac 96  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  25251749 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactttcacaac 25251814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 17323872 - 17323785
Alignment:
Q  10 aaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||| ||||||  || ||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  17323872 aaaatcggccaccgagccctgaaaatcggtcaccgattttctacttccagaattccaatttcttcaattttgaggcactttcacaaca 17323785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 18839404 - 18839311
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaa 95  Q
    ||||||||||||||| |||||| |||||||||| ||||||| |||||||  | | ||||||||||||||| ||||||||||||||||||||||||    
T  18839404 acagagtccaaaatcggccaccgtgctctgaaa-tcggccatcgattttctgttaccagaattccaatttattcaattttgaggcactttcacaa 18839311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 25248988 - 25249054
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||    
T  25248988 aaaatcggccaccgattttctgcttccagaattccaatttcttcaattttgaggcactatcacaaca 25249054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 31489793 - 31489727
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||| || |||||  ||||||||||||||||||||||||||||| |||||||||| |||||    
T  31489793 aaaatcggcccccaattttctgcttccagaattccaatttcttcaattttaaggcactttcgcaaca 31489727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 17186619 - 17186688
Alignment:
Q  28 ctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||| ||||||||||||  ||||||||| || ||||||||||||||||||| | |||||||||||    
T  17186619 ctgaaaatcagccaccgattttctgcttccagattttcaatttcttcaattttgagtcgctttcacaaca 17186688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 17352829 - 17352797
Alignment:
Q  65 caatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||| |||||||||||||    
T  17352829 caatttcttcaattttgagtcactttcacaaca 17352797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 18801069 - 18801109
Alignment:
Q  57 cagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||| ||||||| ||||||||||||| |||||||||||||    
T  18801069 cagaactccaattccttcaattttgagtcactttcacaaca 18801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 31423403 - 31423435
Alignment:
Q  65 caatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||||||||| |||||||||||||    
T  31423403 caatttcttcaattttgagtcactttcacaaca 31423435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 695697 - 695631
Alignment:
Q  31 aaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  695697 aaaatcggccaccaattttcagcttccagaatttcaatttcttcaattttgaggcactttcacaaca 695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 2723751 - 2723698
Alignment:
Q  41 accgatttttagcttccagaattccaatttcttcaattttgaggcactttcaca 94  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2723751 accgattttcagcttccagaattccaatttcttcaattttgaggcactttcaca 2723698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 20044817 - 20044757
Alignment:
Q  37 ggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  20044817 ggccaccgattttctgcttccagaattccaatttcttcaattttgagtcactttcacaaca 20044757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24126640 - 24126579
Alignment:
Q  36 cggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  24126640 cggccaccaattttcagcttctagaattccaatttcttcaattttgagacactttcacaaca 24126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 20042866 - 20042770
Alignment:
Q  1 acagagtccaaaatcagccaccatgctctgaaaatcggccaccgatttttagcttccagaattccaatttcttcaattttgaggcactttcacaaca 97  Q
    ||||||| |||| || |||||| ||| |||||||||||||| | |||||   |||||||||||||||||||||||||||| |  |||||||||||||    
T  20042866 acagagtgcaaattcggccaccgtgccctgaaaatcggccatcaattttcttcttccagaattccaatttcttcaattttaaatcactttcacaaca 20042770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 10474794 - 10474856
Alignment:
Q  9 caaaatcagccaccatgctctgaaaatcggccaccgattttt-agcttccagaattccaattt 70  Q
    ||||||| |||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  10474794 caaaatcggccaccgtgccctgaaaatcggccaccaatttttcagcttccagaattccaattt 10474856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 17072670 - 17072619
Alignment:
Q  29 tgaaaatcggccaccgatttttagcttccagaattccaatttcttcaatttt 80  Q
    ||||||||||||||||||||| ||||| || |||||||||||||| ||||||    
T  17072670 tgaaaatcggccaccgattttcagctttcaaaattccaatttctttaatttt 17072619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University