View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14821_high_19 (Length: 227)
Name: NF14821_high_19
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_high_19 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 14538443 - 14538630
Alignment:
| Q |
40 |
gcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattatt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14538443 |
gcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattttgtgcagaaatagcatttccgtcatatactttcgtcccccaaccattatt |
14538542 |
T |
|
| Q |
140 |
agttgattaatgatatcagaagtaatagttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538543 |
agttgattaatgatatcagaagtaataattctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttt |
14538630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 14553955 - 14554107
Alignment:
| Q |
69 |
aggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcaga-agtaatag |
167 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| ||| | ||||||||| || | ||| |||| ||||||||| || | |||| ||| | ||| ||| |
|
|
| T |
14553955 |
aggtggttgtttgattgattttgtgcataaatagtattggcatcatctactatcattcccgaacccttattagtttataactgatctcacacagtcatac |
14554054 |
T |
|
| Q |
168 |
ttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttc |
220 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| ||| |||||||||| | ||||||| |
|
|
| T |
14554055 |
ttttggtaatgtgttgtgaaaatgaaagagatgtatttcttgggaggcttttc |
14554107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14538386 - 14538425
Alignment:
| Q |
1 |
ccctttatggcgagcacagctgttgtgtcagtcagtctag |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14538386 |
ccctttatggcgagcacagctgttgtgtcagtcagtctag |
14538425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University