View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14821_high_3 (Length: 546)

Name: NF14821_high_3
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14821_high_3
NF14821_high_3
[»] chr4 (10 HSPs)
chr4 (75-527)||(33750310-33750768)
chr4 (183-391)||(33718945-33719153)
chr4 (183-389)||(33735618-33735824)
chr4 (195-390)||(33720976-33721171)
chr4 (442-520)||(33735871-33735949)
chr4 (88-155)||(33718850-33718917)
chr4 (98-164)||(33720864-33720930)
chr4 (444-520)||(33719203-33719279)
chr4 (111-164)||(33735540-33735593)
chr4 (457-520)||(33721214-33721280)
[»] chr7 (2 HSPs)
chr7 (201-253)||(6583050-6583102)
chr7 (201-253)||(6568891-6568943)
[»] chr6 (1 HSPs)
chr6 (198-244)||(13409875-13409921)
[»] chr1 (1 HSPs)
chr1 (189-247)||(44331866-44331925)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 75 - 527
Target Start/End: Original strand, 33750310 - 33750768
Alignment:
Q  75 ttagaaagaattgttccacctgcgaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagagnnnnnnnnnn 174  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  33750310 ttagaaagaattgttccacctgcgaacatagaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagagaaaaaacaaa 33750409  T
Q  175 nnnnnnngagagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttg 274  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750410 aacaaaagagagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttg 33750509  T
Q  275 gctcggaacattttccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggtt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750510 gctcggaacattttccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggtt 33750609  T
Q  375 gatgattcacttaagcagtcagaagtggttgctcctgatttagagaatgtaaaag------atgagaatgagaacgagaatatgaatcaagaaattcaaa 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||| ||||    
T  33750610 gatgattcacttaagcagtcagaagtggttgctcctgatttagagaatgtaaaagatgagaatgagaatgagaacgagaatatgaatcaagaaatgcaaa 33750709  T
Q  469 gtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggg 527  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33750710 gtgagacaaatattggatttgggaataatatggattgtgatttttgggataggcttggg 33750768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 183 - 391
Target Start/End: Original strand, 33718945 - 33719153
Alignment:
Q  183 agagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaa 282  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    ||||||||||||||||    
T  33718945 agagctaaaaagaagtatagaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaa 33719044  T
Q  283 cattttccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattc 382  Q
    | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||| | |||||||| ||    
T  33719045 cctttaccacggcggaggaagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatc 33719144  T
Q  383 acttaagca 391  Q
     ||||||||    
T  33719145 ccttaagca 33719153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 183 - 389
Target Start/End: Original strand, 33735618 - 33735824
Alignment:
Q  183 agagctaagaagaagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaa 282  Q
    ||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||| ||||||||   |||||||||||| ||||    
T  33735618 agagctaagaagaagtacagaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaa 33735717  T
Q  283 cattttccacggcggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattc 382  Q
    | ||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||| | |||||||| ||    
T  33735718 cctttaccacggcggaggaagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatc 33735817  T
Q  383 acttaag 389  Q
     ||||||    
T  33735818 gcttaag 33735824  T

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Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 195 - 390
Target Start/End: Original strand, 33720976 - 33721171
Alignment:
Q  195 aagtacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacgg 294  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||    ||||||||||| ||||| ||| ||||||    
T  33720976 aagtacagaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacgg 33721075  T
Q  295 cggaggaagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaagc 390  Q
    ||||||||||||| |||||||| |||||||| || ||||||||||| |||||||| ||||| || ||||||||| | |||||||| || |||||||    
T  33721076 cggaggaagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaagc 33721171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 442 - 520
Target Start/End: Original strand, 33735871 - 33735949
Alignment:
Q  442 acgagaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggatag 520  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||| || ||||| | |||||||||||||||||||    
T  33735871 acgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatag 33735949  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 33718850 - 33718917
Alignment:
Q  88 ttccacctgcgaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttc 155  Q
    |||||||  ||||||||||||||||||  ||||||||||| |||||||| ||||||||| ||||||||    
T  33718850 ttccaccaacgaacatggaaacctgccgcgaatgcaacatagcaggatgtttaggatgcaatttcttc 33718917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 33720864 - 33720930
Alignment:
Q  98 gaacatggaaacctgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagag 164  Q
    |||||| |||||||| | |||||||||||| |||||||| ||||||||| |||||||||| ||||||    
T  33720864 gaacatagaaacctgtcgggaatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 33720930  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 33719203 - 33719279
Alignment:
Q  444 gagaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggatag 520  Q
    |||||||||||||||||||| |||| ||| ||||  | ||| |||| |||||||| |||||||||||||| ||||||    
T  33719203 gagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttttggatag 33719279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 33735540 - 33735593
Alignment:
Q  111 tgccaggaatgcaacattgcaggatgcttaggatgcgatttcttcccagaagag 164  Q
    |||| |||||||||||| |||||||| ||||||||| |||||||||| ||||||    
T  33735540 tgccgggaatgcaacatagcaggatgtttaggatgcaatttcttccctgaagag 33735593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 520
Target Start/End: Original strand, 33721214 - 33721280
Alignment:
Q  457 aagaaattcaaagtgagacaaatatgggatttgggaataatatg---gattgtgatttttgggatag 520  Q
    ||||||| |||| ||||||||  ||||||||||||||||||| |   || |||||||||||||||||    
T  33721214 aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatag 33721280  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
Q  201 agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc 253  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  6583050 agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc 6583102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
Q  201 agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgaccc 253  Q
    |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  6568891 agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc 6568943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 13409875 - 13409921
Alignment:
Q  198 tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaat 244  Q
    ||||||||||||||||||||||||||||| |||||||| || |||||    
T  13409875 tacagaggagtgagacaaagaccatggggaaaatgggcagcagaaat 13409921  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 44331925 - 44331866
Alignment:
Q  189 aagaagaag-tacagaggagtgagacaaagaccatggggtaaatgggctgctgaaattcg 247  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||| || ||||||||    
T  44331925 aagaagaagatacagaggagtaagacagagaccatggggaaaatgggcagcagaaattcg 44331866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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