View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14821_high_6 (Length: 436)
Name: NF14821_high_6
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 29479298 - 29479682
Alignment:
| Q |
14 |
aatatatgagcaaaatgcatgtacttgtacatttagtgttgtccaatccaaacaaagcaaaatgcatgtatatatatgtttgaatatatgtactataaca |
113 |
Q |
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| T |
29479298 |
aatatatgagcaaaatgcatgtacctgtacatttagtgttgtccaatccaaacaaagaaaaatgcatgtatatatatgt------------actataaca |
29479385 |
T |
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| Q |
114 |
aaaattggtgggtgaatgctaattaataatctaaagtcctagaacctaagccgttattttggacataaggtaatgaacaaattaagaattttataactag |
213 |
Q |
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| T |
29479386 |
aaaattggtgggtgaatgctaattaataatctaaagtcctagaacctaagccgttattttggacataaggtaatgaa----------attttataactag |
29479475 |
T |
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| Q |
214 |
attagtttatgttattgagatttcttatgaacaaattaccaatgctatcgatttcgatttcaacattggatatataa-ttgagatttgttgcatttcagg |
312 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29479476 |
attagtttatattattgagatttcttatgaacaaattaccaatgctaaggatttcaatttcaacattggatatataaattgagatttgttgcatttcagg |
29479575 |
T |
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| Q |
313 |
tagactctctggaaatgttatcatgtctggtaatgtgcttttaaatggaaagaaaaggagattagactatggggttgtagtaagtaactaacatcttaca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29479576 |
tagactctctggaaatgttatcatgtctggtaatgtgcttttaaatggaaagaaaaggagattagactatggggttgtagtaagtaactaacatcttaca |
29479675 |
T |
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