View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14821_low_1 (Length: 685)
Name: NF14821_low_1
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 224 - 665
Target Start/End: Complemental strand, 49826043 - 49825598
Alignment:
| Q |
224 |
aatatttgtcattgcaatactaggaaatatccgcttgaggttcactatgcttttcttccttccttccaacaccgtccgctcactaaaatcatcctccgca |
323 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49826043 |
aatatttgtcattgcaatactaggaaatatctgcttgaggttcaccgtgcttttcttccttccttccaacaccgtccgctcactaaaatcatcctccgca |
49825944 |
T |
|
| Q |
324 |
tctaaacctgatattgatgttgctgttcaagcgctaaacaatctctaaatcgagatattgcttcaatcgctgctttctggttccagttccgattcgcgtg |
423 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
49825943 |
tctaaacctgatattgatgttgctgttcaagcgctaaacaatctctaagtcgagatatcccttcaatcactgctttctggttccagttccgattcgcgtg |
49825844 |
T |
|
| Q |
424 |
aagcttttcgtcaatctgttaacaatgcgcttgaacgccgtttgtttatattccatagtttaagacttatcgtgctgttgctggtttttatgattatggt |
523 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
49825843 |
aagcttttcgtcaatctgttaacaacgcgcttgaacgccgtttgtttatatttcgtagtttaagatttatcgtggtgttgctggtttttatgattatggt |
49825744 |
T |
|
| Q |
524 |
cctcctggttgtgccgttaaatctaatgtcatctccttttggcgtcaggtgaattgagtttttatgcact----gtgtaaaatggtttctcaaatggtat |
619 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49825743 |
cctcctgcttgtgccgttaaatctaatgtcctctccttttggcgtcaggtgaattgagtttttatgcactgacagtgtaaaatggtttctcaaatggtat |
49825644 |
T |
|
| Q |
620 |
aaaataatttccagattcagatttaaatggtttctcgaatggttta |
665 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49825643 |
aaaataatttacagattcagatttaaatggtttctcgaatggttta |
49825598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 453 - 590
Target Start/End: Complemental strand, 49235046 - 49234908
Alignment:
| Q |
453 |
cttgaacgccgtttgttt-atattccatagtttaagacttatcgtgctgttgctggtttttatgattatggtcctcctggttgtgccgttaaatctaatg |
551 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
49235046 |
cttgaacgccgtttgttttatattccttcgtttaagatttatcgcggtgttgctggtttttatgattatggtcctcctggttgtgctgttaaatctaacg |
49234947 |
T |
|
| Q |
552 |
tcatctccttttggcgtcaggtgaattgagtttttatgc |
590 |
Q |
| |
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|| || |||||||||||||||||||||||||| ||||| |
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| T |
49234946 |
tcctcatcttttggcgtcaggtgaattgagtttctatgc |
49234908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 49826133 - 49826075
Alignment:
| Q |
127 |
cgacaacttcaaccttaaatttttgttgaaattgctttgattaatgcatgttgcttcaa |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49826133 |
cgacaacttcaaccttaaatttttgttgaaattgctttgattaatgcatgttgcttcaa |
49826075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 384 - 573
Target Start/End: Complemental strand, 830477 - 830287
Alignment:
| Q |
384 |
cttcaatcgctgctttctggttccagttccgattcgcgtgaagcttttcgtcaatctgttaacaatgcgcttgaacgccgt-ttgtttatattccatagt |
482 |
Q |
| |
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|||||||| || || |||| |||| | |||||||| ||||| || ||||||||||| ||| ||| | |||||||| ||| || |||| ||||| | || |
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| T |
830477 |
cttcaatctcttctctctgcttccggctccgattctcgtgacgcatttcgtcaatccgttgttaatacacttgaacgtcgtcttttttacattccgtcgt |
830378 |
T |
|
| Q |
483 |
ttaagacttatcgtgctgttgctggtttttatgattatggtcctcctggttgtgccgttaaatctaatgtcatctccttttggcgtcaggt |
573 |
Q |
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|||| | ||| | | ||| ||||||||||||||||||||||| |||||||| || |||||||| ||||| |||| || ||||||||||| |
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| T |
830377 |
ttaaaatttactgcggtgtcgctggtttttatgattatggtccacctggttgcgcggttaaatccaatgttctctctttctggcgtcaggt |
830287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 289 - 594
Target Start/End: Complemental strand, 942102 - 941787
Alignment:
| Q |
289 |
ccaacaccgtccgctcactaaaatcatcctccgcatctaaacctgatattgatgttgctgttcaagcgctaaacaatctctaa---------------at |
373 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| || || |
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| T |
942102 |
ccaacaccgtccgttcactcaaatcatcctccgcatctaaacctgatatcgatgctgctgttcaagcgttaaacaatctcaaacttgagaaatcttccat |
942003 |
T |
|
| Q |
374 |
cgagatattgcttcaatcgctgctttctggttccagttccgattcgcgtgaagcttttcgtcaatctgttaacaatgcgcttgaacgccgtttgttt-at |
472 |
Q |
| |
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||||| || |||||||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
942002 |
cgagaaatcgcttcaatcgcttctctctggttcc------gattcgcgtgaagcatttcgtcaatctgttaacaatacgcttgaacgccgtttgttttat |
941909 |
T |
|
| Q |
473 |
attccatagtttaagacttatcgtgctgttgctggtttttatgattatggtcctcctggttgtgccgttaaatctaatgtcatctccttttggcgtcagg |
572 |
Q |
| |
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||||| | |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
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| T |
941908 |
attccttcgtttaagatttatcgtggtgttgctggtttttatgattatggtcctcctggttgtgccgttaaatctaacgtccttgccttttggcgtcagg |
941809 |
T |
|
| Q |
573 |
tgaattgagtttttatgcactg |
594 |
Q |
| |
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|||||||| ||| ||||||||| |
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| T |
941808 |
tgaattgaatttctatgcactg |
941787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 451 - 590
Target Start/End: Original strand, 50861622 - 50861762
Alignment:
| Q |
451 |
cgcttgaacgccgtttgttt-atattccatagtttaagacttatcgtgctgttgctggtttttatgattatggtcctcctggttgtgccgttaaatctaa |
549 |
Q |
| |
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|||||||||||||||||||| ||||||| | |||||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50861622 |
cgcttgaacgccgtttgttttatattccgtcgtttaagatttatcgcggtgttgctggttttaatgattatggtcctcctggttgtgccgttaaatctaa |
50861721 |
T |
|
| Q |
550 |
tgtcatctccttttggcgtcaggtgaattgagtttttatgc |
590 |
Q |
| |
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||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
50861722 |
cgtcctctccttttggcgtcaggtgaattgagtttctatgc |
50861762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 435 - 554
Target Start/End: Original strand, 47934361 - 47934481
Alignment:
| Q |
435 |
caatctgttaacaatgcgcttgaacgccgtttgttt-atattccatagtttaagacttatcgtgctgttgctggtttttatgattatggtcctcctggtt |
533 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||| | | |||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47934361 |
caatctgtttgcaatgcgcttgaacgccgtttgttttatatttcgttgtttaagatttatctctttgttgctggtttttatgattatggtcctcctggtt |
47934460 |
T |
|
| Q |
534 |
gtgccgttaaatctaatgtca |
554 |
Q |
| |
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||| ||||||||||| |||| |
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|
| T |
47934461 |
gtgttgttaaatctaacgtca |
47934481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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