View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14821_low_11 (Length: 340)
Name: NF14821_low_11
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_low_11 |
 | |
|
| [»] scaffold0334 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0334 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 16378 - 16717
Alignment:
| Q |
1 |
tctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacattattactcaacccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16378 |
tctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacattattactcaacccg |
16477 |
T |
|
| Q |
101 |
attttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaattggattgttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16478 |
attttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaattgaattgttgtt |
16577 |
T |
|
| Q |
201 |
gttggctgttccattgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctattgtt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16578 |
gttggctgttccattgttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtt |
16677 |
T |
|
| Q |
301 |
tggtgtttggtgttcgattccaattgcagttatgtttctt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16678 |
tggtgtttggtgttcgattccaattgcagttatgtttctt |
16717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 11177588 - 11177267
Alignment:
| Q |
1 |
tctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacattattactcaacccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177588 |
tctattttcgttcagcaatccaatttcttattactttcttactcaattccaattgttattacttattatattatatcgctgcacattattactcaacccg |
11177489 |
T |
|
| Q |
101 |
attttattttgcagcacttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaattggattgttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11177488 |
attttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattgaattg----- |
11177394 |
T |
|
| Q |
201 |
gttggctgttccattgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctattgtt |
300 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11177393 |
-------------ttgttgctgggctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtt |
11177307 |
T |
|
| Q |
301 |
tggtgtttggtgttcgattccaattgcagttatgtttctt |
340 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11177306 |
tggtgtttggtgttcgatttcaattgcagttatgtttctt |
11177267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University