View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14821_low_13 (Length: 316)
Name: NF14821_low_13
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 28264611 - 28264901
Alignment:
| Q |
15 |
atatcactatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagag |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264611 |
atatccctatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagag |
28264710 |
T |
|
| Q |
115 |
gtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28264711 |
gtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttatcatggcaccatcccagaagctt |
28264810 |
T |
|
| Q |
215 |
cacaagatttctatgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttc |
305 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
28264811 |
cacaagatttctatgtctcagttgactaataactttaacttcagttacatactctttctttccttgtcttgaccctctggatattttcttc |
28264901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 28294426 - 28294716
Alignment:
| Q |
15 |
atatcactatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagag |
114 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||| ||||| |
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| T |
28294426 |
atatccctatgaaccacacacctctcccattcttcatgtagataaagcaaaccagaagccaatccaagagctattttgtgccttacaccccaagaaagag |
28294525 |
T |
|
| Q |
115 |
gtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagctt |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
28294526 |
gtgttcttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccaacccaaaagctt |
28294625 |
T |
|
| Q |
215 |
cacaagatttctatgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttc |
305 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28294626 |
cacaagattcctatgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttc |
28294716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 28304628 - 28304918
Alignment:
| Q |
15 |
atatcactatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagag |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| | |||||||||||||||| ||||| ||||| |
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| T |
28304628 |
atatccctatgtaccacacacctctcccattcttcatgtagatacagcaaaccagaggccaatccaagagttattttgtgccttacaccccaagaaagag |
28304727 |
T |
|
| Q |
115 |
gtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagctt |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | ||||| |
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| T |
28304728 |
gtgttcttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaataagtagaaactcacctttgtcatggcaccagcctaagagctt |
28304827 |
T |
|
| Q |
215 |
cacaagatttctatgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttc |
305 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
28304828 |
cacaagattcctatgtctcagttgactaataactttaacttcagttacatactctttctttccttgtcttgaccctctggatattttcttc |
28304918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 28289125 - 28288835
Alignment:
| Q |
15 |
atatcactatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagag |
114 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||| |||||||| || |||||| |||||| ||||| |
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|
| T |
28289125 |
atatctctatgaaccacacacctctcccattcttcatgtagataaagtaccccaaaagccaatccaagagctattttatgtcttacactccaagaaagag |
28289026 |
T |
|
| Q |
115 |
gtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagctt |
214 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
28289025 |
gtgtcctttttccgaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcctaagagctt |
28288926 |
T |
|
| Q |
215 |
cacaagatttctatgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttc |
305 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
28288925 |
cacaagattcctatgtctcagctggctaataactttaacttcagttacatactctttcttcccttgtcttgaccctcttgatattttcttc |
28288835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 28279260 - 28278970
Alignment:
| Q |
15 |
atatcactatgtaccacacacctctcccattcttcatgtagataaagcacaccagaggccaagccaagtgctattttgtgccttacaatccaaggaagag |
114 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||| ||||| |
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| T |
28279260 |
atatccctatgtaccacacatttttcccattcttcatgtaaataaagcacaccagatgccaattcaagtgctattttgtgccttagactccaagaaagag |
28279161 |
T |
|
| Q |
115 |
gtgtccttttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcaccatcccagaagctt |
214 |
Q |
| |
|
|| | ||||||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||| || | | ||| |
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|
| T |
28279160 |
gtattcttttaccaaataaatgagaatccaggctaccgttaggcataaactcataaacaagaagaaactcacctttttcatggcaccaacctaacaactt |
28279061 |
T |
|
| Q |
215 |
cacaagatttctatgtctcagttgactaatgactttaacttcagttacatactctttctttccttgtcttgatcctcttgatattttcttc |
305 |
Q |
| |
|
||||||||| | ||||||| | | |||||||||||||||||||| |||||||||||||| |||||||| ||||| | |||||||||||| |
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|
| T |
28279060 |
cacaagattccggtgtctcaatgggctaatgactttaacttcagtaacatactctttcttcccttgtctagatcccttcgatattttcttc |
28278970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 28342030 - 28342110
Alignment:
| Q |
122 |
tttaccaaataaatgagaatcaagactaccatttggcatgaactcataaacaagtagaaactcacctttgtcatggcacca |
202 |
Q |
| |
|
||||||||||| |||| |||||||||| ||||| |||||| | ||||||||||||| || ||||| ||| ||||| ||||| |
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| T |
28342030 |
tttaccaaatagatgataatcaagacttccattaggcatgtattcataaacaagtaaaagctcacttttttcatgacacca |
28342110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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