View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14821_low_17 (Length: 249)

Name: NF14821_low_17
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14821_low_17
NF14821_low_17
[»] chr5 (6 HSPs)
chr5 (53-227)||(43379379-43379553)
chr5 (53-163)||(43378572-43378682)
chr5 (52-163)||(11336275-11336386)
chr5 (53-227)||(11343688-11343858)
chr5 (53-152)||(3636365-3636464)
chr5 (46-152)||(33529729-33529834)
[»] chr6 (3 HSPs)
chr6 (123-227)||(13208156-13208260)
chr6 (53-163)||(13207346-13207456)
chr6 (107-164)||(10838146-10838204)
[»] chr7 (11 HSPs)
chr7 (53-163)||(42252829-42252942)
chr7 (53-163)||(42253035-42253144)
chr7 (53-152)||(48204046-48204145)
chr7 (53-153)||(46294641-46294741)
chr7 (52-163)||(35752325-35752435)
chr7 (51-163)||(35753023-35753139)
chr7 (53-163)||(18947286-18947396)
chr7 (53-163)||(18948212-18948322)
chr7 (59-133)||(46295636-46295710)
chr7 (102-163)||(43492978-43493039)
chr7 (53-89)||(25675779-25675815)
[»] chr8 (11 HSPs)
chr8 (53-173)||(42578709-42578829)
chr8 (58-163)||(42503031-42503136)
chr8 (51-163)||(42503880-42503992)
chr8 (53-163)||(41889323-41889434)
chr8 (51-152)||(39308666-39308767)
chr8 (59-152)||(39309638-39309731)
chr8 (53-133)||(6462604-6462684)
chr8 (58-153)||(28584353-28584448)
chr8 (102-155)||(3572124-3572177)
chr8 (112-164)||(38443754-38443806)
chr8 (47-115)||(43235425-43235493)
[»] chr2 (6 HSPs)
chr2 (53-163)||(10148572-10148682)
chr2 (53-164)||(10147786-10147897)
chr2 (9-51)||(14538293-14538335)
chr2 (46-152)||(16871513-16871618)
chr2 (52-163)||(39062858-39062969)
chr2 (53-163)||(34229033-34229143)
[»] chr4 (5 HSPs)
chr4 (52-174)||(39310395-39310518)
chr4 (58-174)||(24484788-24484905)
chr4 (53-153)||(9483632-9483732)
chr4 (107-164)||(32158853-32158911)
chr4 (53-163)||(39311330-39311440)
[»] scaffold0151 (1 HSPs)
scaffold0151 (105-163)||(20792-20850)
[»] chr3 (5 HSPs)
chr3 (102-163)||(17057152-17057213)
chr3 (51-151)||(34936713-34936813)
chr3 (53-152)||(34329358-34329457)
chr3 (53-142)||(55444560-55444649)
chr3 (53-93)||(40613828-40613868)
[»] chr1 (1 HSPs)
chr1 (53-163)||(15668237-15668348)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 43379553 - 43379379
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  153 ggtttggaaaatcaattgtttagtaaataaaaagaagccacacgcacactcttctggttcaaagttcacacgacc 227  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43379453 ggtttggaaaatcaattgtttagtaaataaaaagaagccacgcgcacactcttctggttcaaagttcacacgacc 43379379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 43378572 - 43378682
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  153 ggtttggaaaa 163  Q
    |||||| ||||    
T  43378672 ggtttgaaaaa 43378682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 11336275 - 11336386
Alignment:
Q  52 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 151  Q
    |||||||||||||  |||||||| |||| ||||||||  |||  ||||||| |||| ||||||||||||  |||| ||||||||||||| || |||||||    
T  11336275 cgagttcatctttcttccatttaggaagcctccattttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaa 11336374  T
Q  152 aggtttggaaaa 163  Q
    ||||||||||||    
T  11336375 aggtttggaaaa 11336386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 227
Target Start/End: Complemental strand, 11343858 - 11343688
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||  |||||||||||||  ||||||||| ||||      |||||| ||| ||||||||| |||||||||||||||||   |  |||||| |    
T  11343858 gagttcatcttccctccatttatgaaacctccatttaccccaa-----ctcttatatgggtgacatgtggcaaaaataaaagcaagaattgggattaata 11343764  T
Q  153 ggtttgg-aaaatcaattgtttagtaaataaaaagaagccacacgcac--actcttctggttcaaagttcacacgacc 227  Q
    ||||||| |||| |||||||||| |||  |||||||||||||||||||  |||||||| ||||||| |||||||||||    
T  11343763 ggtttggaaaaagcaattgtttaataa--aaaaagaagccacacgcacttactcttctagttcaaacttcacacgacc 11343688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 3636464 - 3636365
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||||||||||||| ||||||||||||| |||| || || ||| ||||||  |||||||| | |||| |||||  ||||| | |||||||||    
T  3636464 gagttcatctttgctccatttaagaaggctccatttttcccttttcaactcatagatgactgacatgtggaaaaattaaaattaagggttgagattaaaa 3636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 33529729 - 33529834
Alignment:
Q  46 caaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaag 145  Q
    ||||| ||||||||||||||||||||||| ||||  || |||||||||||| || ||| ||||||  |||||||| || ||| |||||  ||||||| ||    
T  33529729 caaaaacgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtggc-aaactaaaacgaagggctgag 33529827  T
Q  146 attaaaa 152  Q
    |||||||    
T  33529828 attaaaa 33529834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 13208260 - 13208156
Alignment:
Q  123 caaaaataaaagcaagggctaagattaaaaggtttggaaaatcaattgtttagtaaataaaaagaagccacacgcacactcttctggttcaaagttcaca 222  Q
    |||||||||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13208260 caaaaataaaagcaagggttgggattaaaaggtttggaaaattaattgtttagtaaataaaaagaagccacgcgcacactcttctggttcaaagttcaca 13208161  T
Q  223 cgacc 227  Q
    |||||    
T  13208160 cgacc 13208156  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 13207346 - 13207456
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  153 ggtttggaaaa 163  Q
    | |||| ||||    
T  13207446 gatttgaaaaa 13207456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 10838146 - 10838204
Alignment:
Q  107 gatgtgtgacatgtagcaa-aaataaaagcaagggctaagattaaaaggtttggaaaat 164  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||| |||| ||||||    
T  10838146 gatgtgtgacatgtggcaacaaataaaaccaagggctaagattaaaaagtttagaaaat 10838204  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 42252829 - 42252942
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacat---gtagcaaaaataaaagcaagggctaagatta 149  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||| |||||||   || |||||||||||||||| |||| ||||||    
T  42252829 gagttcatctttgctccatttatgaagcctccatttaccacattccagcttttagatgcgtgacatatggtggcaaaaataaaagcaaaggctgagatta 42252928  T
Q  150 aaaggtttggaaaa 163  Q
    ||||||||||||||    
T  42252929 aaaggtttggaaaa 42252942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 42253144 - 42253035
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |  ||||||||||| |||||||| |||||||||    
T  42253144 gagttcatgtttgctccatttatgaagcctcaatttatcccattccaactcttagatgtgtgacat-tgtcaaaaataaaaacaagggctgagattaaaa 42253046  T
Q  153 ggtttggaaaa 163  Q
    | |||| ||||    
T  42253045 gatttgaaaaa 42253035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 48204145 - 48204046
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||||||| ||||| ||||||||||||| |||| || || ||| |||||   |||||||| |||||| |||||  ||||| | |||||||||    
T  48204145 gagttcatctttgctcaatttaagaaggctccatttttcccttttcacctcatagataactgacatgtggcaaaattaaaattaagggttgagattaaaa 48204046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 46294641 - 46294741
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| ||||||||||||||||   ||||||||||||||||| ||  |  || |||||||||||||| |  ||| ||||||| |||||| || ||||||||    
T  46294641 gagtgcatctttgctccatttgcaaaggctccatttatccctttttacttcatagatgtgtgacatatgacaataataaaatcaagggttaggattaaaa 46294740  T
Q  153 g 153  Q
    |    
T  46294741 g 46294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 35752325 - 35752435
Alignment:
Q  52 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 151  Q
    ||||||||| ||||||||||||  |   |||| |||||||||||| ||  || ||||||| |||||||| |||||||||||| ||| || |  |||||||    
T  35752325 cgagttcatgtttgctccattttggtttgctcaatttatcccatttcaa-tcatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaa 35752423  T
Q  152 aggtttggaaaa 163  Q
    ||||||| ||||    
T  35752424 aggtttgaaaaa 35752435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 35753139 - 35753023
Alignment:
Q  51 tcgagttcatctttgctccatttatgaaggctccatttat----cccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaaga 146  Q
    |||||| |||||||||||||||||||    ||| ||||||    |||||| ||  || ||||||| |||||||| |||||||||||| ||| ||||  ||    
T  35753139 tcgagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtggcaaaaataaaatcaatggctgtga 35753040  T
Q  147 ttaaaaggtttggaaaa 163  Q
    ||||||| |||||||||    
T  35753039 ttaaaagatttggaaaa 35753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 18947286 - 18947396
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| ||||||||||||||||| | || |||||||||| ||||| ||  || |||||||  ||||||| ||||| |||||| ||| || | |||||| ||    
T  18947286 gagtgcatctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaa 18947385  T
Q  153 ggtttggaaaa 163  Q
    || || |||||    
T  18947386 ggcttagaaaa 18947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 18948322 - 18948212
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| ||||||||||||||||| | || || ||||||| ||||| ||  || | ||||| |||||||| ||||| ||||||  || |||| |||||||||    
T  18948322 gagtgcatctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagattaaaa 18948223  T
Q  153 ggtttggaaaa 163  Q
    || || |||||    
T  18948222 ggcttagaaaa 18948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 46295710 - 46295636
Alignment:
Q  59 atctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaa 133  Q
    ||||||||||||||||| || |||||||||||||| || ||  |  |||||||||||||||| || |||| ||||    
T  46295710 atctttgctccatttatcaatgctccatttatcccttttcattttatagatgtgtgacatgtggctaaaacaaaa 46295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 43493039 - 43492978
Alignment:
Q  102 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 163  Q
    ||||||||||||||||  | |||||||| ||| ||| || | ||||||||||||||||||||    
T  43493039 tcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaa 43492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 25675815 - 25675779
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccattta 89  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25675815 gagttcatctttgctccatttatgttggctccattta 25675779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 42578709 - 42578829
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| |||||||||||||||||||   |||| ||||| |||||| ||  || ||||||| |||||||| |||||||||||| ||| |||| |||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  153 ggtttggaaaatcaattgttt 173  Q
    | ||||||||| || ||||||    
T  42578809 gatttggaaaagcacttgttt 42578829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 42503031 - 42503136
Alignment:
Q  58 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggttt 157  Q
    ||||||||||||||||| |    ||| ||||| |||||| ||  || |||||||||||||||||| |||||||||| ||| ||||  |||||||||||||    
T  42503031 catctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggttt 42503130  T
Q  158 ggaaaa 163  Q
    ||||||    
T  42503131 ggaaaa 42503136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 42503992 - 42503880
Alignment:
Q  51 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 150  Q
    |||||| ||||||||||||||||| |    ||| ||||| |||||||||  || |||||||||||||||| | ||||||||||  || ||||  ||||||    
T  42503992 tcgagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgacatgtggaaaaaataaaattaatggctgtgattaa 42503893  T
Q  151 aaggtttggaaaa 163  Q
    |||||||||||||    
T  42503892 aaggtttggaaaa 42503880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 41889323 - 41889434
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaat-aaaagcaagggctaagattaaa 151  Q
    |||| |||||||| |||||||| ||||||||||||||  || || ||    || |||||||||||||| |||||||| |||| |||||||| ||||||||    
T  41889323 gagtccatctttgttccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagggctgagattaaa 41889422  T
Q  152 aggtttggaaaa 163  Q
    ||| ||||||||    
T  41889423 agggttggaaaa 41889434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 39308666 - 39308767
Alignment:
Q  51 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 150  Q
    |||||| ||||||||||||||||| |||  ||||||||||||| || || ||| ||||||  |||||||| |||||| |||||  |||||||  ||||||    
T  39308666 tcgagtccatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgactgacatgtggcaaaactaaaatgaagggctgggattaa 39308765  T
Q  151 aa 152  Q
    ||    
T  39308766 aa 39308767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 39309731 - 39309638
Alignment:
Q  59 atctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||||||| |||  ||||||||||||| || || ||| ||||||  |||||||| ||||||  ||||  ||||||| |||||||||    
T  39309731 atctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaaacaaaaatgaagggctgagattaaaa 39309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 6462684 - 6462604
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaa 133  Q
    |||| |||||||||||||||||||   |||| ||||| |||||| ||  || ||||||| |||||||| ||||||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtggcaaaaataaaa 6462604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 28584448 - 28584353
Alignment:
Q  58 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaag 153  Q
    ||||||||||||||||| ||   |||||||||||||  |    ||||||||| ||||||| || |||||||||||| |||||||  ||||||||||    
T  28584448 catctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaag 28584353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 3572177 - 3572124
Alignment:
Q  102 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggt 155  Q
    ||||||||||||||||||| ||||||||||||  |||  ||| |||||||||||    
T  3572177 tcttagatgtgtgacatgtggcaaaaataaaacaaagtactaggattaaaaggt 3572124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 38443754 - 38443806
Alignment:
Q  112 gtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaat 164  Q
    ||||||||||| |||||||||| ||| | ||  ||||||||||||||||||||    
T  38443754 gtgacatgtagaaaaaataaaatcaatgactgtgattaaaaggtttggaaaat 38443806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 43235425 - 43235493
Alignment:
Q  47 aaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtga 115  Q
    ||||| |||| |||||||||||||||||  ||| ||||||||||||| || ||  || |||||||||||    
T  43235425 aaaatggagtgcatctttgctccatttaccaagcctccatttatcccttttcacttcatagatgtgtga 43235493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 10148682 - 10148572
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    ||||||| |||  ||||||||| |||| ||||||||| |||||| ||   ||| |||||||||||||| | |||||||||| |||||| | |||||||||    
T  10148682 gagttcaacttcactccatttaggaagcctccatttaccccatttcattccttggatgtgtgacatgtggtaaaaataaaatcaagggttgagattaaaa 10148583  T
Q  153 ggtttggaaaa 163  Q
     ||||||||||    
T  10148582 agtttggaaaa 10148572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 10147786 - 10147897
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    ||||||| |||  ||||| ||| |||| |||||||||||||||| ||    || |||||||||||||| |||||||||||| |||| | | |||||||||    
T  10147786 gagttcaacttcactccagttaggaagcctccatttatcccatttcattcgttggatgtgtgacatgtggcaaaaataaaatcaagcgttgagattaaaa 10147885  T
Q  153 ggtttggaaaat 164  Q
     |||||||||||    
T  10147886 agtttggaaaat 10147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 14538335 - 14538293
Alignment:
Q  9 aatataaaatgaaagaactcggcaattcatgtctggtcaaaat 51  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  14538335 aatataaaatgaaagaactcggcgattcatgtctggtcaaaat 14538293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 16871618 - 16871513
Alignment:
Q  46 caaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaag 145  Q
    ||||| ||||||||||||||||||||||| ||||  || |||||||||||| || ||| ||||||  |||||||| || ||| |||||  ||||||| ||    
T  16871618 caaaaacgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtggc-aaactaaaacgaagggctgag 16871520  T
Q  146 attaaaa 152  Q
    |||||||    
T  16871519 attaaaa 16871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 163
Target Start/End: Complemental strand, 39062969 - 39062858
Alignment:
Q  52 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 151  Q
    ||||| |||||||| ||||||||||   | || ||||| || ||| ||  || ||||||| |||||||| |||| ||||||| ||| ||||| |||||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtggcaacaataaaatcaatggctaggattaaa 39062870  T
Q  152 aggtttggaaaa 163  Q
    ||||||||||||    
T  39062869 aggtttggaaaa 39062858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 34229143 - 34229033
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||||  |  || |||||||||||||||| | |||||||||| ||| |||| |||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  153 ggtttggaaaa 163  Q
    | |||| ||||    
T  34229043 gctttgaaaaa 34229033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 39310395 - 39310518
Alignment:
Q  52 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 151  Q
    ||||| ||||||||||||||||| ||   ||| |||||||||||| ||  |  ||||||| |||||||| | |||||||||| ||| |||| ||||||||    
T  39310395 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 39310494  T
Q  152 aggtttggaaaat-caattgttta 174  Q
    || |||| ||||| ||||||||||    
T  39310495 agctttgaaaaatgcaattgttta 39310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 24484788 - 24484905
Alignment:
Q  58 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggttt 157  Q
    ||||||||||||||||| ||   ||| |||||||| ||| ||  |  |||||||||||||||| | |||||||||| ||| |||| |||||||||| |||    
T  24484788 catctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaagcttt 24484887  T
Q  158 ggaaaat-caattgttta 174  Q
    | ||||| ||||||||||    
T  24484888 gaaaaatgcaattgttta 24484905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 9483732 - 9483632
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| ||||||||||||||||   |||| |||||||||||| || ||  || |||||||||||||||| || | |||||||  ||||| || ||||||||    
T  9483732 gagtgcatctttgctccatttgcaaaggttccatttatcccttttcacttcatagatgtgtgacatgtggccataataaaattaagggttaggattaaaa 9483633  T
Q  153 g 153  Q
    |    
T  9483632 g 9483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 32158853 - 32158911
Alignment:
Q  107 gatgtgtgacatgtagcaaaa-ataaaagcaagggctaagattaaaaggtttggaaaat 164  Q
    |||||||||||||||||||||  ||||| |||||||  |||||||||||||| ||||||    
T  32158853 gatgtgtgacatgtagcaaaagttaaaaccaagggcagagattaaaaggtttagaaaat 32158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 39311440 - 39311330
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||||  |  || |||||||||||||||| | |||||||||| |||  ||| |||||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaatcaattgctgagattaaaa 39311341  T
Q  153 ggtttggaaaa 163  Q
    | |||| ||||    
T  39311340 gctttgaaaaa 39311330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 20792 - 20850
Alignment:
Q  105 tagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 163  Q
    |||||||||||||||| | |||||||||| ||| |||| ||||||||||||||||||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttggaaaa 20850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 17057152 - 17057213
Alignment:
Q  102 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 163  Q
    |||||||||||||||| || |||||||| ||| ||| || | ||||||||||||||||||||    
T  17057152 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaa 17057213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 34936713 - 34936813
Alignment:
Q  51 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 150  Q
    |||||| |||||||||||||||||  |   ||||||||||||| || ||  || ||||| |||||||||| |||||||||||| ||| ||||  ||||||    
T  34936713 tcgagtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaatggcttggattaa 34936812  T
Q  151 a 151  Q
    |    
T  34936813 a 34936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 34329358 - 34329457
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 152  Q
    |||||||||||||||||||||| |   |||| |||||||||||||||   | ||||||| || ||||| ||||||| |||  |||||| | |||||||||    
T  34329358 gagttcatctttgctccatttaggcgtgctcaatttatcccattccaagacatagatgtatgtcatgtggcaaaaacaaattcaagggttgagattaaaa 34329457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 55444649 - 55444560
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggct 142  Q
    |||| |||||||||| |||||| ||| |||||||||||||| || ||  |  | |||||||||||||| |||||  ||||| ||||||||    
T  55444649 gagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggct 55444560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 40613868 - 40613828
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatccc 93  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccc 40613828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 15668348 - 15668237
Alignment:
Q  53 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaat-aaaagcaagggctaagattaaa 151  Q
    |||| ||||||||||||||||| ||||||||||||||  || || ||    || |||||||||||||| |||||||| |||| |||| | |  |||||||    
T  15668348 gagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagtgatgggattaaa 15668249  T
Q  152 aggtttggaaaa 163  Q
    ||| ||||||||    
T  15668248 agggttggaaaa 15668237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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