View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14821_low_2 (Length: 585)

Name: NF14821_low_2
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14821_low_2
NF14821_low_2
[»] chr8 (4 HSPs)
chr8 (12-569)||(37562304-37562867)
chr8 (12-142)||(13934962-13935092)
chr8 (78-106)||(1487662-1487690)
chr8 (94-142)||(37562969-37563017)
[»] chr3 (3 HSPs)
chr3 (20-569)||(51421159-51421706)
chr3 (33-142)||(51420891-51421000)
chr3 (78-148)||(49287772-49287844)
[»] chr1 (3 HSPs)
chr1 (20-569)||(38931331-38931878)
chr1 (33-142)||(38932037-38932146)
chr1 (264-316)||(52747018-52747070)
[»] chr2 (2 HSPs)
chr2 (78-148)||(4386099-4386171)
chr2 (19-69)||(36391654-36391704)
[»] chr5 (1 HSPs)
chr5 (83-132)||(32944403-32944452)
[»] chr4 (2 HSPs)
chr4 (83-132)||(33370794-33370843)
chr4 (78-145)||(43079245-43079311)
[»] chr7 (3 HSPs)
chr7 (78-148)||(35771152-35771222)
chr7 (78-136)||(35770359-35770419)
chr7 (83-132)||(32548590-32548641)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 12 - 569
Target Start/End: Original strand, 37562304 - 37562867
Alignment:
Q  12 tagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcac 111  Q
    |||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  37562304 tagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcac 37562403  T
Q  112 tatcttccactagcatctctctccttcatcccca--------ccaccaggaacaccatgagaactatagtttttaccaatcagattcaaaattttaacaa 203  Q
    |||||||||||| |||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37562404 tatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccatgagaactatagtttttaccaatcagattcaaaattttaacaa 37562503  T
Q  204 ttaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaaatatattctca 303  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37562504 tcaatattccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaaatatattctca 37562603  T
Q  304 acctctggctgacggaagagttgggtcttgaataatagaaggaacatataaaaattcacacaggttagcatacaaattcacacagtgttgtggctaattt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  37562604 acctctggctgacggaagagttgggtcttgaataatagaaggaacatataaaaattcacacaggttagcatacaaattcacagagtgttgtgactaattt 37562703  T
Q  404 cttttggaagnnnnnnnnnnnnnnnnnnntatgtattcgtgcagtcaggttaagttagctgccgcagcactcaacaaatacaaatgcagaggttagattt 503  Q
    ||||||||||                   |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  37562704 cttttggaag--aaaaaatggaaaaaaaatatgtattcgtgcagtcaggttaagttagctgcctcagcactcaacaaatacaaatggagaggttagattt 37562801  T
Q  504 gtggtctaataatgaaagggaagcttagattgctccaaatctgaaatccacttcatatataataat 569  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37562802 gtggtctaataatggaagggaagcttagattgctccaaatctgatatccacttcatatataataat 37562867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 13935092 - 13934962
Alignment:
Q  12 tagcataggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcac 111  Q
    |||||| |||||||| | || ||||||||||| ||||| ||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||    
T  13935092 tagcatgggaaaggaaagttgttttccaccataggaaagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcac 13934993  T
Q  112 tatcttccactagcatctctctccttcatcc 142  Q
    |||||||||||| ||||||| || |||||||    
T  13934992 tatcttccactaccatctctttcattcatcc 13934962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 106
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  78 ttatcatacactctcaacactatattttt 106  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 37563017 - 37562969
Alignment:
Q  94 acactatatttttgtcactatcttccactagcatctctctccttcatcc 142  Q
    ||||||||||||||||||||||||||  || ||||||| || |||||||    
T  37563017 acactatatttttgtcactatcttccgataccatctctttcattcatcc 37562969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 51421706 - 51421159
Alignment:
Q  20 gaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcactatcttcc 119  Q
    |||||| ||||| ||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51421706 gaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatatttttgtcactatcttcc 51421607  T
Q  120 actagcatctctctccttcatccccacca--------ccaggaacaccatgagaactatagtttttaccaatcagattcaaaattttaacaattaatatt 211  Q
    |||| ||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51421606 actaccatctctctccttcatccccaccaacccaccaccagcaacaccatgagaactatagtttttaccaatcagattcaaaattttaacaatcaatatt 51421507  T
Q  212 ccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaaatatattctcaacctctgg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51421506 ccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgaggaaaatatattctcaacctctgg 51421407  T
Q  312 ctgacggaagagttgggtcttgaataatagaaggaacatataaaaattcacacaggttagcatacaaattcacacagtgttgtggctaatttcttttgga 411  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||||||||    
T  51421406 ctgacggaacagttgggtcttgaataatagaaggaacatataaaaatttacacaagttagcatacaaattcacacactattgtgactaatttcttttgga 51421307  T
Q  412 agnnnnnnnnnnnnnnnnnnntatgtattcgtgcagtcaggttaagttagctgccgcagcactca--acaaatacaaatgcagaggttagatttgtggtc 509  Q
    ||                   ||||||||||||||||||||||| ||||| |||| |||||||||  |||||||||||||||||||||||||||||||||    
T  51421306 ag------------aaaaaaatatgtattcgtgcagtcaggttaggttagttgcctcagcactcaacacaaatacaaatgcagaggttagatttgtggtc 51421219  T
Q  510 taataatgaaagggaagcttagattgctccaaatctgaaatccacttcatatataataat 569  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51421218 taataatggaagggaagcttagattgctccaaatctgatatccacttcatatataataat 51421159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 51420891 - 51421000
Alignment:
Q  33 ttttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcactatcttccactagcatctctc 132  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  51420891 ttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctt 51420990  T
Q  133 tccttcatcc 142  Q
    || |||||||    
T  51420991 tcattcatcc 51421000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 49287772 - 49287844
Alignment:
Q  78 ttatcatacactctcaacactatatttt--tgtcactatcttccactagcatctctctccttcatccccacca 148  Q
    |||||||||||||||||||| | |||||  |||||||||||||||| | |||| |||||||||||||| ||||    
T  49287772 ttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatccctacca 49287844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Original strand, 38931331 - 38931878
Alignment:
Q  20 gaaaggagaattattttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcactatcttcc 119  Q
    |||||| ||||| ||| ||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38931331 gaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttcc 38931430  T
Q  120 actagcatctctctccttcatcccca--------ccaccaggaacaccatgagaactatagtttttaccaatcagattcaaaattttaacaattaatatt 211  Q
    |||| |||||||||||||||||||||        ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38931431 actaccatctctctccttcatccccaccaacccaccaccagcaacaccatgagaactatagtttttaccaatcagattcaaaattttaacaatcaatatt 38931530  T
Q  212 ccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgagcaaaatatattctcaacctctgg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38931531 ccatgaacttactttttgcaattcaaagtaatcaatccttgcaggacactatataggaacaaattgtttgatttgaggaaaatatattctcaacctctgg 38931630  T
Q  312 ctgacggaagagttgggtcttgaataatagaaggaacatataaaaattcacacaggttagcatacaaattcacacagtgttgtggctaatttcttttgga 411  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||  ||||||||||||||    
T  38931631 ctgacggaacagttgggtcttgaataatagaaggaacatataaaaatttacacaagttagcatacaaattcacacactattgtgattaatttcttttgga 38931730  T
Q  412 agnnnnnnnnnnnnnnnnnnntatgtattcgtgcagtcaggttaagttagctgccgcagcactca--acaaatacaaatgcagaggttagatttgtggtc 509  Q
    ||                   ||||||||||||||||||||||| ||||| |||| |||||||||  |||||||||||||||||||||||||||||||||    
T  38931731 ag------------aaaaaaatatgtattcgtgcagtcaggttaggttagttgcctcagcactcaacacaaatacaaatgcagaggttagatttgtggtc 38931818  T
Q  510 taataatgaaagggaagcttagattgctccaaatctgaaatccacttcatatataataat 569  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38931819 taataatggaagggaagcttagattgctccaaatctgatatccacttcatatataataat 38931878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 38932146 - 38932037
Alignment:
Q  33 ttttccaccatgggaaaatcaattttaaccattaaatctacaattttatcatacactctcaacactatatttttgtcactatcttccactagcatctctc 132  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  38932146 ttttccaccataggaaagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctt 38932047  T
Q  133 tccttcatcc 142  Q
    || |||||||    
T  38932046 tcattcatcc 38932037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 52747018 - 52747070
Alignment:
Q  264 ataggaacaaattgtttgatttgagcaaaatatattctcaacctctggctgac 316  Q
    |||||||||| |||||||||||||| |||| ||||| |||||||||| |||||    
T  52747018 ataggaacaatttgtttgatttgaggaaaagatattttcaacctctgactgac 52747070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 4386171 - 4386099
Alignment:
Q  78 ttatcatacactctcaacactata--tttttgtcactatcttccactagcatctctctccttcatccccacca 148  Q
    |||||||||||||||||||||| |  |||||||||||||||||||| | |||| |||||||||||||||||||    
T  4386171 ttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatccccacca 4386099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 36391704 - 36391654
Alignment:
Q  19 ggaaaggagaattattttccaccatgggaaaatcaattttaaccattaaat 69  Q
    ||||||| || || ||||||||||||||||| | |||||||||||||||||    
T  36391704 ggaaaggggagttgttttccaccatgggaaagtaaattttaaccattaaat 36391654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 32944452 - 32944403
Alignment:
Q  83 atacactctcaacactatatttttgtcactatcttccactagcatctctc 132  Q
    |||||| |||||||||| ||| ||||||||||||||||||| ||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctctc 32944403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 33370843 - 33370794
Alignment:
Q  83 atacactctcaacactatatttttgtcactatcttccactagcatctctc 132  Q
    |||||| |||||||||| ||| ||||||||||||||||||| ||||||||    
T  33370843 atacaccctcaacactagattattgtcactatcttccactaccatctctc 33370794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 43079245 - 43079311
Alignment:
Q  78 ttatcatacactctcaacactatatttttgtcactatcttccactagcatctctctccttcatcccca 145  Q
    ||||||| |||||||||||||||| |||| || ||||||||||  | ||||||||||| |||||||||    
T  43079245 ttatcatgcactctcaacactata-ttttatcgctatcttccatcatcatctctctccctcatcccca 43079311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 35771222 - 35771152
Alignment:
Q  78 ttatcatacactctcaacactata--tttttgtcactatcttccactagcatctctctccttcatccccacca 148  Q
    |||| ||||||||||||||| |||  |||||||||||||  ||||| | |||| |||||||||||||||||||    
T  35771222 ttattatacactctcaacaccataattttttgtcactat--tccacaaccatcactctccttcatccccacca 35771152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 35770359 - 35770419
Alignment:
Q  78 ttatcatacactctcaacactata--tttttgtcactatcttccactagcatctctctcct 136  Q
    |||||||||||||||||||| | |  |||||||||||||||||||| | |||| |||||||    
T  35770359 ttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatcactctcct 35770419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 32548641 - 32548590
Alignment:
Q  83 atacactctcaacactatatt--tttgtcactatcttccactagcatctctc 132  Q
    |||||| ||||||| ||||||  |||||||||||||||||||| ||||||||    
T  32548641 atacaccctcaacattatattattttgtcactatcttccactaccatctctc 32548590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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