View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14821_low_24 (Length: 208)

Name: NF14821_low_24
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14821_low_24
NF14821_low_24
[»] chr4 (2 HSPs)
chr4 (113-208)||(49928740-49928835)
chr4 (13-73)||(49928643-49928703)
[»] chr2 (1 HSPs)
chr2 (13-68)||(13696049-13696104)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 49928740 - 49928835
Alignment:
Q  113 caagtattgtaacaatggtacaaaatctcatttccctctgctacacatttttcctcaggcaaatgcatgtctaacaaatgcagcaaagagagaagc 208  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49928740 caagtattgtaacaatggtacaaaatctcatttccctctgctgcacatttttcctcaggcaaatgcatgtctaacaaatgcagcaaagagagaagc 49928835  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 49928643 - 49928703
Alignment:
Q  13 aagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttttgtca 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49928643 aagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttttgtca 49928703  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 13696104 - 13696049
Alignment:
Q  13 aagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttt 68  Q
    ||||| |||||||| || ||||||||||| ||||| ||||| ||||||||||||||    
T  13696104 aagaataaacatcccaaggctgaaattgcattcaagcttgtctctgaggttagttt 13696049  T

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