View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14821_low_5 (Length: 507)
Name: NF14821_low_5
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 51753614 - 51754094
Alignment:
| Q |
18 |
atcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753614 |
atcttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatg |
51753713 |
T |
|
| Q |
118 |
ctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaattctggctcccaacctcaatttccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753714 |
ctttcaacagcttctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaattctggctcccaacctcaatttccc |
51753813 |
T |
|
| Q |
218 |
ttttactgtatctgttatctttggtccaagtctcactgcagggtaaaataacagtttcaagctatcaggtacaactatttttggaattaatctaagctta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753814 |
ttttactgtatctgttatctttggtccaagtctcactgcagggtaaaataacagtttcaagctatcaggtacaactatttttggaattaatctaagctta |
51753913 |
T |
|
| Q |
318 |
gtagttttggaagctattacaagatatttgcattttcatcaagtaccattacaaagtgcttgttccatgccttg-aacaaagcaaaagtgaaaaattgaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
51753914 |
gtagttttggaagctattacaagatatttgcattttcatcaagtaccattacaaagtgcttgttccatgccttgaaactaagcaaaagtgaaaaattgaa |
51754013 |
T |
|
| Q |
417 |
gataggtcttccaagattacataccatgctctcggataccatgtgcaaaaccatcatcttttcttccaaacatgttcatct |
497 |
Q |
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| T |
51754014 |
gataggtcttccaagattacataccatgctctcggataccatgtgcaaaaccatcatcttttcttccaaacatgttcatct |
51754094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 12196143 - 12196369
Alignment:
| Q |
31 |
tctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagctt |
130 |
Q |
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||||||||||||| |||| ||| | ||| || |||||||| |||||||||| |||||| ||||||||||||| ||||| || |||||||| | ||| | |
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| T |
12196143 |
tctcactacaaaaggcaattttattagttgatatgaagagtaggcctgctagaggaccagatgttgttgatagataacattgagatgcttttagtagcct |
12196242 |
T |
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| Q |
131 |
ctctccatctttaacactaaaaagttccataaacactttttctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatct |
230 |
Q |
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|||||||||||| |||||||| |||| ||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || |||| || ||||| |||||||| |
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| T |
12196243 |
ctctccatcttttacactaaatagttgcatgaacaccttttccactcctccaacttgaagaattctagctcctaagctcagctttcctttcactgtatcg |
12196342 |
T |
|
| Q |
231 |
gttatctttggtccaagtctcactgca |
257 |
Q |
| |
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||||| ||||| |||||| |||||||| |
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| T |
12196343 |
gttatgtttggcccaagtttcactgca |
12196369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 51766384 - 51766496
Alignment:
| Q |
21 |
ttgatggatttctcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctt |
120 |
Q |
| |
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||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||| ||||||| |
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| T |
51766384 |
ttgatggatttgtcactacagaaagcaattttgtgagtggaaatgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctt |
51766483 |
T |
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| Q |
121 |
tcaacagcttctc |
133 |
Q |
| |
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||||||||||||| |
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| T |
51766484 |
tcaacagcttctc |
51766496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 497
Target Start/End: Complemental strand, 5522949 - 5522848
Alignment:
| Q |
396 |
aagcaaaagtgaaaaattgaagataggtcttccaagattacataccatgctctcggataccatgtgcaaaaccatcatcttttcttccaaacatgttcat |
495 |
Q |
| |
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||||||| |||||| ||||||||| |||| ||||||||||||||||||| ||| ||||||||||||| ||| | |||||||||||||||||||| |
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| T |
5522949 |
aagcaaaggtgaaacattgaagattaatctttggagattacataccatgctcttggactccatgtgcaaaactgtcaccctttcttccaaacatgttcat |
5522850 |
T |
|
| Q |
496 |
ct |
497 |
Q |
| |
|
|| |
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|
| T |
5522849 |
ct |
5522848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 42395381 - 42395489
Alignment:
| Q |
33 |
tcactacaaaaagcaactttgtgagtggaaatgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttct |
132 |
Q |
| |
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||||||||||| |||||||| || ||||| ||||| || | || || |||||||| | |||||| |||||||||| ||||| || ||||||| |||| |
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| T |
42395381 |
tcactacaaaatgcaactttttgggtggagatgaaaagaacaccagcaataggaccagctgttgtgtataagtaacattgtgaagccttcaacactttct |
42395480 |
T |
|
| Q |
133 |
ctccatctt |
141 |
Q |
| |
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|||| |||| |
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|
| T |
42395481 |
ctccttctt |
42395489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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