View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14821_low_8 (Length: 407)
Name: NF14821_low_8
Description: NF14821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14821_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 23 - 397
Target Start/End: Complemental strand, 49929265 - 49928891
Alignment:
| Q |
23 |
cgctcctctcttctcgttgtgcagcatactagatgtctgcaaataccaaaatgcggaaggattcttgttaacaagacctctcatatgaggatagccttgg |
122 |
Q |
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| T |
49929265 |
cgctcctctcttctcattgtgcagcatactagatgtctgcaaataccaaaatgcggaaggattcttgttaataagacctctcatatgaggatagccttgg |
49929166 |
T |
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| Q |
123 |
tacaagtagtcagatggattgaaaacaggcgtttctttctcaaatctatgtgacttgcttctatgtagataactatctggattgtagagtggagattcat |
222 |
Q |
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| T |
49929165 |
tacaagtagtcagatggattgaaaacaggcgtttctttctcaaatctatgtgacttgcttctatgtagataactatctggattgtagagtggagattcat |
49929066 |
T |
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| Q |
223 |
tccttgacattgaatttactctcatacaattctcaaccaccttagcctcctcattaaatctctctctaatatccttaatatttctccaaaacttaaaaga |
322 |
Q |
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| T |
49929065 |
tccttgacattgaatttactctcatacaattctcaaccaccttagcctcctcattaaatctctctctaatatccttaatatttctccaaaacttaaaaga |
49928966 |
T |
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| Q |
323 |
tcttgattttgtgataatattccatgccttgaaacctgaaccacttgaattgacagaaacattgcctgatgatgt |
397 |
Q |
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| T |
49928965 |
tcttgattttgtgataatattccatgccttgaaacctgaaccacttgaattgacagaaacattgcctgatgatgt |
49928891 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 374
Target Start/End: Original strand, 13695379 - 13695553
Alignment:
| Q |
200 |
tggattgtagagtggagattcattccttgacattgaatttactctcatacaattctcaaccaccttagcctcctcattaaatctctctctaatatcctta |
299 |
Q |
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| T |
13695379 |
tggattataaagtggagattctctcttcgacactgaattttttcttagacaattctctatcaccttagcctcttcctttaatctttctctcatgtcctta |
13695478 |
T |
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| Q |
300 |
atatttctccaaaacttaaaagatcttgattttgtgataatattccatgccttgaaacctgaaccacttgaattg |
374 |
Q |
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|| ||||| | || ||| |||| ||||||| ||||||| ||||||| |||||||| ||||||| | |||||| |
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| T |
13695479 |
atgtttcttctaactttactagatattgatttgctgataatgttccatggcttgaaacttgaaccattagaattg |
13695553 |
T |
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