View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14822_high_2 (Length: 408)
Name: NF14822_high_2
Description: NF14822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14822_high_2 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 38638211 - 38637821
Alignment:
| Q |
1 |
acttgatcgatgtcaatttgtcaaaacaaatgacactagtaagtgcaattatatcaaattcatagattatggttttaaaaacattacctcctcgtgatgc |
100 |
Q |
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| T |
38638211 |
acttgatcgatgtcaatttgtcaaaacaaatgacactagtaattgcaattatatcaaattcatagattatggttttaaaaacattacctcctcgtgatgc |
38638112 |
T |
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| Q |
101 |
aattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagctt |
200 |
Q |
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| T |
38638111 |
aattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagctt |
38638012 |
T |
|
| Q |
201 |
ctagttctttcatatcatgtctacctttggtcctacattccatccattctcttctggctttcaaagattcatcacatagaatctagcacaaaatagaaaa |
300 |
Q |
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| T |
38638011 |
ctagttctttcatatcatgtctacctttggtcctacattccatccattctcttctggctttcaaagattcatcacatagaatctagcacaaaatagaaaa |
38637912 |
T |
|
| Q |
301 |
catatgtcacactcattgataacacctttaaatgaagtaaataagctggtacaaagtcaaagccaattataagttaccttgattttgtctt |
391 |
Q |
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| T |
38637911 |
catatgtcacactcattgataacacctttaaatgaagtaaataagctggtacaaagtcaaagccaattataagttaccttgattttgtctt |
38637821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 84 - 299
Target Start/End: Complemental strand, 38634082 - 38633867
Alignment:
| Q |
84 |
ttacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataa |
183 |
Q |
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| T |
38634082 |
ttacctcctcatgatgcaagtttttcaattttaaaatcctttgatatgcttcaccctttttcttatgattctctgttaattttgctttcaaagaatataa |
38633983 |
T |
|
| Q |
184 |
ttctctgtttatagcttctagttctttcatatcatgtctacctttggtcctacattccatccattctcttctggctttcaaagattcatcacatagaatc |
283 |
Q |
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| T |
38633982 |
ttctccatttatggcttctagttctttcacaccatgtcttactttggtcccacattctttccattctcttctgttttcaaaagattcatcaaatagaagc |
38633883 |
T |
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| Q |
284 |
tagcacaaaatagaaa |
299 |
Q |
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| T |
38633882 |
tagcagaaaatagaaa |
38633867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 38690730 - 38690649
Alignment:
| Q |
104 |
tttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataatt |
185 |
Q |
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| T |
38690730 |
tttttcaatttgaaaatcctttgatatgcttcatccttattcttatgcttctctatcaattttgcactcaaagaatataatt |
38690649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 331
Target Start/End: Complemental strand, 38589886 - 38589758
Alignment:
| Q |
202 |
tagttctttcatatcatgtctacctttggtcctacattccatccattctcttctggctttcaaagattcatcacatagaatctagcacaaaatagaaaac |
301 |
Q |
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||||||||||| | ||| ||| |||| |||| ||||||||||||||||| |||| || |||| ||| | ||| |||| |||||||||||||||||| |
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| T |
38589886 |
tagttctttcacaccatatcttactttagtcc-acattccatccattctcatctgttttcaaaaggttcgttacacagaagctagcacaaaatagaaaat |
38589788 |
T |
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| Q |
302 |
atatgtcacactcattgataacacctttaa |
331 |
Q |
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| T |
38589787 |
atctatcagactctttgataacacctttaa |
38589758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 45335472 - 45335686
Alignment:
| Q |
85 |
tacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataat |
184 |
Q |
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||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||| |||||| |||| |||||||||||| |||||| | |
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| T |
45335472 |
tacctcctcatgatgcaaatttttcgattttaaaattctttgatatgcttcaccctttttcttatgattctctttcaacttttctctcaaataatatagt |
45335571 |
T |
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| Q |
185 |
tctctgtttatagcttctagttctttcatatcatgtctacctttggtcctacattccatccattctcttctggctttcaaagattcatcacatagaatct |
284 |
Q |
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|||| ||||| ||| ||||||||||| | |||||| ||||||| | | |||||||||||||||||||| || |||||||||||||| | || || |
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| T |
45335572 |
tctc-atttatgtcttttagttctttcacactatgtcttactttggtgccaaattccatccattctcttctgttttcaaaagattcatcacaaaaaagct |
45335670 |
T |
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| Q |
285 |
agcacaaaatagaaaa |
300 |
Q |
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|||| ||||||||||| |
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| T |
45335671 |
agcagaaaatagaaaa |
45335686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 13167 - 13070
Alignment:
| Q |
106 |
tttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttcta |
203 |
Q |
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| T |
13167 |
tttcaatttcaaaatcctttgctttgcttcatactttttgttatacttctgattcaatttttctctcaatgaatataattttccgtttatggcttcta |
13070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 27512283 - 27512313
Alignment:
| Q |
354 |
aagtcaaagccaattataagttaccttgatt |
384 |
Q |
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| T |
27512283 |
aagtcaaagccaattataagttaccttgatt |
27512313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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