View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14822_high_8 (Length: 246)

Name: NF14822_high_8
Description: NF14822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14822_high_8
NF14822_high_8
[»] chr3 (2 HSPs)
chr3 (107-245)||(45985890-45986027)
chr3 (20-108)||(42580547-42580635)
[»] chr8 (3 HSPs)
chr8 (17-108)||(44495212-44495303)
chr8 (20-108)||(41434876-41434963)
chr8 (20-103)||(42934833-42934915)
[»] chr4 (1 HSPs)
chr4 (17-108)||(15707065-15707156)
[»] chr2 (2 HSPs)
chr2 (17-108)||(3377122-3377213)
chr2 (75-110)||(3081201-3081236)
[»] scaffold0642 (1 HSPs)
scaffold0642 (17-108)||(3810-3901)
[»] scaffold0345 (1 HSPs)
scaffold0345 (17-108)||(13722-13813)
[»] scaffold0105 (1 HSPs)
scaffold0105 (17-108)||(25168-25259)
[»] scaffold0076 (1 HSPs)
scaffold0076 (17-108)||(1838-1929)
[»] chr7 (2 HSPs)
chr7 (18-108)||(16000051-16000141)
chr7 (17-108)||(14586235-14586326)
[»] chr6 (1 HSPs)
chr6 (75-108)||(27765318-27765351)
[»] chr5 (1 HSPs)
chr5 (33-109)||(43469605-43469681)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 45985890 - 45986027
Alignment:
Q  107 atttatataccaaacaattagaattagacacacaaatacactcacatgtggtacttactacaaaattaagtttcacttcacttataaatttatgtttgtg 206  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45985890 atttatctaccaaacaattagaattagacacacaaatacactcacatgtggtacttactacaaa-ttaagtttcacttcacttataaatttatgtttgtg 45985988  T
Q  207 gctaattttaattggttgttgggttaaatatccacaatt 245  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45985989 gctaattttaattggttgttgggttaaatatccacaatt 45986027  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 42580635 - 42580547
Alignment:
Q  20 tagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||| ||||  ||||||||||||||||| |  ||||||||| |||||| |||||||||||||  ||| || ||| ||||||||    
T  42580635 tagcaattaatatgggattaggagggaaattagggagagattagggcaaaggtgccagctcatcaagttgagcgtttataataaaggat 42580547  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 44495303 - 44495212
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44495303 acatagcaattaagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 44495212  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 41434963 - 41434876
Alignment:
Q  20 tagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||| ||||  ||||||||||||||||| || |||||||| |||| ||||||||||||||||||||| |||||||||||||||    
T  41434963 tagcaattaatatgggattaggagggaaattagggaaagattagggttaag-tgacagctcatcaagtctagcgttaatagtaaaggat 41434876  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 42934833 - 42934915
Alignment:
Q  20 tagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaa 103  Q
    |||||||||| ||||  ||| ||||||||||||| |  |||||||| |||| ||||||||||||||||||||| ||||||||||    
T  42934833 tagcaattaatatgggattaagagggaaattagggagagattagggttaag-tgacagctcatcaagtctagcgttaatagtaa 42934915  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 15707156 - 15707065
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||||| |||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707156 acatagcaattaagatgggtttaggagggaaattagagagtgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 15707065  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 3377213 - 3377122
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3377213 acatagcaattaagatgggtttaggagggaaattagggagtgattagggctaaggtgacagttcatcaagtctagctttaatagtaaaggat 3377122  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 3081236 - 3081201
Alignment:
Q  75 cagctcatcaagtctagctttaatagtaaaggattt 110  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3081236 cagctcatcaagtctggctttaatagtaaaggattt 3081201  T

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Target: scaffold0642 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 3901 - 3810
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3901 acatagcaattaagataggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagttttaatagtaaaggat 3810  T

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Target: scaffold0345 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 13813 - 13722
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13813 acatagcaattaagataggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagttttaatagtaaaggat 13722  T

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Target: scaffold0105 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 25168 - 25259
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25168 acatagcaattaagataggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagttttaatagtaaaggat 25259  T

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Target: scaffold0076 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 1838 - 1929
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1838 acatagcaattaagatgggtttaggagggaaattagggagtgattagggctaaggtgacaactcatcaagtctagcgttaatagtaaaggat 1929  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 16000141 - 16000051
Alignment:
Q  18 catagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    ||||| |||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16000141 catagaaatttagatgggtttaggagggaaattagggagtgattagggctaaggtgacagctcatcaagtctagcattaatagtaaaggat 16000051  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 14586326 - 14586235
Alignment:
Q  17 acatagcaattaagatggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggat 108  Q
    |||||| ||||||||||  |||||||||||||||||| | ||| ||||||||||||||||   ||||||||||||| |||||||||||||||    
T  14586326 acatagaaattaagatgagtttaggagggaaattagggagtgactagggctaaggtgacaatgcatcaagtctagcgttaatagtaaaggat 14586235  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 27765351 - 27765318
Alignment:
Q  75 cagctcatcaagtctagctttaatagtaaaggat 108  Q
    ||||||||||||||||||||||||| ||||||||    
T  27765351 cagctcatcaagtctagctttaataataaaggat 27765318  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 43469605 - 43469681
Alignment:
Q  33 ggatttaggagggaaattaggaaatgattagggctaaggtgacagctcatcaagtctagctttaatagtaaaggatt 109  Q
    |||||| ||||||||| || ||| |||||||||| |   || ||||||||||||||| ||||| ||| |||||||||    
T  43469605 ggatttgggagggaaaataagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 43469681  T

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