View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14822_low_1 (Length: 492)

Name: NF14822_low_1
Description: NF14822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14822_low_1
NF14822_low_1
[»] chr3 (6 HSPs)
chr3 (128-437)||(33590413-33590731)
chr3 (128-437)||(33597585-33597903)
chr3 (39-123)||(27221778-27221861)
chr3 (425-475)||(33590740-33590790)
chr3 (425-475)||(33597912-33597962)
chr3 (381-437)||(15259933-15259989)
[»] chr1 (2 HSPs)
chr1 (1-125)||(16003854-16003978)
chr1 (1-127)||(26795237-26795362)
[»] chr8 (2 HSPs)
chr8 (1-126)||(40722198-40722326)
chr8 (373-462)||(14330681-14330767)
[»] chr5 (3 HSPs)
chr5 (333-462)||(19589497-19589617)
chr5 (333-462)||(21803855-21803975)
chr5 (373-462)||(21724152-21724238)
[»] chr7 (2 HSPs)
chr7 (316-437)||(13937414-13937528)
chr7 (316-437)||(39286445-39286559)
[»] chr2 (1 HSPs)
chr2 (316-437)||(31140145-31140259)
[»] scaffold0094 (1 HSPs)
scaffold0094 (313-362)||(6606-6655)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 437
Target Start/End: Original strand, 33590413 - 33590731
Alignment:
Q  128 atatgaatgcctttctatgataaaaaatttggtctgatttgttttccaataagaggacacgtggcattggcattgttagggcattttaggttgccacgtg 227  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33590413 atatgaatgcctttctatgataaaaa-tttgatctgatttgttttccaataacaggacacgtggcattggcattgttagggcattttaggttgccacgtg 33590511  T
Q  228 gattagccattggttatgttca----------tagtggatggatagtggatttccctaaaatcaatttcctatcccgctatcccaaaaccgtgtcttgct 317  Q
    ||||||||||||||||||||||          |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33590512 gattagccattggttatgttcaaatgtatgtatagtggatggatagtgtatttccctaaaatcaatttcctatcccgctattccaaaaccgtgtcttgct 33590611  T
Q  318 ctcataaccggtctcactctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagattta 417  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33590612 ctcataaccggtctcactctttcataatcttaaaatcaattttactgttaattttaatttctcaagcacttcaatcaatatcttccaaaaactagattta 33590711  T
Q  418 cgatttttcaagctcttcaa 437  Q
     ||||| |||||||||||||    
T  33590712 agatttctcaagctcttcaa 33590731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 437
Target Start/End: Original strand, 33597585 - 33597903
Alignment:
Q  128 atatgaatgcctttctatgataaaaaatttggtctgatttgttttccaataagaggacacgtggcattggcattgttagggcattttaggttgccacgtg 227  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33597585 atatgaatgcctttctatgataaaaa-tttgatctgatttgttttccaataacaggacacgtggcattggcattgttagggcattttaggttgccacgtg 33597683  T
Q  228 gattagccattggttatgttca----------tagtggatggatagtggatttccctaaaatcaatttcctatcccgctatcccaaaaccgtgtcttgct 317  Q
    ||||||||||||||||||||||          |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33597684 gattagccattggttatgttcaaatgtatgtatagtggatggatagtgtatttccctaaaatcaatttcctatcccgctattccaaaaccgtgtcttgct 33597783  T
Q  318 ctcataaccggtctcactctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagattta 417  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33597784 ctcataaccggtctcactctttcataatcttaaaatcaattttactgttaattttaatttctcaagcacttcaatcaatatcttccaaaaactagattta 33597883  T
Q  418 cgatttttcaagctcttcaa 437  Q
     ||||| |||||||||||||    
T  33597884 agatttctcaagctcttcaa 33597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 27221861 - 27221778
Alignment:
Q  39 tgttgacttatgcagttttctccacataggatacacacgtcattcgtggaattcttagaaactactttcgtaggaataagcattt 123  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  27221861 tgttgacttatacagttttatccacgtaggatacacacgtcattcgtggaattcttagaaacta-tttcgtaggaatgagcattt 27221778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 33590740 - 33590790
Alignment:
Q  425 tcaagctcttcaaggtatgcttatcttcccttcagattccaggacactcag 475  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  33590740 tcaagctcttcaaggtatgcttatcttcccttcagattcgaggaaactcag 33590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 33597912 - 33597962
Alignment:
Q  425 tcaagctcttcaaggtatgcttatcttcccttcagattccaggacactcag 475  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  33597912 tcaagctcttcaaggtatgcttatcttcccttcagattcgaggaaactcag 33597962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 15259989 - 15259933
Alignment:
Q  381 aagcacttcaatcaatttcttccaaaaactagatttacgatttttcaagctcttcaa 437  Q
    |||| |||||||||||||||||||||||| |  |||| ||||| |||||||||||||    
T  15259989 aagctcttcaatcaatttcttccaaaaaccaattttaagatttctcaagctcttcaa 15259933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 16003854 - 16003978
Alignment:
Q  1 gtttggtaaccgtgtgtcataaatgagagagatggtattgttgacttatgcagttttctccacataggatacacacgtcattcgtggaattcttagaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16003854 gtttggtaaccgtgtgtcataaatgagagagatggtattgttgacttatgtaattttctccacataggatacacacgtcattcgtggaattcttagaaac 16003953  T
Q  101 tactttcgtaggaataagcatttct 125  Q
    |||||||||||||||||||||||||    
T  16003954 tactttcgtaggaataagcatttct 16003978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 26795237 - 26795362
Alignment:
Q  1 gtttggtaaccgtgtgtcataaatgagagagatggtattgttgacttatgcagttttctccacataggatacacacgtcattcgtggaattcttagaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  26795237 gtttggtaaccgtgtgtcataaatgagagagatggtattgttgacttatgaaattttctccacataggatacacacgtcattcgtggaattcttagaaac 26795336  T
Q  101 tactttcgtaggaataagcatttctct 127  Q
    || ||||||||||||||||||||||||    
T  26795337 ta-tttcgtaggaataagcatttctct 26795362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 40722198 - 40722326
Alignment:
Q  1 gtttggtaaccgtgtgtcataaatgagagagatggt---attgttgacttatgcagttttctccacataggatacacacgtcattcgtggaattcttaga 97  Q
    ||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40722198 gtttggtaaccgtgtgtcataaacgagagagatggtggtattgttgacttatgcagttttctccacataggatacacacgtcatttgtggaattcttaga 40722297  T
Q  98 aactactttcgtaggaataagcatttctc 126  Q
    |||||||||||||||||||| ||||||||    
T  40722298 aactactttcgtaggaataaacatttctc 40722326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 462
Target Start/End: Original strand, 14330681 - 14330767
Alignment:
Q  373 aatttctcaagcacttcaatcaatttcttccaaaaactagatttacgatttttcaagctcttcaaggtatgcttatcttcccttcagatt 462  Q
    |||||||||| | |||||||||||| ||||||||||||   | ||| |||| ||||||||||||||||  |||| || || |||||||||    
T  14330681 aatttctcaaactcttcaatcaattccttccaaaaact---tgtaccatttctcaagctcttcaaggttagcttctcctctcttcagatt 14330767  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 462
Target Start/End: Complemental strand, 19589617 - 19589497
Alignment:
Q  333 actctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagatttacgatttttcaagctc 432  Q
    |||||| ||||||| ||||||||||||||| || |||||      ||||| | ||||||||||||||||||||||| |   | ||| |||| ||||||||    
T  19589617 actcttccataaccctaaaatcaatttcacaatcaattt------ctcaaactcttcaatcaatttcttccaaaaatt---tgtaccatttctcaagctc 19589527  T
Q  433 ttcaaggtatgcttatcttcccttcagatt 462  Q
    ||||||||  |||| ||||| |||||||||    
T  19589526 ttcaaggttagcttctcttctcttcagatt 19589497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 462
Target Start/End: Original strand, 21803855 - 21803975
Alignment:
Q  333 actctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagatttacgatttttcaagctc 432  Q
    |||||| ||||||| ||||||||||||||| || |||||      ||||| | |||||||||||| ||||||||||||   | ||| |||| ||||||||    
T  21803855 actcttccataaccctaaaatcaatttcacaatcaattt------ctcaaactcttcaatcaattccttccaaaaact---tgtaccatttctcaagctc 21803945  T
Q  433 ttcaaggtatgcttatcttcccttcagatt 462  Q
    ||||||||  |||| ||||| |||||||||    
T  21803946 ttcaaggttagcttctcttctcttcagatt 21803975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 462
Target Start/End: Original strand, 21724152 - 21724238
Alignment:
Q  373 aatttctcaagcacttcaatcaatttcttccaaaaactagatttacgatttttcaagctcttcaaggtatgcttatcttcccttcagatt 462  Q
    |||||||||| | |||||||||||| ||||||||||||   | ||| |||| ||||||||||||||||  |||| ||||| |||||||||    
T  21724152 aatttctcaaactcttcaatcaattccttccaaaaact---tgtaccatttctcaagctcttcaaggttagcttctcttctcttcagatt 21724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 13937414 - 13937528
Alignment:
Q  316 ctctcataaccggtctcactctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagatt 415  Q
    |||||||||||  |||||||||||| ||||| ||||||||||||||| || |||||         |||| |||||||||||||||||||||||| |  ||    
T  13937414 ctctcataaccaatctcactctttc-taaccctaaaatcaatttcacaatcaatttagg------aagctcttcaatcaatttcttccaaaaaccaattt 13937506  T
Q  416 tacgatttttcaagctcttcaa 437  Q
    || ||||| |||||||||||||    
T  13937507 taagatttctcaagctcttcaa 13937528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 39286445 - 39286559
Alignment:
Q  316 ctctcataaccggtctcactctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagatt 415  Q
    |||||||||||  |||||||||||| ||||| ||||||||||||||    ||||   |||||   |||| |||||||||||||||||||||||| |  ||    
T  39286445 ctctcataaccaatctcactctttc-taaccctaaaatcaatttca----taatc--aatttaggaagctcttcaatcaatttcttccaaaaaccaattt 39286537  T
Q  416 tacgatttttcaagctcttcaa 437  Q
    || ||||| |||||||||||||    
T  39286538 taagatttctcaagctcttcaa 39286559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 31140145 - 31140259
Alignment:
Q  316 ctctcataaccggtctcactctttcataaccataaaatcaatttcactattaattttaatttctcaagcacttcaatcaatttcttccaaaaactagatt 415  Q
    |||||||||||  |||||||||||| ||||| ||||||||||||||| || |||||         |||| |||||||||||||||||||||||| |  ||    
T  31140145 ctctcataaccaatctcactctttc-taaccctaaaatcaatttcacaatcaatttagg------aagctcttcaatcaatttcttccaaaaaccaattt 31140237  T
Q  416 tacgatttttcaagctcttcaa 437  Q
    || ||||| |||||||||||||    
T  31140238 taagatttctcaagctcttcaa 31140259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 6606 - 6655
Alignment:
Q  313 ttgctctcataaccggtctcactctttcataaccataaaatcaatttcac 362  Q
    ||||||||| ||||  |||| ||||||||||||| |||||||||||||||    
T  6606 ttgctctcaaaaccactctccctctttcataaccctaaaatcaatttcac 6655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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