View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14822_low_14 (Length: 202)
Name: NF14822_low_14
Description: NF14822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14822_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 4390959 - 4390789
Alignment:
| Q |
14 |
caaagggctaagggagaccttaaacagcttcgaccctagtctcttgacataacacaactacaacaaaaagttcaagtctcttaggatcctgaacatttag |
113 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4390959 |
caaagggttaagggagaccttaaacaacttcgaccctagtctcttgacataacagaactacaacaaaaagttcaagtctcttaggatcctgaacatttag |
4390860 |
T |
|
| Q |
114 |
cccattgctactcccgaacttcccaacaaaaagatcctcaaatctatgagtttcatttgaccaattaacct |
184 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4390859 |
cccattgctgctaccgaacttcccaacaaaaagatcctcaaatctatgagtttcatttgaccaattaacct |
4390789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 38709353 - 38709316
Alignment:
| Q |
34 |
taaacagcttcgaccctagtctcttgacataacacaac |
71 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
38709353 |
taaacagcctcgaccctagtcccttgacataacacaac |
38709316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 26501011 - 26501058
Alignment:
| Q |
24 |
agggagaccttaaacagcttcgaccctagtctcttgacataacacaac |
71 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
26501011 |
agggagaccttaaacaacttcgaccctagtcctttgacagaacacaac |
26501058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 29685261 - 29685205
Alignment:
| Q |
14 |
caaagggctaagggagaccttaaacagcttcgaccctagtctcttgacataacacaac |
71 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29685261 |
caaatggctaagggagatct-aaacagcttcgaccctagttccttgacagaacacaac |
29685205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 29685120 - 29685069
Alignment:
| Q |
19 |
ggctaagggagaccttaaacagcttcgaccctagtctcttgacataacacaac |
71 |
Q |
| |
|
|||||||||||| || ||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
29685120 |
ggctaagggagaact-aaacagccttgaccctagtcccttgacataacacaac |
29685069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University