View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14822_low_5 (Length: 379)
Name: NF14822_low_5
Description: NF14822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14822_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 146 - 362
Target Start/End: Complemental strand, 51195199 - 51194983
Alignment:
| Q |
146 |
gatgttcagatacattaaatatttcatacttcattcattttttattcttaaccataggcttattcgtatcttgtgtttgtgagtctgaatcaaagtcctg |
245 |
Q |
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| T |
51195199 |
gatgttcagatacattaaatatttcatacttcattcattttttattcttaaccacaggcttattagtatcttgtgtttgtgagtctgaatcaaagtcctg |
51195100 |
T |
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| Q |
246 |
nnnnnnnttattttcttgtatcagcctgttaatgacatgtggattgattcgcctgtgtttgtcaaaagccaagtcaaaatttggttctttcaattgcaat |
345 |
Q |
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| T |
51195099 |
aaaaaaattattttcttgtattagcctgttaatgacatgtggattgattcgcctgtgtttgtcaaaagccaagtcaaaatttggttctttcaattgcaat |
51195000 |
T |
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| Q |
346 |
tacaatatctatcaaat |
362 |
Q |
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| T |
51194999 |
tacaatatctatcaaat |
51194983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51195344 - 51195305
Alignment:
| Q |
1 |
gattaaaataaatggagttatatagtatatatttggagtg |
40 |
Q |
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| T |
51195344 |
gattaaaataaatggagttatatagtatatatttggagtg |
51195305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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