View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14822_low_8 (Length: 370)
Name: NF14822_low_8
Description: NF14822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14822_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 8767478 - 8767807
Alignment:
| Q |
18 |
ctcttgtcttgttttgtgatctactaaagaactcatgaaaaccactctatttaattaatcnnnnnnnncttcttttcttgaaaactctaagaagtgagat |
117 |
Q |
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| T |
8767478 |
ctcttgtcttgttttgtgatctactaaagaactcatgaaaaccactctatctaattagtcttttttttcttcttttcttgaaaactctaagaagtgagat |
8767577 |
T |
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| Q |
118 |
gagaggtaattgtgttacaacaaa-gtaaaggcaatattgggggtgtatatctgagttgaatgtatcatttattttctatgtattaatcatannnnnnnn |
216 |
Q |
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| T |
8767578 |
gagaggtaattgtgttacaacaaaagtaaaggcaatattgggggtgtatatctgagttgaatgtatcatttgttttctatgtattaatcatattttttgc |
8767677 |
T |
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| Q |
217 |
nnnnnnaatattgattttgcctttaattaaatggaaaaagtaagtatgttgaaaattttcattcttcacatttaccaagtaggccggtttttaacattgt |
316 |
Q |
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| T |
8767678 |
ttttttaatattgattttgcctttaattaaatggaaaaagtaagtatgttgaaaattttcattcttcacatttaccaagtaggccggttttcaacattgt |
8767777 |
T |
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| Q |
317 |
tccttctatggaagatttcaatatctttca |
346 |
Q |
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| T |
8767778 |
tccttctatggaagatttcaatatctttca |
8767807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 8769147 - 8769187
Alignment:
| Q |
308 |
taacattgttccttctatggaagatttcaatatctttcatt |
348 |
Q |
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| T |
8769147 |
taacaatgttccttctatggaagatttgagtatctttcatt |
8769187 |
T |
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