View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_high_2 (Length: 503)
Name: NF14823_high_2
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 3 - 500
Target Start/End: Original strand, 5113345 - 5113841
Alignment:
| Q |
3 |
gtgcaatgcatagttttccattggtttataacatattttgtgcagactttgattgcagatgatgaaccagcgaagtaccagagacagtttagcaaacaca |
102 |
Q |
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| T |
5113345 |
gtgcaatgcatagttttccattggtttataacatattttgtgcagactttgattgcagatgatgaaccagccaagtaccagagacaatttagcaaacgca |
5113444 |
T |
|
| Q |
103 |
--aagaaaggaatctaggctgatgaatttgagaagctgtacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcc |
200 |
Q |
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| T |
5113445 |
taaagaaaggaatcgaggctgatgaatttgagaagctgtataagaaggttaatgatgccattcgtgtagatccttctataaagaaatcacagaagcatcc |
5113544 |
T |
|
| Q |
201 |
tcctaaacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatg |
300 |
Q |
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| T |
5113545 |
tcctaaacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatg |
5113644 |
T |
|
| Q |
301 |
acgatgaggatgacgacgagctagaacagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggacaactctttggaatgcttataag |
400 |
Q |
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| T |
5113645 |
acgatgaggatgacgacgagctagaagagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggacaactctttggaatgcttat--- |
5113741 |
T |
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| Q |
401 |
aagaacatgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgattaacttataaccttgtattcatatcactc |
500 |
Q |
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| T |
5113742 |
aagaacatgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgcgattaacttataaccttgtattcttttcactc |
5113841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 10463713 - 10463668
Alignment:
| Q |
219 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
264 |
Q |
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| T |
10463713 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
10463668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 10463929 - 10463810
Alignment:
| Q |
103 |
aagaaaggaatctaggctgatgaatttgagaagctgtacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcctc |
202 |
Q |
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| T |
10463929 |
aagaaaggaatcgaggcagatggccttgaggagctttacaagaaggttcatgctgcaattcgtgcagatcctacaatcaagaaatccgagaagcagcctc |
10463830 |
T |
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| Q |
203 |
ctaaacaacacaagatgtat |
222 |
Q |
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| T |
10463829 |
caaaacaacacaagaggtat |
10463810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 38650711 - 38650772
Alignment:
| Q |
411 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
472 |
Q |
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| T |
38650711 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacaaagaattattgaacatgtgatt |
38650772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 38625665 - 38625726
Alignment:
| Q |
411 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
472 |
Q |
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|||| ||||||| |||||||| ||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
38625665 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacagagaattattgaacatgtgatt |
38625726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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