View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_high_3 (Length: 419)
Name: NF14823_high_3
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 5 - 406
Target Start/End: Complemental strand, 29570935 - 29570533
Alignment:
| Q |
5 |
acagagaaaacagagtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctct |
104 |
Q |
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| T |
29570935 |
acagagaaaacagagtaaatggatatagaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctct |
29570836 |
T |
|
| Q |
105 |
ttttaggtctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29570835 |
ttttaggtctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgcatgaattcatatcaatttttagaccaaggtc |
29570736 |
T |
|
| Q |
205 |
aaagtattgaaaactttatactaaccacttcaattaaaaatgcaaac-nnnnnnnnnactttaccatttcaccaaaataatgaagttaaagaaacatata |
303 |
Q |
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| T |
29570735 |
aaagtattgaaaactttatactaaccacttcaattaaaaatgcaaacttttttttttactttaccatttcaccaaaataatgaagttaaagaaacatata |
29570636 |
T |
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| Q |
304 |
caagctcaaatatttcatacttgctcataatcaaaatgcataattaaaaatatttcacatcttaaatgcttgatttcattgtctttgaaaaatggaaaga |
403 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29570635 |
caagctcaaacatttcatacttgctcataatcaaaatgcataattaaaactatttcacatcttaaatgcttgatttcattgtctttgaaaaatggaaaga |
29570536 |
T |
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| Q |
404 |
aat |
406 |
Q |
| |
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||| |
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| T |
29570535 |
aat |
29570533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 44674082 - 44674026
Alignment:
| Q |
118 |
cttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctgca |
174 |
Q |
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| T |
44674082 |
cttaggtaatttatccatctcaatctgcaactcttgccacatcttagcaagcctgca |
44674026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 33378814 - 33378670
Alignment:
| Q |
32 |
gaaagaacctattgccaagttgagcatggagatcaatgaccattttctcctcatattctgataaaagtcctctttttaggtctggccttaggtaatttgt |
131 |
Q |
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|||| ||||| || |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||| | ||||||||| |
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| T |
33378814 |
gaaataacctgttcccaagttgagcatgaagatcaatcaccattttctcttcatattcagataaaagtcctctttttaaatctggcctcaagtaatttgt |
33378715 |
T |
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| Q |
132 |
ccatctcaatctgcaactttttccacaccttaacaaccctgcatg |
176 |
Q |
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| T |
33378714 |
ccatctaagtctacaactttttccacaccttaatagccctgcatg |
33378670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 3616471 - 3616412
Alignment:
| Q |
113 |
ctggccttaggtaatttgtccatctcaatctgcaactttttccacaccttaacaaccctg |
172 |
Q |
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|||||||||| |||||||||||||| | ||||||||| || | |||||||||||| |||| |
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| T |
3616471 |
ctggccttagataatttgtccatctaagtctgcaactcttactacaccttaacaaacctg |
3616412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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