View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_low_10 (Length: 257)
Name: NF14823_low_10
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 4686374 - 4686592
Alignment:
| Q |
22 |
atgttgtcatacacaaaccaacaaggcttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagattttcaggtgattatcatccta |
121 |
Q |
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| T |
4686374 |
atgttgtcatacacaaaccaacaaggcttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagattttcaggtgattatcatccta |
4686473 |
T |
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| Q |
122 |
atactacttttgatgctttgaatcttcaattttcaaatgctacttcttcaactcatgaacaagtttatgatcaagaacatcatgtgggatcttctacttg |
221 |
Q |
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| T |
4686474 |
atactacttttgatgctttgaatcttcaattttcaaatgctacttcttcaactcatgaacaagtttatgatcaagaacatcatgtgggatcttctacttg |
4686573 |
T |
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| Q |
222 |
tgttaattcttccaatgat |
240 |
Q |
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| T |
4686574 |
tgttaattcttccaatgat |
4686592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 47846366 - 47846314
Alignment:
| Q |
49 |
ttcaatgatcaagattctattagaaaacttcttatgaagcttggaggaagatt |
101 |
Q |
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| T |
47846366 |
ttcaacgatcaagattctattagaaaatttctaatcaagcttggtgggagatt |
47846314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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