View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_low_13 (Length: 217)
Name: NF14823_low_13
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_low_13 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 949708 - 949520
Alignment:
| Q |
16 |
cacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
949708 |
cacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcaca |
949609 |
T |
|
| Q |
116 |
gagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
949608 |
gagtaaacttcggttgaatcagttttatgacagtaaaaaactgtgtaagggtaattctctttgtgacacacaatagttttgttcttctc |
949520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 942713 - 942531
Alignment:
| Q |
22 |
aaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaa |
121 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
942713 |
aaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaa |
942614 |
T |
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| Q |
122 |
acttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
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| T |
942613 |
acttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctc |
942531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 960674 - 960492
Alignment:
| Q |
22 |
aaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaa |
121 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
960674 |
aaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaa |
960575 |
T |
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| Q |
122 |
acttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
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| T |
960574 |
acttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctc |
960492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 971983 - 971801
Alignment:
| Q |
22 |
aaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacagagtaa |
121 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
971983 |
aaaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaa |
971884 |
T |
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| Q |
122 |
acttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
971883 |
acttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctc |
971801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 936799 - 936629
Alignment:
| Q |
16 |
cacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcaca |
115 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||| ||| || |||||| | |||||||||||||||| || |||||| |
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| T |
936799 |
cacttgaaaagccaaatgtttaggattccattgtgaagtatcagtgtgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcaca |
936700 |
T |
|
| Q |
116 |
gagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacac |
186 |
Q |
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| T |
936699 |
gagtaaactttagttgaatcagttttatgacagtaaaaaactgcataagggtaactctctttgtgacacac |
936629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 419560 - 419747
Alignment:
| Q |
17 |
acttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacag |
116 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||| || |||||||| |||| || || ||||||| |
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| T |
419560 |
acttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacag |
419659 |
T |
|
| Q |
117 |
agtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
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||||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
419660 |
agtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctc |
419747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 975601 - 975414
Alignment:
| Q |
17 |
acttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacag |
116 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||| || |||||||| |||| || || ||||||| |
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| T |
975601 |
acttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacag |
975502 |
T |
|
| Q |
117 |
agtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
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||||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
975501 |
agtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctc |
975414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 910043 - 909871
Alignment:
| Q |
16 |
cacttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcaca |
115 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||| ||||||| ||| |||| | ||| || |||||| | |||||||| ||||||| || |||||| |
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| T |
910043 |
cacttgaaaagccaaatgtttaaggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcaca |
909944 |
T |
|
| Q |
116 |
gagtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaa |
188 |
Q |
| |
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|||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
909943 |
gagtaaactttagttgcatctgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaa |
909871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 924575 - 924461
Alignment:
| Q |
17 |
acttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacag |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| ||||||| ||| |||| | ||| || |||||| || |||||||||||||||| | |||| | |
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| T |
924575 |
acttgaaaagccaaatgtttaggactccattgtgaagtatcagagtggcaaatagcaacagctttaactttggttccatcaacaccttccataggcaaat |
924476 |
T |
|
| Q |
117 |
agtaaacttcagttg |
131 |
Q |
| |
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||||||||| ||||| |
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| T |
924475 |
agtaaactttagttg |
924461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 11011 - 10824
Alignment:
| Q |
17 |
acttgaaaagccaaatgtttagggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttctaagggcacag |
116 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||||| || |||||||| |||| || || ||||||| |
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| T |
11011 |
acttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacag |
10912 |
T |
|
| Q |
117 |
agtaaacttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagtattgttcttctc |
204 |
Q |
| |
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||||| ||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
10911 |
agtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgttcttctc |
10824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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