View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_low_16 (Length: 201)
Name: NF14823_low_16
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 34085519 - 34085339
Alignment:
| Q |
17 |
atcatcatctatacctctcacgtatacccttattcctctcataaccaaaaccata--------------attatgtctttcaatttcaataagagaagcc |
102 |
Q |
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| T |
34085519 |
atcatcatctatacctctcacgtatacccttattcctctcataaccaaaaccatagtcatagtcctttaattatgtctttcaatttcaataagagaagcc |
34085420 |
T |
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| Q |
103 |
tcgtcaaaacccttttctcctctaacaaaacctgtggttgcatcaaaataaaaccctctaacgtacttgaaccctctcaaa |
183 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085419 |
tcgtcaaaacccttttctcctctaacaaaagctgtggttgcatcaaaataaaaccctctaacgtacttgaaccctctcaaa |
34085339 |
T |
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