View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14823_low_5 (Length: 348)
Name: NF14823_low_5
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 2582152 - 2581837
Alignment:
| Q |
18 |
acaacagtgtaaatggatccttaggtgttcataaaaaagtggaagttgtaacaaaaatggatccctaataatgaacaggtctggttctaagatgtttacg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582152 |
acaacagtgtaaatggatccttaggtgttcataaaaaagtggaagttgtaacaaaaatggatccctaataatgaacaggtctggttctaagatgtttacg |
2582053 |
T |
|
| Q |
118 |
tgcatattaacacaaagcacatcatctcacatttgtgtaatgtgacaaattcaaagtatagttcatg-nnnnnnnntggaagttgtaacaaaaatgacga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2582052 |
tgcatattaacacaaagcacatcatctcacatttgtgtaatgtgacaaattcaaagtatagttcatgaaaaaaaaatggaagttgtaacaaaaatgacga |
2581953 |
T |
|
| Q |
217 |
cgttataaaaatgttaaacgagattatgtatgcaagtgtgagtgagagcatttagtaacttgattcagtcataattgtcgaagttttctgactaaaataa |
316 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2581952 |
cgttataaaaatgttaaac--gattatgt-cgcaagtgtgagtgagagcatttagtaacttgattcagtcataattgtcgaagttttctgactaaaataa |
2581856 |
T |
|
| Q |
317 |
tcaataaacctttcacttg |
335 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2581855 |
tcaataaacctttcacttg |
2581837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 26006516 - 26006470
Alignment:
| Q |
269 |
tagtaacttgattcagtcataattgtcgaagttttctgactaaaataa |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
26006516 |
tagtaacttgattcagtcataattgtctaag-tttctgactgaaataa |
26006470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University