View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_low_6 (Length: 284)
Name: NF14823_low_6
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 38452557 - 38452426
Alignment:
| Q |
139 |
gtacctcttatctgttgagattagcaatgaagaattgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctg |
238 |
Q |
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| T |
38452557 |
gtacctcttatctgttgagattagcaatgaagaattgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctg |
38452458 |
T |
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| Q |
239 |
ctgaaatttgtgcatatcacatgtactctgtg |
270 |
Q |
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| T |
38452457 |
ctgaaatttgtgcatataaaatgtactctgtg |
38452426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 38452678 - 38452616
Alignment:
| Q |
18 |
ggtttctcaagtgcttagatacaagtcagaatgatgtgatattttgttgaaaatgtgtagagc |
80 |
Q |
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| T |
38452678 |
ggtttctcaagtgcttagatacaagtcagaatgatgtgatattttgttgaaaatgtgtagagc |
38452616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 39850687 - 39850760
Alignment:
| Q |
174 |
tgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctgctgaaattt |
247 |
Q |
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| T |
39850687 |
tgaagatggtaaattactaatcaggaagccagaaaattagtttgtgatgttagttaattaggctgctgcaattt |
39850760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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