View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14823_low_7 (Length: 282)
Name: NF14823_low_7
Description: NF14823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14823_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 2601190 - 2600923
Alignment:
| Q |
15 |
atgaaagcagcttatgtgctggagtggaaatgaagtatgagttctttctcataattttgattaggtagttattttataagttcaaatttaaaacactaaa |
114 |
Q |
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| T |
2601190 |
atgaaagtatcttatgtgctggagtggaaatgaaatatgagttctttctcataattttgattaagtagttattttataagttcaaatttcaaacactaaa |
2601091 |
T |
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| Q |
115 |
gaataagagcatcaaaaagcaatgctttttgcaacgattcattaaagaaaatatgattaatattatgttgaattaattacagtaaggatatcaaatttca |
214 |
Q |
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| T |
2601090 |
gaataagagcatcaaaaagcaatgctttttgcaacgattcattaaagaaaatatgattaatattatgttgaattaattacagtaaggatatcaaatttca |
2600991 |
T |
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| Q |
215 |
ataaagatgtttcaattcggaaatgtggattaatgacataagtgaagagtgcatgccaacctcacgta |
282 |
Q |
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| T |
2600990 |
ataaagatgtttcaattcggaaatgtggattaatgacataagtgaagagtgcatgccaatctcacgta |
2600923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 2612855 - 2612716
Alignment:
| Q |
13 |
aaatgaaagcagcttatgtgctggagtggaaatgaagtatgagttctttctcataattttgattaggtagttattttataagttcaaatttaaaacacta |
112 |
Q |
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| T |
2612855 |
aaatgaaagcatcttttatgctggagtggaaatgaattttgagttctttctcatatttataatcgggtagttattttataagtttaaatttgaaatacta |
2612756 |
T |
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| Q |
113 |
aagaataagagc---atcaaaaagcaatgctttttgcaac |
149 |
Q |
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| T |
2612755 |
aagaataaaagcaatatcagaaagcaatgttttttgcaac |
2612716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 2612701 - 2612645
Alignment:
| Q |
218 |
aagatgtttcaattcggaaatgtggattaatgacataagtgaagagtgcatgccaac |
274 |
Q |
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| T |
2612701 |
aagaagtttcaattcagaaatgtggattaatgacataagtgaggagtgcatgccaac |
2612645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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