View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14824_high_2 (Length: 312)

Name: NF14824_high_2
Description: NF14824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14824_high_2
NF14824_high_2
[»] chr2 (2 HSPs)
chr2 (174-300)||(43417088-43417214)
chr2 (1-111)||(43416917-43417025)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 174 - 300
Target Start/End: Original strand, 43417088 - 43417214
Alignment:
Q  174 gtatggggtctcagtgtcaatgtcatatgtttttacattaaaatgtcgatgtatatgtgtcagtatcatgctagtatccatgttagaacttagagtgcat 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43417088 gtatggggtctcagtgtcaatgtcatatgtttttacattaaaatgtcgatgtatatgtgtcagtatcatgctagtatccatgttagaacttagagtgcat 43417187  T
Q  274 gggtccatatctcccacaccaaatcct 300  Q
    |||||||||||||||||||||||||||    
T  43417188 gggtccatatctcccacaccaaatcct 43417214  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 43416917 - 43417025
Alignment:
Q  1 aagatgaaagactatcatatcttgttttagaannnnnnnnggtaatgaaacaaattgatcaatttagaggcatacatacatacatacatagagagagaca 100  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  43416917 aagatgaaagactatcatatcttgttttagaattttttttggtaatgaaacaaattgatcaatttagaggcatgcatacatacatacat--agagagaca 43417014  T
Q  101 cactgattctc 111  Q
    |||||||||||    
T  43417015 cactgattctc 43417025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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