View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14824_low_1 (Length: 622)
Name: NF14824_low_1
Description: NF14824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14824_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 33 - 606
Target Start/End: Original strand, 42311548 - 42312121
Alignment:
| Q |
33 |
catgtgatcacagacgcttagataagactaaatatgannnnnnnnnncaacaaagtaatgtttcatacatttgaaggcacgcaaaataaacaaaaatgaa |
132 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42311548 |
catgtgaacacagacgattagataagactaaatatgatttttttt--caacaaagtaatgtttcatacatttgaaggcacgcaaaataaacaaaaacgaa |
42311645 |
T |
|
| Q |
133 |
ctcagtatactgctcatcacatatatcatatttctgcatttatgaatagnnnnnnntaatgtgcagacctcaacctttctaattacatagtcaatcatcc |
232 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
42311646 |
ctcagtatactgctcatcacatatatcatgtttctgcatttatgaatagacaaaaataatgtgcagacctcaacctttataattacatagccaatcatcc |
42311745 |
T |
|
| Q |
233 |
ttcccacttcaatagaaagattaggcaatttgcatttagcatattaaaaaagtggggagaaagaatctagaagggcaagaaaacaatgaccaa--aaaga |
330 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42311746 |
ttgccacttcaatagaaagattaggcaatttgcatttagcatattaaaaaagtggggagaaagaatctagaagggcaagaaaacaatgaccaagaaaaga |
42311845 |
T |
|
| Q |
331 |
tagaaaatagctaaggatacacatgatttaaaggacttgcaaatgcacttgcatggaaatgctacggttagacagtcttttgacaaaattctataccatc |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42311846 |
tagaaaatagctaaggatacacatgatttaaaggacttgcaaatgcacttgcatggaaatgctacggttagacagtcttttgacaaaattctatgccatc |
42311945 |
T |
|
| Q |
431 |
catttgtgagtatggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgc |
530 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
42311946 |
catttgtgagcatggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcgaagaacacgacgtcataaccac |
42312045 |
T |
|
| Q |
531 |
tgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
606 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42312046 |
tattaagaagatgagggtgtacaaagtaactgtagggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
42312121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 33 - 606
Target Start/End: Complemental strand, 47247864 - 47247292
Alignment:
| Q |
33 |
catgtgatcacagacgcttagataagactaaatatgannnnnnnnnncaacaaagtaatgtttcatacatttgaaggcacgcaaaataaacaaaaatgaa |
132 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
47247864 |
catgtgatcacagacacttagataagactacatatgatttttttt--caacaaagttatgtttcatagatttgaaggcacacaaaataaacaaaaacgaa |
47247767 |
T |
|
| Q |
133 |
ctcagtatactgctcatcacatatatcatatttctgcatttatgaatagnnnnnnntaatgtgcagacctcaacctttctaattacatagtcaatcatcc |
232 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247766 |
ctcagtatattgctcatcacatatatcatgtttctgcatttataaataaacaaaaataatgtgcagacctcaacctttctaattacatagtcaatcatcc |
47247667 |
T |
|
| Q |
233 |
ttcccacttcaatagaaagattaggcaatttgcatttagcatattaaaaaagtggggagaaagaatctagaagggcaagaaaacaatgaccaa--aaaga |
330 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47247666 |
ttgccacttcaatagaaagattaggcaatttgcatttagcacattaaaaaagtggggagaaagaatctagaagggcaagaaaacaatgaccaagaaaaga |
47247567 |
T |
|
| Q |
331 |
tagaaaatagctaaggatacacatgatttaaaggacttgcaaatgcacttgcatggaaatgctacggttagacagtcttttgacaaaattctataccatc |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
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| T |
47247566 |
tagaaaatagctaaggatacacatgatttaaaggacttgcaaatgcacttgcatggaa-tgctacggttagccagtcttttgacaaaattctacgccatc |
47247468 |
T |
|
| Q |
431 |
catttgtgagtatggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgc |
530 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
47247467 |
catttgtgagcatggtggtggtgaaacttctcttagtgatttgtttgatttggattttagtggtggtagagatagtcggagaacacgacgtcatagccgc |
47247368 |
T |
|
| Q |
531 |
tgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
606 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47247367 |
tgttaaaaagatgagggtgtacgaagtaactgtcgggatgaaagagagacaaatgtgaaatgaggttcaatgtttt |
47247292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 325 - 606
Target Start/End: Original strand, 41325723 - 41326003
Alignment:
| Q |
325 |
aaaagatagaaaatagctaaggatacacatgatttaaaggacttgcaaatgcacttgcatggaaatgctacggttagacagtcttttgacaaaattctat |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |
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| T |
41325723 |
aaaagatagaaaatagctaaggatacacatgatttaaagtacttgcaaatgcacttgcatcgaa-tgctacggttagacagtctttcgacaaaattctat |
41325821 |
T |
|
| Q |
425 |
accatccatttgtgagtatggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcat |
524 |
Q |
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||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
41325822 |
gccatccatttgtgagcatggttgtggcgaagcttctcttagtgattggtttgatttggatttttgtggtggcagagatggtcggagaacacgacgtcat |
41325921 |
T |
|
| Q |
525 |
aaccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
606 |
Q |
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| T |
41325922 |
agccgctgttaagaagatgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
41326003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 9e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 442 - 606
Target Start/End: Original strand, 20908906 - 20909070
Alignment:
| Q |
442 |
atggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaaga |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
20908906 |
atggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaaga |
20909005 |
T |
|
| Q |
542 |
tgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20909006 |
tgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
20909070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 442 - 606
Target Start/End: Original strand, 20923354 - 20923518
Alignment:
| Q |
442 |
atggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaaga |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
20923354 |
atggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaaga |
20923453 |
T |
|
| Q |
542 |
tgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20923454 |
tgagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgtttt |
20923518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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