View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14825_high_1 (Length: 666)
Name: NF14825_high_1
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 433 - 650
Target Start/End: Complemental strand, 34770840 - 34770620
Alignment:
| Q |
433 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctgactat |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34770840 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctaactat |
34770741 |
T |
|
| Q |
533 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggaca---tcattga |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34770740 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcatcattga |
34770641 |
T |
|
| Q |
630 |
gccacaaaaccatcgtgtatg |
650 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
34770640 |
gccacaaaaccatcgcgtatg |
34770620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 433 - 650
Target Start/End: Complemental strand, 34781785 - 34781565
Alignment:
| Q |
433 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctgactat |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34781785 |
ctaataattgttaatacttatctatgaagttgcacatcaatccacgactttgaagatctcacaacacatgactgctcaaaattcttttcgatctaactat |
34781686 |
T |
|
| Q |
533 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggaca---tcattga |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34781685 |
aatacactcctagttggctttgatcaatttaattctaccctttgcatcacattaccaacaaagaaatcaatactatcttccattgggacatcatcattga |
34781586 |
T |
|
| Q |
630 |
gccacaaaaccatcgtgtatg |
650 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
34781585 |
gccacaaaaccatcgcgtatg |
34781565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 27 - 426
Target Start/End: Complemental strand, 34782254 - 34781852
Alignment:
| Q |
27 |
taaatgaggtggcatatgctacaaaaaatgacgcatatgagaagggagtgaaccgccgtttcatggatgacacaccctccaacacaagctgtattgacat |
126 |
Q |
| |
|
||||| ||||| |||||||||| ||||||| || || |||||||| ||||||| ||||| || || || |||||||||||||||||||||||||| ||| |
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| T |
34782254 |
taaataaggtgtcatatgctaccaaaaatgtcggatctgagaaggaagtgaactgccgtctcctgcctgccacaccctccaacacaagctgtattgtcat |
34782155 |
T |
|
| Q |
127 |
gatgaagtactccctgatacataagattatcctttatgggaagtctgctgcgaaggaatcgtcaaacgaacactgaaaccttcaacgaaactcacctcaa |
226 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34782154 |
gatgaagtactctctgacgcattagattatcctttatggaaagtcggttgcgaaggagtcgtcaaacgaacactgaaaccttcaacgaaacttgcctcaa |
34782055 |
T |
|
| Q |
227 |
ccacaccatatcagcnnnnnnnnnnnnnnnna---ctcttaaaacaattgaaaccatctttttacaaacaggatataaaccccaaaaccaacaaaaataa |
323 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34782054 |
ccacaccatgtcagcatatatatatatatatataactcttaaaacaattgaaaccatttttttacaaacaggatataaaccccaaaaccaacaaaaataa |
34781955 |
T |
|
| Q |
324 |
aatacctagaaatatacaaacatgacagaacttaagatatatacaagaacatcaacatttnnnnnnntaattataagaatatcaaaacaataggttgact |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||| |||||| |
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|
| T |
34781954 |
aatacctagaaatatacaaacatgacagaacttaagatatatacaagaacatcaacatttaaaaaaataataatacgaacgtcaaaacaatagtttgact |
34781855 |
T |
|
| Q |
424 |
cac |
426 |
Q |
| |
|
||| |
|
|
| T |
34781854 |
cac |
34781852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 27 - 426
Target Start/End: Complemental strand, 34771309 - 34770907
Alignment:
| Q |
27 |
taaatgaggtggcatatgctacaaaaaatgacgcatatgagaagggagtgaaccgccgtttcatggatgacacaccctccaacacaagctgtattgacat |
126 |
Q |
| |
|
||||| ||||| |||||||||| ||||||| || || |||||||| ||||||| ||||| || || || |||||||||||||||||||||||||| ||| |
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|
| T |
34771309 |
taaataaggtgtcatatgctaccaaaaatgtcggatctgagaaggaagtgaactgccgtctcctgcctgccacaccctccaacacaagctgtattgtcat |
34771210 |
T |
|
| Q |
127 |
gatgaagtactccctgatacataagattatcctttatgggaagtctgctgcgaaggaatcgtcaaacgaacactgaaaccttcaacgaaactcacctcaa |
226 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| ||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34771209 |
gatgaagtactctctgacgcattagattatcctttgtggaaagtcggttgcgaaggagtcgtcaaacgaacactgaaaccttcaacgaaacttgcctcaa |
34771110 |
T |
|
| Q |
227 |
ccacaccatatcagcnnnnnnnnnnnnnnnna---ctcttaaaacaattgaaaccatctttttacaaacaggatataaaccccaaaaccaacaaaaataa |
323 |
Q |
| |
|
|||| |||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34771109 |
ccacgccatgtcagcatatatatatatatatataactcttaaaacaattgaaaccatttttttacaaacaggatataaaccccaaaaccaacaaaaataa |
34771010 |
T |
|
| Q |
324 |
aatacctagaaatatacaaacatgacagaacttaagatatatacaagaacatcaacatttnnnnnnntaattataagaatatcaaaacaataggttgact |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||| |||||| |
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|
| T |
34771009 |
aatacctagaaatatacaaacatgacagaacttaagatatatacaagaacatcaacatttaaaaaaataataatacgaacgtcaaaacaatagtttgact |
34770910 |
T |
|
| Q |
424 |
cac |
426 |
Q |
| |
|
||| |
|
|
| T |
34770909 |
cac |
34770907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 20188236 - 20188107
Alignment:
| Q |
9 |
gaaataccaaaccacagataaatgaggtggcatatgctacaaaaaatgacgcatatgagaagggagtgaaccgccgtttcatggatgacacaccctccaa |
108 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |||| |||| ||| || ||||| ||||||| ||||||||||||| || || || |||||||||||| |
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|
| T |
20188236 |
gaaataccaatccactgataaataaggtgccataagctaacgaaagtgtcgcatcggagaaggaagtgaaccgccgtctcctgtttgtcacaccctccaa |
20188137 |
T |
|
| Q |
109 |
cacaagctgtattgacatgatgaagtactc |
138 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |
|
|
| T |
20188136 |
cacaagatgtattgtcatgatgaagtactc |
20188107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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