View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14825_high_10 (Length: 275)

Name: NF14825_high_10
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14825_high_10
NF14825_high_10
[»] chr8 (40 HSPs)
chr8 (1-174)||(7468233-7468406)
chr8 (5-164)||(20707724-20707885)
chr8 (1-174)||(22499371-22499546)
chr8 (5-164)||(18043228-18043389)
chr8 (1-174)||(23216589-23216762)
chr8 (1-174)||(33170183-33170358)
chr8 (3-174)||(17264432-17264604)
chr8 (206-275)||(7458179-7458248)
chr8 (5-174)||(23118907-23119078)
chr8 (1-114)||(18263530-18263645)
chr8 (206-271)||(7470581-7470646)
chr8 (1-162)||(24554653-24554817)
chr8 (1-91)||(24265927-24266019)
chr8 (211-275)||(6369100-6369164)
chr8 (7-163)||(29295817-29295974)
chr8 (206-268)||(6390077-6390139)
chr8 (1-164)||(45561782-45561950)
chr8 (211-275)||(6351443-6351507)
chr8 (7-118)||(15931261-15931376)
chr8 (7-177)||(25607837-25608009)
chr8 (1-75)||(27233358-27233435)
chr8 (206-275)||(6273649-6273718)
chr8 (206-275)||(6320528-6320597)
chr8 (206-275)||(6362323-6362392)
chr8 (211-275)||(6409334-6409398)
chr8 (1-164)||(17499789-17499955)
chr8 (206-275)||(6330990-6331059)
chr8 (1-74)||(19334175-19334251)
chr8 (9-118)||(22317441-22317553)
chr8 (1-47)||(21234223-21234269)
chr8 (6-132)||(24236968-24237097)
chr8 (7-118)||(37655766-37655881)
chr8 (206-275)||(6423355-6423424)
chr8 (5-143)||(22725532-22725672)
chr8 (7-90)||(24905885-24905971)
chr8 (206-275)||(6287900-6287969)
chr8 (56-126)||(11541997-11542067)
chr8 (7-157)||(11600011-11600164)
chr8 (56-161)||(22311046-22311151)
chr8 (6-75)||(23229455-23229527)
[»] chr5 (17 HSPs)
chr5 (1-164)||(23236485-23236650)
chr5 (6-162)||(24082051-24082211)
chr5 (1-164)||(5623493-5623659)
chr5 (1-164)||(19871846-19872010)
chr5 (1-164)||(3420907-3421073)
chr5 (1-164)||(26561862-26562027)
chr5 (7-163)||(24228017-24228175)
chr5 (1-162)||(29911979-29912143)
chr5 (1-161)||(14345748-14345910)
chr5 (1-160)||(16837814-16837975)
chr5 (56-161)||(20456641-20456746)
chr5 (1-114)||(6454636-6454753)
chr5 (3-47)||(22879831-22879875)
chr5 (56-174)||(11963585-11963703)
chr5 (230-268)||(9606067-9606105)
chr5 (7-74)||(21614949-21615019)
chr5 (8-161)||(23411926-23412081)
[»] chr1 (21 HSPs)
chr1 (1-164)||(5770272-5770437)
chr1 (1-174)||(40555307-40555482)
chr1 (1-174)||(33383854-33384029)
chr1 (1-174)||(41213725-41213899)
chr1 (1-162)||(29217089-29217252)
chr1 (1-162)||(46143710-46143875)
chr1 (1-162)||(9293476-9293641)
chr1 (7-179)||(21193099-21193274)
chr1 (1-155)||(78576-78733)
chr1 (1-162)||(50002023-50002187)
chr1 (7-164)||(5472468-5472630)
chr1 (1-52)||(40438506-40438557)
chr1 (6-114)||(18164147-18164257)
chr1 (1-52)||(12891516-12891567)
chr1 (1-164)||(21041724-21041890)
chr1 (4-162)||(52397595-52397756)
chr1 (7-164)||(17606864-17607025)
chr1 (7-92)||(20957176-20957264)
chr1 (8-164)||(22837682-22837844)
chr1 (8-93)||(36358452-36358541)
chr1 (7-88)||(37236109-37236193)
[»] chr7 (30 HSPs)
chr7 (1-174)||(4482200-4482376)
chr7 (1-174)||(17948092-17948267)
chr7 (1-174)||(9640984-9641159)
chr7 (2-163)||(4436818-4436985)
chr7 (1-118)||(21677619-21677737)
chr7 (1-161)||(18081378-18081539)
chr7 (1-162)||(4444218-4444385)
chr7 (1-132)||(16381845-16381977)
chr7 (6-164)||(9323134-9323295)
chr7 (1-120)||(28717977-28718099)
chr7 (1-118)||(33555606-33555727)
chr7 (6-118)||(28388401-28388516)
chr7 (1-118)||(20587741-20587861)
chr7 (1-162)||(31499177-31499343)
chr7 (1-161)||(39294231-39294394)
chr7 (7-162)||(9609182-9609341)
chr7 (7-162)||(9836754-9836913)
chr7 (7-164)||(48345526-48345686)
chr7 (8-161)||(12245631-12245786)
chr7 (1-118)||(9058742-9058861)
chr7 (7-104)||(14279038-14279138)
chr7 (1-118)||(14938640-14938760)
chr7 (1-118)||(15366233-15366353)
chr7 (1-114)||(18921191-18921295)
chr7 (57-161)||(17922977-17923081)
chr7 (7-118)||(34243261-34243375)
chr7 (5-75)||(3194185-3194257)
chr7 (7-164)||(5617394-5617555)
chr7 (8-93)||(10863065-10863154)
chr7 (5-57)||(18366201-18366253)
[»] chr6 (16 HSPs)
chr6 (1-174)||(15006696-15006871)
chr6 (1-164)||(34964864-34965029)
chr6 (7-164)||(12311080-12311239)
chr6 (1-162)||(29603507-29603671)
chr6 (6-117)||(19670472-19670586)
chr6 (36-174)||(22468174-22468314)
chr6 (6-90)||(31469662-31469749)
chr6 (3-132)||(29163023-29163155)
chr6 (1-93)||(19852232-19852327)
chr6 (1-164)||(22595736-22595902)
chr6 (1-164)||(22846055-22846219)
chr6 (1-161)||(25649187-25649348)
chr6 (1-93)||(941179-941273)
chr6 (5-132)||(17858476-17858605)
chr6 (8-90)||(23218920-23219005)
chr6 (7-40)||(6092467-6092500)
[»] chr2 (9 HSPs)
chr2 (1-174)||(6092385-6092559)
chr2 (4-164)||(24271983-24272146)
chr2 (1-114)||(30995105-30995222)
chr2 (3-163)||(43640284-43640446)
chr2 (89-174)||(25132242-25132326)
chr2 (6-118)||(19648022-19648137)
chr2 (1-75)||(24839357-24839435)
chr2 (8-93)||(23823642-23823730)
chr2 (8-93)||(23825586-23825674)
[»] chr3 (26 HSPs)
chr3 (1-164)||(22637264-22637427)
chr3 (6-174)||(43429604-43429775)
chr3 (10-177)||(6817696-6817866)
chr3 (1-118)||(31416339-31416457)
chr3 (1-164)||(21168780-21168946)
chr3 (1-162)||(4164321-4164486)
chr3 (1-174)||(17320644-17320818)
chr3 (1-164)||(41659547-41659713)
chr3 (8-161)||(10902420-10902574)
chr3 (2-162)||(4147769-4147935)
chr3 (1-164)||(12950501-12950668)
chr3 (3-162)||(18968011-18968172)
chr3 (1-164)||(33371440-33371605)
chr3 (1-161)||(8602237-8602400)
chr3 (5-174)||(15551962-15552134)
chr3 (1-161)||(17390937-17391099)
chr3 (5-162)||(6230735-6230896)
chr3 (1-93)||(14819972-14820066)
chr3 (7-164)||(5230688-5230848)
chr3 (56-161)||(37918959-37919064)
chr3 (8-88)||(15988468-15988551)
chr3 (5-174)||(17760870-17761038)
chr3 (5-174)||(19062190-19062358)
chr3 (7-75)||(325274-325344)
chr3 (1-90)||(14182539-14182631)
chr3 (1-52)||(38378358-38378410)
[»] chr4 (16 HSPs)
chr4 (1-164)||(47470409-47470576)
chr4 (1-157)||(19557265-19557421)
chr4 (1-174)||(13596086-13596261)
chr4 (5-174)||(50224222-50224394)
chr4 (1-162)||(10239519-10239682)
chr4 (6-114)||(13449139-13449250)
chr4 (1-118)||(5407104-5407223)
chr4 (1-164)||(41919325-41919489)
chr4 (1-115)||(18241312-18241429)
chr4 (3-161)||(19624111-19624273)
chr4 (1-120)||(14569338-14569458)
chr4 (7-118)||(41258500-41258615)
chr4 (7-88)||(54366200-54366284)
chr4 (1-75)||(12729339-12729416)
chr4 (7-157)||(5373199-5373351)
chr4 (7-93)||(12246382-12246471)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-162)||(99079-99243)
[»] scaffold0004 (2 HSPs)
scaffold0004 (56-174)||(84413-84531)
scaffold0004 (1-162)||(25484-25648)
[»] scaffold0148 (1 HSPs)
scaffold0148 (6-114)||(35860-35971)
[»] scaffold0561 (1 HSPs)
scaffold0561 (8-161)||(4820-4976)
[»] scaffold0442 (2 HSPs)
scaffold0442 (6-164)||(2044-2208)
scaffold0442 (5-93)||(14254-14345)
[»] scaffold0480 (1 HSPs)
scaffold0480 (1-153)||(11086-11241)
[»] scaffold0133 (1 HSPs)
scaffold0133 (6-114)||(3808-3919)
[»] scaffold0115 (1 HSPs)
scaffold0115 (1-166)||(19273-19440)
[»] scaffold0387 (1 HSPs)
scaffold0387 (1-162)||(3101-3267)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-161)||(99019-99183)
scaffold0009 (7-47)||(66481-66521)
[»] scaffold0001 (1 HSPs)
scaffold0001 (6-114)||(141379-141491)
[»] scaffold0165 (1 HSPs)
scaffold0165 (6-114)||(20082-20193)
[»] scaffold0020 (1 HSPs)
scaffold0020 (6-118)||(103922-104035)
[»] scaffold0327 (1 HSPs)
scaffold0327 (1-164)||(6961-7126)
[»] scaffold0219 (2 HSPs)
scaffold0219 (1-111)||(26144-26257)
scaffold0219 (83-162)||(26045-26125)
[»] scaffold0193 (1 HSPs)
scaffold0193 (7-164)||(2881-3041)
[»] scaffold0031 (1 HSPs)
scaffold0031 (7-164)||(99266-99426)
[»] scaffold0174 (1 HSPs)
scaffold0174 (1-115)||(506-624)
[»] scaffold0107 (1 HSPs)
scaffold0107 (7-164)||(11375-11536)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-75)||(45745-45822)
[»] scaffold0032 (1 HSPs)
scaffold0032 (6-118)||(106731-106846)
[»] scaffold0021 (2 HSPs)
scaffold0021 (19-164)||(19889-20037)
scaffold0021 (19-164)||(29465-29613)
[»] scaffold0010 (2 HSPs)
scaffold0010 (7-161)||(29042-29200)
scaffold0010 (56-143)||(123520-123607)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-120)||(247918-248038)
[»] scaffold0047 (1 HSPs)
scaffold0047 (8-161)||(73362-73518)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-104)||(199478-199584)
[»] scaffold0090 (1 HSPs)
scaffold0090 (7-118)||(7264-7376)
[»] scaffold0151 (1 HSPs)
scaffold0151 (108-164)||(31717-31773)
[»] scaffold0025 (1 HSPs)
scaffold0025 (8-171)||(2426-2592)
[»] scaffold1068 (1 HSPs)
scaffold1068 (1-35)||(1252-1286)
[»] scaffold0017 (1 HSPs)
scaffold0017 (7-157)||(10223-10375)
[»] scaffold0013 (1 HSPs)
scaffold0013 (7-93)||(33415-33503)
[»] scaffold0236 (1 HSPs)
scaffold0236 (7-164)||(25443-25604)
[»] scaffold0138 (1 HSPs)
scaffold0138 (100-164)||(18665-18728)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 7468233 - 7468406
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatataaaaattctcaacagttttagcggatataaaccacacactt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||    
T  7468233 atataaatattcaagaaatatacgccacgtcatcaacaaaatccaaacaacagacatataaaaattctcaacagttgcagcggatataaaccacacactt 7468332  T
Q  101 caaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  7468333 caaaagaatacatgccatgaaatcaagatacaacatcataaaagttctccaaatcccgacaaatgggcaaatct 7468406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 20707724 - 20707885
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatat--aaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||  ||| |||| |||||| |||| |||    
T  20707724 aaatattcaagaaatagacgccacatcatcaacaaaatccaaacaacatgcatatataaaaattctcaacagttgcagcagatagaaaccatacacctca 20707823  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||||||||||| ||||| ||||| ||||||||| |||||| |||| |||||||||||||||    
T  20707824 aaagtatacatgacataagatcaaaatacaacatcataaaaattcttcaaatcccgacaaat 20707885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 22499546 - 22499371
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||  |||||||||| | || |||     
T  22499546 atataaatattcaagaaatagacgctacgtcatcaacaaaatccaaacaacaggcatatataaaaattctcaacagttgcagcggatatagatcatacat 22499447  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     || ||||| |||||||||| | ||||| |||||| || |||||| |||||||||||||||||||| | |||||||    
T  22499446 ctccaaagtctacatgccatgagatcaaaatacaatatcataaaaattctccaaatcccgacaaatgggcaaatct 22499371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 18043389 - 18043228
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||  ||||||||||||||||  ||  |||||||| || |||| |||    
T  18043389 aaatattcaagaaatagacgccacatcatcaacaaattccaaacaacaggcatatataaaaattctcaacagttgcagaagatataaatcatacacctca 18043290  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||||||||||||||| |  |||| ||||| ||| |||||  ||||||||||||||||||||    
T  18043289 aaagtatacatgccatgaggtcaaaatacatcatcataaagattctccaaatcccgacaaat 18043228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 23216589 - 23216762
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||||||||| |||||||  ||||||||||||||||  ||| ||||||||||| ||||    
T  23216589 atataaatattcaagaaatagacgttacgtcttcaacaaa-tccaaacaacatgcatatataaaaattctcaacagttgcagctgatataaaccatacac 23216687  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     ||||| ||||||||||||| | ||||| ||||| ||| |||||| |||||||  ||||||||||| | |||||||    
T  23216688 ctcaaa-gtatacatgccatgagatcaaaatacatcatcataaaaattctccatttcccgacaaatgggcaaatct 23216762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 33170183 - 33170358
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||| || || ||  ||||||||| |||||| ||||  ||| |||||||| || |||    
T  33170183 atataaatattcaagaaatagacgccacgtcatcaacaataacgaaatcatcaggcatatataaaaaatctcaatagttgcagcagatataaatcataca 33170282  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    | ||||||||||||||| ||| | ||||| ||||| ||| |||||| |||||||||||||||||||| |||||||||    
T  33170283 cctcaaaagtatacatgtcatgagatcaaaatacatcatcataaaa-ttctccaaatcccgacaaatggacaaatct 33170358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 17264432 - 17264604
Alignment:
Q  3 ataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaa-caagcatataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||||| | ||||| ||||||||| |||||||  || |||||||||||| |||||||||   |||||||||||| || |||  ||    
T  17264432 ataaatattcaagaaatagacactacgtcttcaacaaaaaccaaacatgcatgcatataaaaatcctcaacagtcgcagcggatataaatcatacatctc 17264531  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     |||||||||||||||| | ||||| ||||| ||| ||| || |||||||||||||||||||| | |||||||    
T  17264532 caaagtatacatgccatgagatcaaaatacatcatcatataaattctccaaatcccgacaaatgggcaaatct 17264604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 7458179 - 7458248
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7458179 tagtagaaattcacatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 7458248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 23119078 - 23118907
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    |||||||||||||| |||||| | || |||||||||| ||||| ||| | ||  ||||||||||||||||||||   |||||||||||| || |||| ||    
T  23119078 aaatattcaagaaacagacgctatgtgatcaacaaaaaccaaatcaatatgcatatataaaaattctcaacagtcgcagcggatataaatcatacacctc 23118979  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     |||||||||||||||| | ||||| ||||||||| |||||| || ||||||||||||||||| | |||||||    
T  23118978 -aaagtatacatgccatgagatcaaaatacaacatcataaaaattatccaaatcccgacaaatgggcaaatct 23118907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 18263645 - 18263530
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||  ||| || |||||||||||||||   ||||||||||||||| ||||    
T  18263645 atataaaaattcaagaaatagacgtcacgtcatcaacaaaatccaaaacaacatccatgtataaaattctcaacagtcgcagcggatataaaccatacac 18263546  T
Q  99 ttcaaaagtatacatg 114  Q
     |||||||||||||||    
T  18263545 ctcaaaagtatacatg 18263530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 7470581 - 7470646
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaa 271  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7470581 tagtagaaattcacatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaa 7470646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 24554817 - 24554653
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaac-aaaatccaaacaacaag--catataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |   ||||||||||| ||||||||   |||||||||||| || |||    
T  24554817 atataaatattcaagaaatagacgccacgtcatcaacaaaaatccaaacaacgggtatatataaaaattatcaacagtcgcagcggatataaatcataca 24554718  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
      || |||||||||||||||| | ||||| ||||| ||| ||| || |||||  ||| |||||||    
T  24554717 tctccaaagtatacatgccatgagatcaaaatacatcatcatataaattctctgaattccgacaa 24554653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 24265927 - 24266019
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaa-tccaaacaacaagcatata-aaaattctcaacagttttagcggatataaac 91  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| || ||||||||||||||||  |||||||||||||    
T  24265927 atataaatattcaagaaatagacgccacgtcatcaacaaaattcaaaacaacatgcatgtataaaattctcaacagttgcagcggatataaac 24266019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 6369100 - 6369164
Alignment:
Q  211 gaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6369100 gaaattgacatattcatcaacccatgacttaatagcagcccatatctctagtccatctgaagcat 6369164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 29295817 - 29295974
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaa--caaaatcc-aaacaacaagcatataaaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    |||||||||||||||||| |||||||||||  |||||||| |||||||| |||| || ||| ||||||||||   ||||||||||||||| | ||||| |    
T  29295817 atattcaagaaatagacgtcacgtcatcaaaccaaaatccaaaacaacatgcatgtataaaatctcaacagtcgcagcggatataaaccatatacttc-a 29295915  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaa 163  Q
    ||||||||||| ||| | ||||| |||||  || ||||||||||||||| | ||||||||    
T  29295916 aagtatacatgtcatgatatcaa-atacataatcataaaagttctccaagttccgacaaa 29295974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 6390077 - 6390139
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatca 268  Q
    |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6390077 tagtagaaattgacatattcatcaacccatgacttaatagcagcccatatctctagtccatca 6390139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 45561950 - 45561782
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa--caaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccaca 95  Q
    ||||||||||||||||||||||||| || |||||||  ||||| ||||| ||||| || ||||  |||||| ||||||||   | |||||||||| || |    
T  45561950 atataaatattcaagaaatagacgctacatcatcaattcaaaaaccaaatcaacatgcgtatattaaaattatcaacagtcgcatcggatataaatcata 45561851  T
Q  96 cacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||| |||| |||||||||||||  | ||||| ||||| ||| ||| || ||||||||||||||||||||    
T  45561850 cacctcaagagtatacatgccaagagatcaaaatacatcatcatataaattctccaaatcccgacaaat 45561782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 6351443 - 6351507
Alignment:
Q  211 gaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  6351443 gaaattcacatattcaccaacccatgacttaatggcagcccatatttctagtccatcagaagcat 6351507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 15931261 - 15931376
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatcc--aaacaacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| ||||||||| |||||||||  |||||||| ||||  ||||||||||||||||||   ||||||||||||||| | |||||    
T  15931261 atattcaagaaatagacgctacgtcatcatacaaaatcccaaaacaacatgcatgtataaaaattctcaacagtcgcagcggatataaaccatatacttc 15931360  T
Q  102 aaaagtatacatgccat 118  Q
     |||| |||||||||||    
T  15931361 -aaagcatacatgccat 15931376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 25607837 - 25608009
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaa-aatccaaacaacaagcatataaaaatt--ctcaacagttttagcggatataaaccacacacttcaa 103  Q
    |||||||||||||||| || || || ||||||| |||| |||||||| ||||||| |||||  |||||||||   |||||||||||| || |||  ||||    
T  25607837 atattcaagaaatagatgctacttcttcaacaacaatctaaacaacatgcatatataaattttctcaacagtcgcagcggatataaatcatacatctcaa 25607936  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatcttca 177  Q
    | ||||||||||||| | ||||| ||||| ||| |||  | |||||||||||||||||| | | ||||||||||    
T  25607937 a-gtatacatgccatgagatcaaaatacatcatcatatcaattctccaaatcccgacaattgggcaaatcttca 25608009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27233435 - 27233358
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagcat--ataaaaattctcaacagt 75  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  27233435 atataaatattcaagaaatagacgtcacatcatcaacaaaatccaaaacaacatgcatacataaaaattctcaacagt 27233358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 6273649 - 6273718
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| |||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  6273649 tagtagaaattcacatattcttcaacccatgacttaataacagcccatatctctaatccatcagcagcat 6273718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 6320528 - 6320597
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| |||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  6320528 tagtagaaattcacatattcttcaacccatgacttgatagcatcccatatctctagtccatcagcagcat 6320597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 6362323 - 6362392
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| |||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  6362323 tagtagaaattgacatattcatcaacccatgatttaatagcagcccatatttctagtccatctgaagcat 6362392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 6409334 - 6409398
Alignment:
Q  211 gaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||    
T  6409334 gaaatttacatattcttcaacccatgacttaatagcagcccatatctctaatccatcagtagcat 6409398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 17499789 - 17499955
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caaca--agcatataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||  ||||| ||||||||| | ||| |||||  |  |||||||| |||||||||||   |||||||||||| || |||    
T  17499789 atataaatattcaagaaatagacgttacgtcttcaacaaaaactaaatcaacatgaatatataaaatttctcaacagtcgcagcggatataaatcataca 17499888  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
      || ||| ||||||||||||  |||||| ||||| ||| ||| || |||||| |||||| ||||||    
T  17499889 tctccaaaatatacatgccatgcaatcaaaatacatcatcatataaattctccgaatcccaacaaat 17499955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 6330990 - 6331059
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| |||| ||| |||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  6330990 tagtagaaactcacatattcttcaacccatgacttgatagcatcccatatctctagtccatcagcagcat 6331059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19334251 - 19334175
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaac-aaaatccaaacaacaagc--atataaaaattctcaacag 74  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||  |||||| ||||||||||||    
T  19334251 atataaatattcaagaaatagacgttacgtcatcaacaaaaatccaaacaacatgcatatataagaattctcaacag 19334175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 22317441 - 22317553
Alignment:
Q  9 attcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacacacttcaaaa 105  Q
    ||||||||||||||||  ||||| |||| |||| ||||| ||||| ||  ||||||||||||||||||||   |||||||||||| || | || ||||||    
T  22317441 attcaagaaatagacgttacgtcttcaataaaaaccaaatcaacatgcgtatataaaaattctcaacagtggcagcggatataaatcatatacctcaaaa 22317540  T
Q  106 gtatacatgccat 118  Q
    |||||||||||||    
T  22317541 gtatacatgccat 22317553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21234269 - 21234223
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa 47  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||    
T  21234269 atataaatattcaagaaatagacgccacatcatcaacaaaaaccaaa 21234223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 24236968 - 24237097
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||  |||||||||||||||||| |  ||| |||||||||  | |||  ||     
T  24236968 aatattcaagaaatagacgctacgtcttcaacaaaaaccaaatcaacatgcatatataaaaattctcaacattcgtagtggatataaatgatacatctcc 24237067  T
Q  103 aaagtatacatgccataaaatcaagataca 132  Q
    ||| |||||||| ||||| ||||| |||||    
T  24237068 aaaatatacatgtcataagatcaatataca 24237097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 37655881 - 37655766
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaa--caaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    |||||||| |||||||||| ||||||||||  ||||| ||||| ||||| |||||||  |||||||||||||||   ||||||||||||||| | |||||    
T  37655881 atattcaaaaaatagacgctacgtcatcaatacaaaaaccaaaacaacatgcatatataaaaattctcaacagtcgcagcggatataaaccatatacttc 37655782  T
Q  102 aaaagtatacatgccat 118  Q
     |||| |||||||||||    
T  37655781 -aaagcatacatgccat 37655766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 6423355 - 6423424
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| |||| ||| ||||||  ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  6423355 tagtagaaactcacatattctccaacccatgtcttgatagcagcccatatctctagtccatccgaagcat 6423424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 22725672 - 22725532
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata-aaaatt-ctcaacagttttagcggatataaaccacaca-cttc 101  Q
    ||||||||||||||||||||| || || ||||||||   ||||||||| ||||||| |||||| |||||||||   |||||||||||| || ||| || |    
T  22725672 aaatattcaagaaatagacgctacatcttcaacaaatatcaaacaacatgcatatataaaattcctcaacagtcgcagcggatataaatcatacatctcc 22725573  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaa 143  Q
    ||||| ||||||| ||||| ||||| ||||| ||| ||||||    
T  22725572 aaaag-atacatgtcataagatcaatatacatcatcataaaa 22725532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 24905885 - 24905971
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaaca-acaagcat--ataaaaattctcaacagttttagcggatataaa 90  Q
    ||||||||||||||||| | ||||| ||||||||| ||||||| ||| ||||  ||||| ||||||||||||  |||||||||||||    
T  24905885 atattcaagaaatagacactacgtcttcaacaaaaaccaaacatacatgcatacataaatattctcaacagtcgtagcggatataaa 24905971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 6287900 - 6287969
Alignment:
Q  206 tagtggaaattcagatattcatcaacccatgacttaatagcagcccatatctctagtccatcagaagcat 275  Q
    |||| ||||| || |||||| ||||||||||||||||| || | ||||||||||| |||||||| |||||    
T  6287900 tagtagaaatacacatattcttcaacccatgacttaattgctgtccatatctctaatccatcagcagcat 6287969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 11541997 - 11542067
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaa 126  Q
    ||||||||||||||||||||  || |||||||||| || |||  || |||||||||||| ||||| |||||    
T  11541997 atataaaaattctcaacagtcgtaacggatataaatcatacatctccaaagtatacatgtcataagatcaa 11542067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 11600011 - 11600164
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||  ||||||||||| ||||||||   |||||||||| |  | ||   || |    
T  11600011 atattcaagaaatagacgctacgtcttcaacaaaaacaaaatcaacatgcatatataaaaattatcaacagtcgcagcggatatagataatacttctcca 11600110  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatccc 157  Q
    ||||  ||||||||||| ||||| ||||| ||| ||| || |||| ||||||||    
T  11600111 aagtcgacatgccataagatcaaaatacatcatcatataaattcttcaaatccc 11600164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 22311046 - 22311151
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatc 155  Q
    ||||||||||||||||| ||   | | |||||||| || |||| |||||||||| |||| ||| | ||||| ||||| ||| ||  || |||||||||||    
T  22311046 atataaaaattctcaaccgtcccaactgatataaatcatacacctcaaaagtattcatgtcatgagatcaaaatacatcatcatgtaaattctccaaatc 22311145  T
Q  156 ccgaca 161  Q
    ||||||    
T  22311146 ccgaca 22311151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 23229527 - 23229455
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatca-acaaaa-tccaaacaa-caagcatataaaaattctcaacagt 75  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||| ||  |||||| ||| ||||||||||    
T  23229527 aatattcaagaaatagacgctacgtcatcatacaaaattccaaacaatcatacatatataaaatctcaacagt 23229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 23236650 - 23236485
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||  ||||||||||||||||  |||||||||||| || ||||    
T  23236650 atataaatattcaagaaatagacgtcacgtcatcaacaaaatccaaacaacagacatatataaaaattctcaacagttgcagcggatataaatcatacac 23236551  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
     ||||||||||||||||||| | ||||| ||||||||| |||||| ||||||||||||||||||||    
T  23236550 ctcaaaagtatacatgccatgagatcaaaatacaacatcataaaaattctccaaatcccgacaaat 23236485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 24082051 - 24082211
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||  |||||||||||||||||||  ||||||||||||||| | | ||||    
T  24082051 aatattcaagaaatagacgccacgtcatcaacaaaatccaaaacaacatgcatgtataaaaattctcaacagttgcagcggatataaaccatataattca 24082150  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
    |||||||||||| ||| | ||||| ||||| ||| || ||| |||||| ||||||||||||    
T  24082151 aaagtatacatgacatgatatcaaaatacatcatcatcaaaattctccaaaatcccgacaa 24082211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 5623659 - 5623493
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||  |||| | ||  |||||||||||||||||||  |||||||||||| || |||    
T  5623659 atataattattcaagaaatagacgtcacgtcatcaacaaaatccaaaataacatgtatgtataaaaattctcaacagttgcagcggatataaatcataca 5623560  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | |||| |||||||||| ||| | ||||  ||||| ||| |||||| ||||||||||||||||||||    
T  5623559 catcaatagtatacatgtcatgatatcacaatacatcatcataaaaattctccaaatcccgacaaat 5623493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19871846 - 19872010
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||| ||||  ||| |||| | | || |||     
T  19871846 atataaatattcaagaaatagacgctacgtcatcaacaaaatccaaacaacaggcatatataaaaattctcaatagttgcagcagatacagatcatacat 19871945  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
     || ||||| |||||| ||| | ||||| ||||||||| |||||| ||||||||||||||||||||    
T  19871946 ctccaaagtctacatgtcatgagatcaaaatacaacatcataaaa-ttctccaaatcccgacaaat 19872010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3421073 - 3420907
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| || | |||  ||||||||||||||||| |   ||| |||||||| || |||    
T  3421073 atataaatattcaagaaatagacgtcacgtcatcaacaaaatccaaaataagatgcatgtataaaaattctcaacaatcgcagcagatataaatcataca 3420974  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | ||||||||||||||| ||| | ||||| ||||| |||||||||  || |||| ||||||||||||    
T  3420973 cctcaaaagtatacatgtcatgatatcaaaatacatcattataaattttttccacatcccgacaaat 3420907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 26562027 - 26561862
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata-aaaattctcaacagttttagcggatataaaccacacac 98  Q
    |||||||||||||||||||||||  || ||| ||||||||| ||||| ||||| |||| || |||||||||||||||   |||||||||||| || || |    
T  26562027 atataaatattcaagaaatagacatcatgtcctcaacaaaaaccaaatcaacatgcatgtataaaattctcaacagtcgcagcggatataaatcatactc 26561928  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
     ||||||||||||| ||||| | ||||| || ||  || |||||| ||||||||||||||||||||    
T  26561927 ctcaaaagtatacaagccatgatatcaaaattcattatcataaaatttctccaaatcccgacaaat 26561862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 24228175 - 24228017
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||| |||  ||||||||||| |||||||   ||||||||||||||| | ||||| |    
T  24228175 atattcaagaaatagacgctatgtcatcaacaaaatccaaaacaacatgcatgtataaaaattcccaacagtcgcagcggatataaaccatatacttc-a 24228077  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaa 163  Q
    ||| ||||||||||| | ||||| |||||   | |||||| |||||||| ||||||||||    
T  24228076 aagcatacatgccatgatatcaaaatacatagtcataaaaattctccaagtcccgacaaa 24228017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29911979 - 29912143
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||  ||||||||||  |||||||   ||| |||| ||| || |||    
T  29911979 atataaatattcaagaaatagacgtcacatcatcaacaaaatccgaaacaacatgcatgtataaaaatttccaacagtcgcagcagataaaaatcataca 29912078  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
      ||||||||||||||||||| | ||||| | |   || ||||||| ||||||||||||||||||    
T  29912079 tctcaaaagtatacatgccatgatatcaaaaaatctcaatataaaaattctccaaatcccgacaa 29912143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 14345910 - 14345748
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| ||| |  |  ||||||| ||||||||||||   ||| |||||||| || |||     
T  14345910 atataaatattcaagaaatagacgctacgtcttcaacaaaatccaaccaatagacatatataaatattctcaacagtcacagcagatataaatcatacat 14345811  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
     || |||||||||||| ||| | ||||| ||||| ||| ||| || |||| ||| ||||||||    
T  14345810 ctccaaagtatacatgtcatgagatcaaaatacatcatcatataaattcttcaagtcccgaca 14345748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 16837975 - 16837814
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| | ||| |||||||||   ||  |||| ||  |||||||||||||||| |||   |||||||||||| |  |||     
T  16837975 atataaatattcaagaaatagacgctaggtcttcaacaaaacaaaattaacatgcatatataaaaattctcaatagtcgcagcggatataaatcttacat 16837876  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgac 160  Q
     || ||||| |||||||||||| || || ||||||||| ||| || ||||||||||||||||    
T  16837875 ctccaaagtctacatgccataagataaaaatacaacatcatataaattctccaaatcccgac 16837814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 20456746 - 20456641
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatc 155  Q
    ||||||||||||||||||||   |||||||||||| || |||  || ||| |||||||||||| | ||||| ||||| ||| ||| || |||||||||||    
T  20456746 atataaaaattctcaacagtcacagcggatataaatcatacatctccaaaatatacatgccatgagatcaaaatacatcatcatataaattctccaaatc 20456647  T
Q  156 ccgaca 161  Q
    ||||||    
T  20456646 ccgaca 20456641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6454636 - 6454753
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa--caaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacac 96  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| ||| |||| |||| || |||||||| ||||||   |||||||| |||||| |     
T  6454636 atataaatattcaagaaatagacgtcacgtcatcaactcaaaatccaaaataacatgcatgtataaaattcttaacagtcgcagcggatacaaaccatat 6454735  T
Q  97 acttcaaaagtatacatg 114  Q
    | |||||||| |||||||    
T  6454736 aattcaaaagcatacatg 6454753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 22879831 - 22879875
Alignment:
Q  3 ataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa 47  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  22879831 ataaatattcaagaaatagacgccacgtcattcacaaaatccaaa 22879875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 11963585 - 11963703
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatc 155  Q
    |||||||||||||||| |||   |||||||||||| || |||  |||||| |||| ||| ||||| ||||| ||||| ||| ||| ||  ||||||||||    
T  11963585 atataaaaattctcaatagtcgcagcggatataaatcatacatctcaaaaatataaatgtcataagatcaatatacatcatcatataaaatctccaaatc 11963684  T
Q  156 ccgacaaatagacaaatct 174  Q
    | ||||||| | |||||||    
T  11963685 ctgacaaatgggcaaatct 11963703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 9606105 - 9606067
Alignment:
Q  230 acccatgacttaatagcagcccatatctctagtccatca 268  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  9606105 acccatgacttaatagcatcccatatctcgagtccatca 9606067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 21614949 - 21615019
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatcc-aaacaacaagcatata-aaaattctcaacag 74  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||| |||| || |||| |||||||||    
T  21614949 atattcaagaaatagacgctacgtcatcatacaaaatccaaaacaacatgcatgtataaaaatctcaacag 21615019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 23411926 - 23412081
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttcaaa 104  Q
    |||||||||||||||||  |||||  ||| |||| ||||| ||||| |||  ||||||||||||||| |||   | || ||||||| || |||  || ||    
T  23411926 tattcaagaaatagacgttacgtctacaataaaaaccaaatcaacatgcatgtataaaaattctcaatagtcgcaccgaatataaatcatacatctccaa 23412025  T
Q  105 agtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    |||||||||||||| | ||||| ||||| ||| ||| || |||||||||||| ||||    
T  23412026 agtatacatgccatgagatcaa-atacatcatcatataaattctccaaatcctgaca 23412081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 5770437 - 5770272
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||  |||||||||||||||||||||  |||||||||| |||| ||||    
T  5770437 atataaatattcaagaaatagacgccacgtcatcaacaagaaccaaacaacatgcttatataaaaattctcaacagttgcagcggatatagaccagacac 5770338  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
     ||||||||||| ||||||| | ||||| ||||||||| |||||| ||||||||||||||||||||    
T  5770337 ctcaaaagtatatatgccatgagatcaaaatacaacatcataaaaattctccaaatcccgacaaat 5770272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 40555307 - 40555482
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatat--aaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||  |||||||||||||||||  ||||||||||||||| |||    
T  40555307 atataaatattcaagaaatagacgccacgtcatcaacaaaaacaaaatcaacaggcatatataaaaattctcaacagttgcagcggatataaaccataca 40555406  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    | |||| |||||||||| ||| | ||||| ||||| ||| |||||| |||| ||||||||||||||| | |||||||    
T  40555407 cctcaatagtatacatgtcatgagatcaaaatacatcatcataaaa-ttcttcaaatcccgacaaatgggcaaatct 40555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 33383854 - 33384029
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||  |||||||||||||||||||||  |||||||||| | || |||     
T  33383854 atataaatattcaagaaatagacgttacgtcatcaagaaaatccaaacaacaagcatatataaaaattctcaacagttgcagcggatatagatcatacat 33383953  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     || ||||| |||||| ||| | ||||| ||||||||| |||||| |||||||||| ||||||||| | |||||||    
T  33383954 ctccaaagtctacatgtcatgagatcaaaatacaacatcataaaaattctccaaattccgacaaatgggcaaatct 33384029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 41213899 - 41213725
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||  ||||||||||||||||  ||| ||||||||||| ||||    
T  41213899 atataaatattcaagaaatagacgctacgtcatcaacaaaa-ccaatcaacatgcatatataaaaattctcaacagttgcagcagatataaaccatacac 41213801  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     |||||||||||||||  || | || || ||||| ||| |||||| |||||||||||||||||||| | |||||||    
T  41213800 ctcaaaagtatacatgtaatgagattaaaatacatcatcataaaaattctccaaatcccgacaaatgggcaaatct 41213725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29217089 - 29217252
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata-aaaattctcaacagttttagcggatataaaccacacac 98  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||| ||||| |||| || ||||||||||||||||  ||||||||||||||| | |     
T  29217089 atataaatattcaagaaatatacgctacgtcatcaacaaaaaccaaaacaacatgcatgtataaaattctcaacagttgcagcggatataaaccatataa 29217188  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    |||||||| |||||||| |  ||||||| ||||||||| |||||| |||||||||| |||||||    
T  29217189 ttcaaaagcatacatgctaagaaatcaaaatacaacatcataaaaattctccaaattccgacaa 29217252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 46143710 - 46143875
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||  |||||||||||||||||||   ||||||||||||| | |||    
T  46143710 atataaatattcaagaaatagacgtcacgtcatcaacaaaatccaaaacaacatccatgtataaaaattctcaacagtcgcagcggatataaacgataca 46143809  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
    | ||||||||||||||| ||| | ||||| ||||| ||| || ||| |||||| ||||||||||||    
T  46143810 cctcaaaagtatacatgtcatgatatcaaaatacatcatcatcaaaattctccaaaatcccgacaa 46143875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 9293641 - 9293476
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||| | ||||||||||||| | ||| ||||| |||||||  |||||||||||||||   |||||||||||| || | |    
T  9293641 atataaatattcaagaaatagacgctatgtcatcaacaaaaactaaatcaacatgcatatataaaaattctcaacagtcgcagcggatataaatcatata 9293542  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
     ||||||| |||||||| ||| | ||||| ||||||||| || ||| |||||| ||||||||||||    
T  9293541 attcaaaaatatacatgtcatgatatcaaaatacaacatcatcaaaattctccaaaatcccgacaa 9293476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 21193099 - 21193274
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||| ||||||||| ||||||| |||| ||||| ||||  ||||||||||||||||||   ||||||||||||||| | |||||     
T  21193099 atattcaagaaatagacgctacgtcatcatacaaaattcaaaacaacatgcatgtataaaaattctcaacagtcgcagcggatataaaccatatacttc- 21193197  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatcttcaaa 179  Q
    |||| |||||||| || | ||||| |||||  || |||||||||||| || ||||||||||| |  |||||||||||    
T  21193198 aaagcatacatgctatgatatcaaaatacataatcataaaagttctctaagtcccgacaaatgggtaaatcttcaaa 21193274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 78733 - 78576
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaa-tccaaacaacaagcatat--aaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||| | | ||||||||||||| ||||||||||| ||||||  ||||||||||||||||   |||||||||| | || |||    
T  78733 atataaatattcaagaaatagacactatgtcatcaacaaaaatccaaacaacatgcatatgtaaaaattctcaacagtggcagcggatatagatcataca 78634  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatc 155  Q
      || |||||||||||||||| | ||||| ||||| ||| ||  || |||||||||||    
T  78633 tctccaaagtatacatgccatgagatcaaaatacatcatcatgtaaattctccaaatc 78576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 50002187 - 50002023
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||  ||||||||||| |||||||   |||||||| | | || |||    
T  50002187 atataaatattcaagaaatagtcgtcacgtcatcaacaaaatccaaaacaacatgcatgtataaaaattcccaacagtcgcagcggataaatatcataca 50002088  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
      ||||| ||||||||||||| | || || |||   || ||||||| ||||||||||||||||||    
T  50002087 tctcaaaggtatacatgccatgatataaaaatatctcaatataaaaattctccaaatcccgacaa 50002023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 5472630 - 5472468
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaa--caaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| ||||||||||  ||||||||||| ||||| ||||  |||||||||| |||||||   |||||||| | | || |||  ||    
T  5472630 atattcaagaaatagacgctacgtcatcaattcaaaatccaaaacaacatgcatgtataaaaattcccaacagtcgcagcggataaagatcatacatctc 5472531  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||||||||||||| ||| | ||| | ||||| ||| ||| || ||||||||||||||||||||    
T  5472530 aaaagtatacatgtcatgatatcgaaatacatcatcatataaattctccaaatcccgacaaat 5472468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40438557 - 40438506
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaaca 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40438557 atataaatattcaagaaatagacgtcacgtcatcaacaaaatccaaacaaca 40438506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 18164147 - 18164257
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||||| | || |||||||||| |||| ||||| ||||  |||||||||||||||||||  |||||||||||| || |||| ||     
T  18164147 aatattcaagaaatagacgccgcatcttcaacaaaatgcaaaacaacatgcatgtataaaaattctcaacagttgcagcggatataaatcatacacctc- 18164245  T
Q  103 aaagtatacatg 114  Q
    ||||||||||||    
T  18164246 aaagtatacatg 18164257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12891567 - 12891516
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaaca 52  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  12891567 atataaatattcaagaaatagacgctacgtcatcaacataatccaaacaaca 12891516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 21041724 - 21041890
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatataaaaa--ttctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||| |||||| ||| | ||||||||| | ||| ||||| ||||||| |||  |||||||||||   |||||||||||| || |||    
T  21041724 atataaatattcaagaaacagacgctacgccttcaacaaaaactaaatcaacatgcatatataaaatttctcaacagtcgcagcggatataaatcataca 21041823  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
      || ||||||||| || |||   ||||| ||||| ||| ||| || ||||||||||||||||||||    
T  21041824 tctccaaagtatacttgtcatgtgatcaaaatacatcatcatataaattctccaaatcccgacaaat 21041890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 52397595 - 52397756
Alignment:
Q  4 taaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||| |||||||||| ||| |||||||||||| ||||| ||| |||  ||||||||||||| |||| |  ||| ||||||||||| | | |||    
T  52397595 taaatattcaataaatagacgctacgccatcaacaaaattcaaacgacatgcatgtataaaaattctcgacagatgcagcagatataaaccatataattc 52397694  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
    ||||| |||||||  || |  |||| ||||| ||| || ||| |||||| ||||||||||||    
T  52397695 aaaagcatacatgttatgacgtcaacatacatcatcatcaaaattctccaaaatcccgacaa 52397756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 17606864 - 17607025
Alignment:
Q  7 atattcaagaaatagacgccacgtcatc-aacaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| |||| ||| |||||||| ||||  ||||| ||||  ||| ||| ||||||||||   |||| |||||||||| | |||||    
T  17606864 atattcaagaaatagacgctacgttatcaaacaaaattcaaattcaacatgcatgcatagaaa-tctcaacagtcgcagcgaatataaaccaaatacttc 17606962  T
Q  102 aaaagtatacatgccataaaatcaag-atacaacattataaaagttctccaaatcccgacaaat 164  Q
     |||| ||||||||||| | |||||| ||||| ||  || |||||||||||| |||||||||||    
T  17606963 -aaagcatacatgccatgatatcaagaatacatcaacatgaaagttctccaagtcccgacaaat 17607025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 20957264 - 20957176
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaac-aacaagcatata-aaaattctcaacagttttagcggatataaacc 92  Q
    |||||||||||||||||||||| |||||| ||||||||||||  || | |||| || ||||||||||||||||  || |||||||||||    
T  20957264 atattcaagaaatagacgccacatcatcatacaaaatccaaaataatatgcatgtataaaattctcaacagttgcagtggatataaacc 20957176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 22837844 - 22837682
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaac---aaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaacc-acacacttc 101  Q
    ||||||||||||||| || |||||||||||   ||||||| |||||||| |||| || |||| ||||||||||   |||||||||||||| | | |||||    
T  22837844 tattcaagaaatagatgctacgtcatcaactcaaaaatccaaaacaacatgcatgtataaaaatctcaacagtcgcagcggatataaaccaaaatacttc 22837745  T
Q  102 aaaagtatacatgccataaaatc-aagatacaacattataaaagttctccaaatcccgacaaat 164  Q
     |||  ||||||||||| | ||| || |||||  || || |||||||||||| |||||||||||    
T  22837744 gaaa-catacatgccatgatatcaaaaatacataatcatgaaagttctccaagtcccgacaaat 22837682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 36358541 - 36358452
Alignment:
Q  8 tattcaagaaatagacgccacgtcatca-acaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||||||| || ||||||||| ||||||| ||||  ||||| ||||  |||||||| |||||||||  ||||||||||||||||    
T  36358541 tattcaagaaatagatgctacgtcatcatacaaaattcaaattcaacatgcatgcataaaaat-ctcaacagtcatagcggatataaacca 36358452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 37236193 - 37236109
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatc-caaacaacaagcatata-aaaattctcaacagttttagcggatata 88  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||||||| |||| || |||| ||||||||||   ||||||||||    
T  37236193 atattcaagaaatagacgctacgtcatcatacaaaatctaaaacaacatgcatgtataaaaatctcaacagtcgcagcggatata 37236109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4482200 - 4482376
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||  ||||||| | |||||||||  ||||||||||||||| | |    
T  4482200 atataaatattcaaaaaatagacgccacatcatcaacaaaatccaaaacaacatgcatgtataaaaaatttcaacagttgcagcggatataaaccatata 4482299  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    ||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||    
T  4482300 ctttaaaagcatacatgccatgaaatcaagatacaacatcataaaagttctccaaatcccgacaaatgggcaaatct 4482376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 17948267 - 17948092
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||  ||||||||||||||||  |||||||||||| || ||||    
T  17948267 atataaatattcaagaaatagacgctacatcatcaacaaaatccaaacaacatgcatatataaaaattctcaacagttgcagcggatataaatcatacac 17948168  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     ||||||||||||||| ||| | ||||| ||||| ||| |||||| |||||||||||||||||||| | |||||||    
T  17948167 ctcaaaagtatacatgacatgagatcaaaatacatcatcataaaaattctccaaatcccgacaaatgggcaaatct 17948092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 9640984 - 9641159
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||  ||||||||||| |||||||||  | |||||||| | || |||     
T  9640984 atataaatattcaagaaatcgacgctacgtcatcaacaaaatccaaacaacaggcatatataaaaattttcaacagttgcatcggatatagatcatacat 9641083  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     || ||||| |||||||||| | ||||| ||||||||| |||||| ||||||||||||||| |||| | |||||||    
T  9641084 ctccaaagtctacatgccatgagatcaaaatacaacatcataaaaattctccaaatcccgataaatgggcaaatct 9641159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 4436818 - 4436985
Alignment:
Q  2 tataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcat------ataaaaattctcaacagttttagcggatataaaccaca 95  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||      |||| ||||||||||||||  | | ||||||||||| |    
T  4436818 tataaatattcaagaaatagacgctacgtcaacaacaaaattcaaacaacaagcatatataaataataattctcaacagttgcaacagatataaaccata 4436917  T
Q  96 cacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaa 163  Q
    ||| ||| || |||||||||||||| ||||  | | ||||| || ||| |||||||||||||||||||    
T  4436918 cacctcacaaatatacatgccataagatcataaaataacatcatgaaaattctccaaatcccgacaaa 4436985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21677737 - 21677619
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| | || ||  |||||| ||||||||||||||  ||||||||||||||| ||||    
T  21677737 atataaatattcaagaaatagacgccacgccatcaacaaaatccaaatatcaggcatatataagaattctcaacagttgcagcggatataaaccatacac 21677638  T
Q  99 ttcaaaagtatacatgccat 118  Q
     || ||||||||||||||||    
T  21677637 ctc-aaagtatacatgccat 21677619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 18081539 - 18081378
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacact 99  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||| | ||||| ||||||||||| ||||  |||||||||| | || |||      
T  18081539 atataaatattcaagaaattgactctacgtcatcaacaaaatccaaacaacatgtatatataaaattctcaatagttgcagcggatatagatcatacatc 18081440  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    ||  | || |||||||||| | ||||| ||||||||| ||| || |||||||||||||||||    
T  18081439 tcctaggtctacatgccatgagatcaaaatacaacatcatataaattctccaaatcccgaca 18081378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 4444218 - 4444385
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcat------ataaaaattctcaacagttttagcggatataaaccac 94  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||      |||| ||||||||||||||  ||| ||||||||| |     
T  4444218 atataaatattcaagaaatagacgctacgtcaacaacaaaattcaaacagcaagcatatataaataataattctcaacagttgcagcagatataaacgat 4444317  T
Q  95 acacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    |||| ||| || |||||||||||||| ||||  | ||||||| || ||| |||| |||||||||||||    
T  4444318 acacctcacaaatatacatgccataatatcataaaacaacatcatgaaaattcttcaaatcccgacaa 4444385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16381845 - 16381977
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatat--aaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||| |||||||||| | ||||| ||||||||||||||||||||| ||||||  |||| || |||||||||  || |||||||||||| ||||    
T  16381845 atataaatatttaagaaatagatgtcacgttatcaacaaaatccaaacaacaggcatatagaaaatttttcaacagttgcagtggatataaaccatacac 16381944  T
Q  99 ttcaaaagtatacatgccataaaatcaagataca 132  Q
    ||| |||||||||||||||| | ||||| |||||    
T  16381945 ttc-aaagtatacatgccatgagatcaaaataca 16381977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 9323295 - 9323134
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc---atataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||| ||||||||||||| | | |||  |  ||    ||||||||||| |||||||||  ||||||||||||||| |||| |||    
T  9323295 aatattcaagaaatagacgctacgtcatcaacaataacaaaatcatgagacatatataaaaattatcaacagttgcagcggatataaaccatacacctca 9323196  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||||||||||||||| | ||||| ||||| ||  |||||| || | |||||||||||||||    
T  9323195 aaagtatacatgccatgagatcaaaatacatcaacataaaaattattcaaatcccgacaaat 9323134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 28717977 - 28718099
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||||| || ||| ||||||||| |||||||| |||  |||||||||||||||||||   || |||||||||||| |||    
T  28717977 atataaatattcaagaaatagacgccatgttatcgacaaaatccaaaacaacatgcatttataaaaattctcaacagtcgcagtggatataaaccataca 28718076  T
Q  98 cttcaaaagtatacatgccataa 120  Q
    | || |||||||||||| |||||    
T  28718077 cctccaaagtatacatgtcataa 28718099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33555606 - 33555727
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa--caaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacac 96  Q
    ||||||||||||||||||||||| |||||||||| |  ||||||| |||||||| |||||||  |||| ||||||||||   ||||| ||||||||| ||    
T  33555606 atataaatattcaagaaatagacaccacgtcatcgattcaaaatcaaaacaacaggcatatataaaaactctcaacagtcgcagcgggtataaaccatac 33555705  T
Q  97 acttcaaaagtatacatgccat 118  Q
    || |||||||||||||||||||    
T  33555706 acctcaaaagtatacatgccat 33555727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 28388401 - 28388516
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||||||| |||||||||||| ||| || | |||  ||||||||||||||| ||||  |||||||||||| || |||| |||    
T  28388401 aatattcaagaaatagacgccacgtcctcaacaaaatccaaaataatatgcatctataaaaattctcaatagttgcagcggatataaatcatacacctca 28388500  T
Q  103 aaagtatacatgccat 118  Q
    | ||||||||||||||    
T  28388501 agagtatacatgccat 28388516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 20587861 - 20587741
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||| ||||||||||||||||||  |||||| |||||||||||| |||||||| |||  ||||||||||||||||||    | || |||||||||| |||    
T  20587861 atatgaatattcaagaaatagacatcacgtcttcaacaaaatccaaaacaacatgcatgtataaaaattctcaacagacgcaacgaatataaaccataca 20587762  T
Q  98 cttcaaaagtatacatgccat 118  Q
    | |||||||||||||| ||||    
T  20587761 cctcaaaagtatacataccat 20587741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 31499177 - 31499343
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa--caaaatccaaac-aacaagcat--ataaaaattctcaacagttttagcggatataaaccaca 95  Q
    |||||||||||||||||||||||| ||  |||||||  |||||||||||  |||| ||||  ||||||||||| ||||||   |||||||||||| || |    
T  31499177 atataaatattcaagaaatagacgtcatatcatcaattcaaaatccaaaataacatgcatgtataaaaattcttaacagtcgcagcggatataaatcata 31499276  T
Q  96 cacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    ||| |||||||||| |||| ||| | ||||| ||| | ||  |||||| ||||| ||||||||||||    
T  31499277 cacctcaaaagtatgcatgtcatgatatcaaaatatatcaacataaaaattctcaaaatcccgacaa 31499343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 39294394 - 39294231
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa-caaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||| |||||  |||  |||||| || ||||| ||  ||||||||||||||||||||   |||||||||||| || |||    
T  39294394 atataaatattcaagaaatagacgctacgtctacaataaaaatcaaatcaacatgcatatataaaaattctcaacagtcgcagcggatataaatcataca 39294295  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
      || |||||||||||||||| | ||||| ||||| ||| ||| || |||| ||| | ||||||    
T  39294294 tatccaaagtatacatgccatgagatcaaaatacatcatcatataaattcttcaagtaccgaca 39294231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 9609182 - 9609341
Alignment:
Q  7 atattcaagaaatagacgccacgtcatc-aacaaaatccaaa--caacaagcatataaaaat-tctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||| || ||||| |||||||||||||  ||||| |||| || |||| ||||||||||   ||||||||||||||| | |||||     
T  9609182 atattcaagaaatagacgcgacatcatcaaacaaaatccaaattcaacatgcatgtataaatatctcaacagtcgcagcggatataaaccatatacttc- 9609280  T
Q  103 aaagtatacatgccataaaat-caagatacaacattataaaagttctccaaatcccgacaa 162  Q
    |||| ||||||||||| | ||  || ||||| ||  ||||||||||||||| |||||||||    
T  9609281 aaagcatacatgccatgatataaaaaatacatcaacataaaagttctccaagtcccgacaa 9609341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 9836754 - 9836913
Alignment:
Q  7 atattcaagaaatagacgccacgtcatc-aacaaaatccaaa--caacaagcatataaaaat-tctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||| || ||||| |||||||||||||  ||||| |||| || |||| ||||||||||   ||||||||||||||| | |||||     
T  9836754 atattcaagaaatagacgcgacatcatcaaacaaaatccaaattcaacatgcatgtataaatatctcaacagtcgcagcggatataaaccatatacttc- 9836852  T
Q  103 aaagtatacatgccataaaat-caagatacaacattataaaagttctccaaatcccgacaa 162  Q
    |||| ||||||||||| | ||  || ||||| ||  ||||||||||||||| |||||||||    
T  9836853 aaagcatacatgccatgatataaaaaatacatcaacataaaagttctccaagtcccgacaa 9836913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 48345526 - 48345686
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaa-caaaatccaaa-caacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| ||| |||||| ||||||||||| ||||| |||| || |||| ||||||||||   ||||||||||||||| | |||||||    
T  48345526 atattcaagaaatagacgctacgccatcaaacaaaatccaaaacaacatgcatgtataaaaatctcaacagtcgcagcggatataaaccatatacttcaa 48345625  T
Q  104 aagtatacatgccataaaatcaaga-tacaacattataaaagttctccaaatcccgacaaat 164  Q
    | | ||||||| ||| | ||||| | |||| ||   |||||||||||||| |||||||||||    
T  48345626 a-gcatacatgtcatgatatcaaaaatacatcaacttaaaagttctccaagtcccgacaaat 48345686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 12245631 - 12245786
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatataaaaa--ttctcaacagttttagcggatataaaccacacacttcaaaa 105  Q
    ||||||| |||||||||  ||||| ||||||||   ||||||||| ||||||| |||  |||||||||||   |||||||||||| || |||  || |||    
T  12245631 tattcaataaatagacgttacgtcttcaacaaatatcaaacaacatgcatatataaaatttctcaacagtcgcagcggatataaatcatacatctccaaa 12245730  T
Q  106 gtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
     |||||||| ||||| ||||| ||||| ||| ||| ||  ||||||||||||||||    
T  12245731 atatacatgtcataagatcaatatacatcatcatataaaatctccaaatcccgaca 12245786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 9058861 - 9058742
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatca-acaaaatccaaa-caacaagcatata-aaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||| ||||| ||||||||||||| ||||| ||| |||||||||||| ||||| |||| || |||||||||||||||   | ||||||||||||| | |    
T  9058861 atatatatatttaagaaatagacgctacgtcttcatacaaaatccaaaacaacatgcatgtataaaattctcaacagtcgcatcggatataaaccatata 9058762  T
Q  98 cttcaaaagtatacatgccat 118  Q
    ||||||||  |||||||||||    
T  9058761 cttcaaaa-catacatgccat 9058742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 14279138 - 14279038
Alignment:
Q  7 atattcaagaaatagacgccacgtca-tcaacaaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| |||||| | |||||||||| |||||||| |||| || |||| ||||||||||   ||||||||||||||| | |||||||    
T  14279138 atattcaagaaatagacgctacgtcattaaacaaaatccaaaacaacatgcatgtacaaaaatctcaacagtcgcagcggatataaaccatatacttcaa 14279039  T
Q  104 a 104  Q
    |    
T  14279038 a 14279038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 14938640 - 14938760
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaa-tccaaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||| |||||||||  | |||||||||||||||| || |||||||| |||  ||||||||||| |||||||   |||| ||| | | || |||    
T  14938640 atataaatatttaagaaatagtagtcacgtcatcaacaaaattcaaaacaacatgcatgtataaaaattcccaacagtcgcagcgaataaagatcataca 14938739  T
Q  98 cttcaaaagtatacatgccat 118  Q
      |||||||||||||||||||    
T  14938740 tctcaaaagtatacatgccat 14938760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15366233 - 15366353
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaa-tccaaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||| |||||||||  | |||||||||||||||| || |||||||| |||  ||||||||||| |||||||   |||| ||| | | || |||    
T  15366233 atataaatatttaagaaatagtagtcacgtcatcaacaaaattcaaaacaacatgcatgtataaaaattcccaacagtcgcagcgaataaagatcataca 15366332  T
Q  98 cttcaaaagtatacatgccat 118  Q
      |||||||||||||||||||    
T  15366333 tctcaaaagtatacatgccat 15366353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 18921295 - 18921191
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatataaaaattctcaacagttttagcggatataaaccacacactt 100  Q
    ||||||||||||||||||||||||||||| || |||||| || ||           |||||||||||||||||||   ||||||||||||||| |||| |    
T  18921295 atataaatattcaagaaatagacgccacgccaacaacaacatgca---------tgtataaaaattctcaacagtcgcagcggatataaaccatacacct 18921205  T
Q  101 caaaagtatacatg 114  Q
    ||||| ||||||||    
T  18921204 caaaattatacatg 18921191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 17922977 - 17923081
Alignment:
Q  57 tataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcc 156  Q
    |||||||||| ||||||||   |||||||||||| || |||  || |||||||||||| ||| | ||||| ||||| ||| ||| || ||||||||||||    
T  17922977 tataaaaattttcaacagtcgcagcggatataaatcatacatctctaaagtatacatgtcatgagatcaaaatacatcatcatataaattctccaaatcc 17923076  T
Q  157 cgaca 161  Q
     ||||    
T  17923077 tgaca 17923081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 34243375 - 34243261
Alignment:
Q  7 atattcaagaaatagacgccacgtcatc-aacaaaatccaaa--caacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||| |||||||||||||| |||||||| |||||||||||||  ||||| |||| || |||| ||||||||||   ||| ||||||||||| | |||||     
T  34243375 atatgcaagaaatagacgctacgtcatcaaacaaaatccaaattcaacatgcatgtataaaaatctcaacagtcgcagcagatataaaccatatacttc- 34243277  T
Q  103 aaagtatacatgccat 118  Q
    |||||| |||||||||    
T  34243276 aaagtacacatgccat 34243261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 3194257 - 3194185
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcat--ataaaaattctcaacagt 75  Q
    |||||||||| |||||||||| ||||  ||||||||   ||||||||| ||||  ||||||||||||||||||    
T  3194257 aaatattcaaaaaatagacgctacgttttcaacaaatatcaaacaacatgcatttataaaaattctcaacagt 3194185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 5617394 - 5617555
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaa-caaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| || ||||||| |||||| ||||  ||||| ||||  |||||||| |||||||||   | ||||||||||||| | |||||    
T  5617394 atattcaagaaatagacgctacatcatcaaacaaaattcaaattcaacatgcatgcataaaaat-ctcaacagtcgcaacggatataaaccaaatacttc 5617492  T
Q  102 aaaagtatacatgccataaaatcaaga-tacaacattataaaagttctccaaatcccgacaaat 164  Q
     || | ||||||| ||| | ||||| | |||| ||  ||||||||||||||| |||||||||||    
T  5617493 gaa-gcatacatgtcatgatatcaaaaatacatcaacataaaagttctccaagtcccgacaaat 5617555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 10863154 - 10863065
Alignment:
Q  8 tattcaagaaatagacgccacgtcatca-acaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaacca 93  Q
    |||||||||||||||||| ||||||||| ||||||| | ||  ||||| ||||  ||||||| |||||||||||  |||||||||||||||    
T  10863154 tattcaagaaatagacgctacgtcatcatacaaaattccaattcaacatgcatgcataaaaa-tctcaacagttgcagcggatataaacca 10863065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 18366253 - 18366201
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcat 57  Q
    |||||||||||||||||||| |||||| |||| ||||  ||||||||| ||||    
T  18366253 aaatattcaagaaatagacgtcacgtcttcaataaaactcaaacaacatgcat 18366201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 15006871 - 15006696
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||  |||||||| |||||||  ||||||||||||||| ||||    
T  15006871 atataaatattcaagaaatagacgctacgtcatcaacaaaatccaaacaacaggcatatataaaaattcttaacagttgcagcggatataaaccatacac 15006772  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     | |||||| |||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||||| | |||||||    
T  15006771 cttaaaagtctacatgccatgagatcaaaatacaacatcataaaaattctcgaaatcccgacaaatgggcaaatct 15006696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 34964864 - 34965029
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatat--aaaaattctcaacagttttagcggatataaaccacacac 98  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||  |||||||||||||| ||  ||| ||||||||||| ||||    
T  34964864 atataaatattcaaaaaatagacgcctcgtcatcaacaaagtccaaacaacaggcatatttaaaaattctcaacatttgcagcagatataaaccatacac 34964963  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
     | ||||||||||||||||| | ||||| ||||| ||| |||||| ||||| ||||||||||||||    
T  34964964 ctaaaaagtatacatgccatgagatcaaaatacatcatcataaaaattctctaaatcccgacaaat 34965029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 12311239 - 12311080
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||| |||  |||||||||||||||||||   ||||||||||||||| | ||||| |    
T  12311239 atattcaagaaatagacgctacgttatcaacaaaatccaaagcaacatgcatgtataaaaattctcaacagtcgcagcggatataaaccatatacttc-a 12311141  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||| ||||||||||| | ||||| |||||  || ||||| ||||||||| |||||||||||    
T  12311140 aagcatacatgccatgatatcaaaatacataatcataaatgttctccaagtcccgacaaat 12311080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 29603507 - 29603671
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||  |||||||||||||||||||  |||||||||||||||| |||    
T  29603507 atataaatattcaagaaatagacgtcacgtcatcaaaaaaatccaaaacaacatgcatgtataaaaattctcaacagtcgtagcggatataaaccataca 29603606  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
     || || || ||||||| ||| | |||||  ||   || ||||||| ||||||||||||||||||    
T  29603607 atttaagagcatacatgtcatgatatcaaagtatctcaatataaaaattctccaaatcccgacaa 29603671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 19670472 - 19670586
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatat--aaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||| ||||||  |||||||||||||||||  ||||||||||||||| |||| ||     
T  19670472 aatattcaagaaatagacgccagatcatcaacaaaatccaaaacaacatgcatatataaaaattctcaacagttgcagcggatataaaccatacacctcc 19670571  T
Q  103 aaagtatacatgcca 117  Q
    |||| ||||||||||    
T  19670572 aaagcatacatgcca 19670586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 22468314 - 22468174
Alignment:
Q  36 acaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaa 133  Q
    ||||||||||||||||| |||||||  ||||||||||||||||  |||||||||| | ||  ||  || ||||| |||||| ||| | ||||| ||||||    
T  22468314 acaaaatccaaacaacaggcatatataaaaattctcaacagttgcagcggatatagatcatgcatctctaaagtctacatggcatgagatcaaaatacaa 22468215  T
Q  134 cattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    ||| |||||| |||||||||||||||||||| |||||||||    
T  22468214 catcataaaaattctccaaatcccgacaaatggacaaatct 22468174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 31469749 - 31469662
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaa 90  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||| |||  ||||||||||||    
T  31469749 aatattcaagaaatagacgccacgtcatcaacaaaatccaaaacaacatgcatgtataaaaattctcaacggttgcagcggatataaa 31469662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 29163155 - 29163023
Alignment:
Q  3 ataaatattcaagaaatagacgccacgtcatcaac-aaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacact 99  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||| ||  ||||||||||||||||||||   |||||||||| | || |||      
T  29163155 ataaatattcaagaaatagacgctacatcatcaacaaaaatccaaacaacatgcatatataaaaattctcaacagtcacagcggatatagatcatacatc 29163056  T
Q  100 tcaaaagtatacatgccataaaatcaagataca 132  Q
    || |||||||||||| ||| | ||||| |||||    
T  29163055 tccaaagtatacatgtcatgagatcaaaataca 29163023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19852232 - 19852327
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagca--tataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | |  ||||||||||||||||| ||  |||||||||||||||    
T  19852232 atataaatatttaagaaatagacgccatgtcatcaacaaaatccaaaccaacatgaatgtataaaaattctcaacaattgcagcggatataaacca 19852327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 22595902 - 22595736
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||  |||||||| |||||||||||   ||| |||||||| || |||    
T  22595902 atataaatattcaagaaatagacgctacgtcttcaacaaaaactaaatcaacatgcatatataaaatttctcaacagtcgcagcagatataaatcataca 22595803  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
      || |||||||||||| |||   ||||| ||||| ||| ||| || ||||||||| ||||||||||    
T  22595802 tctccaaagtatacatgtcatgtgatcaaaatacatcatcatataaattctccaaaccccgacaaat 22595736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 22846055 - 22846219
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatc-aacaaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||| |||| |||||||| || ||||||| |||||||| |||| || ||||||||||| |||   ||||||||||||||| | |    
T  22846055 atataaatattcaagaaataaacgctacgtcatcaaaaaaaatccaaaacaacatgcatgtataaaattctcaatagtcgcagcggatataaaccatata 22846154  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | ||  ||| ||||||| ||| | | ||| |||||| || |||||||||||| || || ||||||||    
T  22846155 catc--aagcatacatgtcatgataacaaaatacaatatcataaaagttctcaaagtctcgacaaat 22846219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25649187 - 25649348
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| || | ||||||||||| ||||| || || ||||  |||||||| ||||| |||   |||||||| |||||| | |    
T  25649187 atataaatattcaagaaatagacgtcatgccatcaacaaaaaccaaaacaccatgcatgcataaaaat-ctcaatagtcgcagcggatacaaaccatata 25649285  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    ||| ||| | ||||||  ||||| ||||| ||||| ||  ||||||||||||||| ||||||||    
T  25649286 ctttaaa-gcatacatatcataatatcaaaatacatcaacataaaagttctccaagtcccgaca 25649348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 941273 - 941179
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatca-ac-aaaatccaaacaacaagcatataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||||||||| || |||| ||||||||| || |||||| |||||||  |||| || |||||||||||||    |||||||||||||||    
T  941273 atataaatattcaagaattatacgctacgtcatcatacaaaaatcaaaacaacgtgcatgtataaattctcaacagccgcagcggatataaacca 941179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 17858605 - 17858476
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||| | || |||||  |||||||   ||||||||| ||||  ||||||||||||||||||   |||||||||||| || |||   |     
T  17858605 aaatattcaagaaatacatgctacgtctgcaacaaatatcaaacaacatgcatttataaaaattctcaacagtcgcagcggatataaatcatacatcacc 17858506  T
Q  103 aaagtatacatgccataaaatcaagataca 132  Q
    || ||||||||| ||||| ||||| |||||    
T  17858505 aaggtatacatgtcataagatcaacataca 17858476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 23218920 - 23219005
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatat--aaaaattctcaacagttttagcggatataaa 90  Q
    |||||||||||||||||| |||||  ||| |||| ||||| ||||| ||||||  ||||||||||||||||   ||||||||||||    
T  23218920 tattcaagaaatagacgctacgtctacaataaaaaccaaatcaacatgcatatagaaaaattctcaacagtcgcagcggatataaa 23219005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 6092467 - 6092500
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaa 40  Q
    ||||||||||||||||||| ||||||||||||||    
T  6092467 atattcaagaaatagacgctacgtcatcaacaaa 6092500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 6092385 - 6092559
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacact 99  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| | || |||      
T  6092385 atataaatattcaagaaatagacgctacgtcatcaacaaaatccaaacaacaagcatatataaaattctcaacagttgcagcggatatagatcatacatc 6092484  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    || ||||| |||||| | ||| ||||| ||||||||| |||||| |||||||||||||||||||| | |||||||    
T  6092485 tccaaagtctacatgtcgtaagatcaaaatacaacatcataaaaattctccaaatcccgacaaatgggcaaatct 6092559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 24271983 - 24272146
Alignment:
Q  4 taaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcat--ataaaaattctcaacagttttagcggatataaaccacacactt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||| ||||  ||||||||||||||||||   || ||||||||| || |||| |    
T  24271983 taaatattcaagaaatagacgccacgtcatcaacgaaatccaaaataacatgcatgtataaaaattctcaacagtcgcagtggatataaatcatacacct 24272082  T
Q  101 caaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | |||||||| ||| ||| | ||||| ||||| ||| |||||| ||||||||||||||||||||    
T  24272083 ctaaagtatatatgtcatgatatcaaaatacatcatcataaaaattctccaaatcccgacaaat 24272146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30995222 - 30995105
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa--caaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacac 96  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||  ||||||  |||||||||||||||   ||||||||||||||| ||    
T  30995222 atataaatattcaagaaatagacgccacgtcatcaattcaaaatccaaataacagacatatataaaaattctcaacagtcgcagcggatataaaccatac 30995123  T
Q  97 acttcaaaagtatacatg 114  Q
    || |||||||||||||||    
T  30995122 acctcaaaagtatacatg 30995105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 43640284 - 43640446
Alignment:
Q  3 ataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacact 99  Q
    ||||||||||||||||||||||  ||||||||||||||| || |||||||| |||  ||||||||||  |||||||   ||||||||||||||| | |||    
T  43640284 ataaatattcaagaaatagacgatacgtcatcaacaaaacccaaaacaacatgcatgtataaaaatttccaacagtcgcagcggatataaaccatatact 43640383  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaa 163  Q
    || |||| ||||||||||| | ||||| |||||  || |||||| ||||| || |||| |||||    
T  43640384 tc-aaagcatacatgccatgatatcaaaatacataatcataaaaattctctaagtccctacaaa 43640446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 25132242 - 25132326
Alignment:
Q  89 aaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    ||||| |||||||||| ||||||||||||| | ||||| ||||||||| |||||| |||||||||||||| ||||| | |||||||    
T  25132242 aaccatacacttcaaa-gtatacatgccatgagatcaaaatacaacatcataaaaattctccaaatcccgtcaaatgggcaaatct 25132326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 19648022 - 19648137
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatca-acaaaa-tccaaacaa-caagcatataaaaattctcaacagttttagcgga-tataaaccacacacttc 101  Q
    |||||||||||||||||||| || |||||| |||||| ||||||||| || ||||||| ||  ||||||||||   |||||| ||||||||| |||||||    
T  19648022 aatattcaagaaatagacgctacatcatcatacaaaattccaaacaatcatgcatatataatatctcaacagtcgcagcggattataaaccatacacttc 19648121  T
Q  102 aaaagtatacatgccat 118  Q
    |||| ||||||||||||    
T  19648122 aaaa-tatacatgccat 19648137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24839357 - 24839435
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatc--aacaaaatccaaacaacaagc--atataaaaattctcaacagt 75  Q
    ||||||| ||||||||||||||||| ||||| ||  | |||||| ||||||||| ||  ||||||||||||||||||||    
T  24839357 atataaaaattcaagaaatagacgctacgtcttcatatcaaaattcaaacaacatgcatatataaaaattctcaacagt 24839435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 23823730 - 23823642
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||||||| || |||||||||||||||| ||||  ||||| ||||  ||||||| ||||||||||   |||||||||||||||    
T  23823730 tattcaagaaatagatgctacgtcatcaacaaaattcaaattcaacatgcatgcataaaaa-tctcaacagtcgcagcggatataaacca 23823642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 23825674 - 23825586
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||||||| || |||||||||||||||| ||||  ||||| ||||  ||||||| ||||||||||   |||||||||||||||    
T  23825674 tattcaagaaatagatgctacgtcatcaacaaaattcaaattcaacatgcatgcataaaaa-tctcaacagtcgcagcggatataaacca 23825586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 22637264 - 22637427
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacact 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||  ||||||||||||||| ||||     
T  22637264 atataaatattgaagaaatagacgccacgtcatcaacaaaatccaaacaacaggcatatataaatttctcaacagttgcagcggatataaaccatacacc 22637363  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    || |||||||||||| ||| | ||||| ||||| ||| |||||| ||||||||||||||||||||    
T  22637364 tc-aaagtatacatgtcatgagatcaaaatacatcatcataaaaattctccaaatcccgacaaat 22637427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 43429775 - 43429604
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||||| ||||||||||| | ||| ||||| |||||||  |||||| |||||||||  ||||||||||||||| |||| |||    
T  43429775 aatattcaagaaatagacgccacgacatcaacaaaaacaaaatcaacaggcatatataaaaattttcaacagttgcagcggatataaaccatacacctca 43429676  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    |||||||||||||||| | ||||| ||||| ||| |||||| ||||||||||||| |||||| | |||||||    
T  43429675 aaagtatacatgccatgagatcaaaatacatcatcataaaaattctccaaatcccaacaaatgggcaaatct 43429604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 6817866 - 6817696
Alignment:
Q  10 ttcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttcaaaag 106  Q
    |||||||||||||||| || |||||||||||| ||||| ||||| |||||||  |||||||||||||||   |||||||||||| || |||| |||||||    
T  6817866 ttcaagaaatagacgctacatcatcaacaaaaaccaaatcaacatgcatatataaaaattctcaacagtcgcagcggatataaatcatacacctcaaaag 6817767  T
Q  107 tatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatcttca 177  Q
    |||||||||||| | ||||| ||||| ||| ||| || |||||||||||||||||||| | ||||||||||    
T  6817766 tatacatgccatgagatcaaaatacatcatcatataaattctccaaatcccgacaaatgggcaaatcttca 6817696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31416457 - 31416339
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||  |||| |||||||||| ||||    
T  31416457 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaggcatatataaaaattctcaacagttgcagcgaatataaaccatacac 31416358  T
Q  99 ttcaaaagtatacatgccat 118  Q
     || |||||||| |||||||    
T  31416357 ctc-aaagtatatatgccat 31416339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 21168946 - 21168780
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||  |||| | ||  |||||||||||||||||||  |||||||||||| || |||    
T  21168946 atataattattcaagaaatagacgtcacgtcatcaacaaaatccaaaataacatgtatgtataaaaattctcaacagttgcagcggatataaatcataca 21168847  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | |||| |||||||||| ||| | ||||  ||||| ||| |||||| ||||||||||||||||||||    
T  21168846 catcaatagtatacatgtcatgatatcacaatacatcatcataaaaattctccaaatcccgacaaat 21168780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 4164486 - 4164321
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||  |||||||||||||||||  |  ||||||||||||||| | |    
T  4164486 atataaatattcaagaaatagacgtcacgtcatcaacaaaatccaaaacaacatgcatgtataaaaattctcaacaactacagcggatataaaccataaa 4164387  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
     |||||||||||||||||||| | || || ||||| ||| || ||| |||||| ||||||||||||    
T  4164386 attcaaaagtatacatgccatgatattaaaatacatcatcattaaaattctccaaaatcccgacaa 4164321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 17320818 - 17320644
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||  |||||||||| ||| |  |||||||||| | ||  ||     
T  17320818 atataaatattcaggaaatagacgccacatcatcaacaaaatccaaacaacaggcatatataaaaattctca-cagctgcagcggatatagatcattcat 17320720  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     || ||||| |||||||||| | | ||| ||||||||| |||||| |||||||||||||||||||| | |||||||    
T  17320719 ctctaaagtctacatgccatgagaccaaaatacaacatcataaaaattctccaaatcccgacaaatgggcaaatct 17320644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 41659547 - 41659713
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaa-caagcatataa--aaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||  | || |||| |||  |||||||||||| ||  ||||||||||||||| | |    
T  41659547 atataaatattcaagaaatagacatcacgtcatcaacaaaatccaaaatagcatgcatgtaataaaattctcaacaattgcagcggatataaaccataaa 41659646  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | ||||||||||||||  ||| | ||||| ||||| ||| |||||| ||||||||||||||||||||    
T  41659647 cctcaaaagtatacatttcatgatatcaaaatacatcatcataaaaattctccaaatcccgacaaat 41659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 10902420 - 10902574
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatataaaaattctcaacagttttagcggatataaaccacacacttcaaaag 106  Q
    ||||||||||||||| |  ||||| ||||||||| | ||| ||||| |||||||||||||||||||||||  ||||||||||||  | |||| |||||||    
T  10902420 tattcaagaaatagatggtacgtcttcaacaaaaactaaatcaacatgcatataaaaattctcaacagttgcagcggatataaattatacacctcaaaag 10902519  T
Q  107 tatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    |||||||||||| | ||||| ||||| ||| ||| || |||||||||||||||||    
T  10902520 tatacatgccatgagatcaaaatacatcatcatataaattctccaaatcccgaca 10902574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 4147935 - 4147769
Alignment:
Q  2 tataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagc----atataaaaattctcaacagttttagcggatataaaccacac 96  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    ||| |||||||||||||| ||  ||||||||||||||| |     
T  4147935 tataaatattcaagaaatagacgccacgtcatcaacaaaatccaaaacaacatgcatgtataaaaaaattctcaacaattgcagcggatataaaccataa 4147836  T
Q  97 acttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
    | |||||||||||||||| ||| | ||||| |||||  || || ||| |||||| ||||||||||||    
T  4147835 aattcaaaagtatacatgtcatgatatcaaaatacattatcatcaaaattctccgaaatcccgacaa 4147769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 12950501 - 12950668
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa--caaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccaca 95  Q
    ||||||||||||||||||||||||| ||||||||||  ||||| | ||| ||||| ||||  ||||||||||||||||||   |||||||||||| || |    
T  12950501 atataaatattcaagaaatagacgctacgtcatcaattcaaaaacaaaatcaacatgcatgtataaaaattctcaacagtcgcagcggatataaatcata 12950600  T
Q  96 cacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    | || |||||||||||||||||| | ||||| ||||| ||| ||| || ||||||||||||||| ||||    
T  12950601 ccct-caaaagtatacatgccatgagatcaaaatacatcatcatataaattctccaaatcccgataaat 12950668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 18968011 - 18968172
Alignment:
Q  3 ataaatattcaagaaatagacgccacgtcatcaacaaaa-tccaaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacact 99  Q
    |||||||||||||||||||||| |||||||||||||||| || |||||||| |||  ||||||||||| |||||||   |||||||||||| || ||||     
T  18968011 ataaatattcaagaaatagacgtcacgtcatcaacaaaattcaaaacaacacgcatgtataaaaattc-caacagtcgcagcggatataaagcatacacc 18968109  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    | |||| |||||||| ||| | ||||| |||   || ||||||| ||||||||||||||||||    
T  18968110 taaaaaatatacatgtcatgatatcaaaatatctcaatataaaaattctccaaatcccgacaa 18968172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 33371605 - 33371440
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||| | |||| || |||||||||| |||||||| |||  |||||||||||||||||||   ||||||||||||||| | |    
T  33371605 atataaatattcaagaaatagacactacgtaattaacaaaatccaaaacaacatgcatgtataaaaattctcaacagtcgcagcggatataaaccatata 33371506  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||| |||| |||| || ||| | ||||| |||||  || ||||||||||| ||| |||||||||||    
T  33371505 cttc-aaagcatacctgtcatgatatcaaaatacataatcataaaagttcttcaagtcccgacaaat 33371440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8602237 - 8602400
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaaca-acaagc--atataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||  |||||||| |||||||||||   |||||||||||  || |||    
T  8602237 atataaatattcaagaaatagacgctacgtcttcaacaaaagccaaacatacatgcatatataaaatttctcaacagtcgcagcggatataagtcataca 8602336  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
      || ||| |||||||| ||||| ||||| ||||| ||| ||| || |||||||| ||||||||    
T  8602337 tctccaaaatatacatgtcataagatcaaaatacatcatcatataaattctccaagtcccgaca 8602400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 15552134 - 15551962
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||||  ||||| ||||||||| ||||| ||||| |||||||  |||||||||||||||   ||| |||||||| || |||  ||    
T  15552134 aaatattcaagaaatagacgttacgtcttcaacaaaaaccaaatcaacatgcatatataaaaattctcaacagtcgcagcagatataaatcatacatctc 15552035  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     ||| |||||||| ||| | ||||| ||||| ||| ||| || ||||| |||||||||||||| | |||||||    
T  15552034 caaaatatacatgtcatgagatcaatatacatcatcatataaattctctaaatcccgacaaatgggcaaatct 15551962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 17390937 - 17391099
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatataaaaatt---ctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||| ||||| |||||||| | ||||||||| ||||||| |||||   |||||||||   |||||||||||| || |||    
T  17390937 atataaatattcaagaaatagacgctacgtcttcaacaaatttcaaacaacatgcatatataaattttgctcaacagtcgcagcggatataaatcataca 17391036  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
      || ||| |||||||| ||||||||||| ||| | || |||| ||  |||| |||||||||||    
T  17391037 tctccaaa-tatacatgtcataaaatcaatatatatcaatatataaaatctctaaatcccgaca 17391099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 6230896 - 6230735
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    |||||||||||||||||||| | |||||||||| |||||| |||||||| |||  ||||||||| |||||||||   |||| |||||||||| ||||  |    
T  6230896 aaatattcaagaaatagacgtcgcgtcatcaaccaaatccaaaacaacatgcatgtataaaaatcctcaacagtcgcagcgaatataaaccatacaccgc 6230797  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
    | |||||||||||  || | ||||| ||||| ||| || ||| |||||| ||||||||||||    
T  6230796 agaagtatacatgtaatgatatcaaaatacatcatcatcaaaattctccaaaatcccgacaa 6230735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 14820066 - 14819972
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcca-aacaacaagcatata-aaaattctcaacagttttagcggatataaacca 93  Q
    |||||||||||||||||||||| |  |||||||||||||| |||| ||||||| |||| || ||||||||||||||||  |||||||||||||||    
T  14820066 atataaatattcaagaaatagaagttacgtcatcaacaaagtccagaacaacatgcatgtataaaattctcaacagttgcagcggatataaacca 14819972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 5230848 - 5230688
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| ||||| ||||||||| | ||| ||||| |||||||  ||||||||||| ||||  |||| ||||||| || |||  || |    
T  5230848 atattcaagaaatagacgctacgtcttcaacaaaaacaaaatcaacatgcatatataaaaattctcaatagttgcagcgtatataaatcatacatctcca 5230749  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||  ||||||| ||||| ||||| ||||| ||| ||| ||  |||||||||||||||||||    
T  5230748 aaacatacatgtcataagatcaatatacatcatcatataaaatctccaaatcccgacaaat 5230688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 37919064 - 37918959
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatc 155  Q
    ||||||||||||||||||||   |||||||| ||| || |||  || ||| |||||||| ||| | ||||| ||||| ||| |||||| |||||||| ||    
T  37919064 atataaaaattctcaacagtcgcagcggatagaaatcatacatctccaaaatatacatgtcatgagatcaaaatacatcatcataaaaattctccaagtc 37918965  T
Q  156 ccgaca 161  Q
    ||||||    
T  37918964 ccgaca 37918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 15988468 - 15988551
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatata 88  Q
    |||||||||||||||||| ||||| |||| |||| ||||| ||||| ||  ||||||||||||||||||||   ||||||||||    
T  15988468 tattcaagaaatagacgctacgtcttcaataaaaaccaaatcaacatgcatatataaaaattctcaacagtcgcagcggatata 15988551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 17761038 - 17760870
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||| ||||| ||||| ||||| ||| | |||  |||| |||||||  ||||||||||||| |   |||||||||| | || |    ||    
T  17761038 aaatattcaagaaatggacgctacgtcttcaacgaaaacaaaattaacatgcatatataaaaattctcaacattcgcagcggatatagatcata----tc 17760943  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     |||||||||||| ||||| ||||| ||||| ||| ||| || ||||||||||| |||||||| | |||||||    
T  17760942 caaagtatacatgtcataagatcaaaatacatcatcatataaattctccaaatctcgacaaattggcaaatct 17760870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 19062358 - 19062190
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||| ||||| ||||| ||||| ||| | |||  |||| |||||||  ||||||||||||| |   |||||||||| | || |    ||    
T  19062358 aaatattcaagaaatggacgctacgtcttcaacgaaaacaaaattaacatgcatatataaaaattctcaacattcgcagcggatatagatcata----tc 19062263  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     |||||||||||| ||||| ||||| ||||| ||| ||| || ||||||||||| |||||||| | |||||||    
T  19062262 caaagtatacatgtcataagatcaaaatacatcatcatataaattctccaaatctcgacaaattggcaaatct 19062190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 325344 - 325274
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatcc-aaacaacaagcatataaaaattctcaacagt 75  Q
    ||||||||||||||||| | ||||||||| ||||||||| |||||||| |||| || ||| ||||||||||    
T  325344 atattcaagaaatagacactacgtcatcatacaaaatccaaaacaacatgcatgtataaaatctcaacagt 325274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 14182631 - 14182539
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaac-aaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaa 90  Q
    |||| |||||||||||||||||||| ||||| ||||| |||||| || ||||| ||  ||||||||||| ||||| ||   ||||||||||||    
T  14182631 atatgaatattcaagaaatagacgctacgtcttcaacaaaaatcaaatcaacatgcatatataaaaattttcaacggtcgcagcggatataaa 14182539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38378410 - 38378358
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaac-aaaatccaaacaaca 52  Q
    ||||||||||| ||||||||||||  || |||||||| |||||||||||||||    
T  38378410 atataaatatttaagaaatagacgttacatcatcaacaaaaatccaaacaaca 38378358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 47470576 - 47470409
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||  |||||||||||||||   ||||||||||||||| |||    
T  47470576 atataaatattcaagaaatagacgccacgtcatcaacaaaaaccaaatcaacatgcatatataaaaattctcaacagtcgcagcggatataaaccataca 47470477  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattat-aaaagttctccaaatcccgacaaat 164  Q
    | ||||||||||||||| ||| | ||||| ||||| ||| || |||| ||||||||||| ||||||||    
T  47470476 cctcaaaagtatacatgtcatgatatcaaaatacatcatcataaaaaattctccaaatctcgacaaat 47470409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 19557265 - 19557421
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacact 99  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| | ||||||||||||| ||  ||||||||||||||| ||||     
T  19557265 atataaatattcaagaaatagacgccatgtcatcaacaaaatctaaacaacaggcatacataaaattctcaacaattgcagcggatataaaccatacacc 19557364  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatccc 157  Q
    || ||||||||||||| || | ||||| ||||| ||| |||||| |||||||||||||    
T  19557365 tc-aaagtatacatgctatgagatcaaaatacatcatcataaaaattctccaaatccc 19557421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 13596261 - 13596086
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||  ||||||||||| |||||||||  | |||||||| | || |||     
T  13596261 atataaatattcaagaaatcgacgctacgtcatcaacaaaatccaaacaacaggcatatataaaaattttcaacagttgcatcggatatagatcatacat 13596162  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
     || ||||| |||||||||| | ||||| ||||||||| |||||| ||||||||||||||| |||| | |||||||    
T  13596161 ctccaaagtctacatgccatgagatcaaaatacaacatcataaaaattctccaaatcccgataaatgggcaaatct 13596086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 50224394 - 50224222
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||||||||||| ||||| | | | ||| || |||||  ||||| |||||||||||||||  ||||||||||||| | |||| ||    
T  50224394 aaatattcaagaaatagacgccacgtcgtcaactataacgaaatcatcaagcatatatataaattctcaacagttgcagcggatataaacaatacacctc 50224295  T
Q  102 aaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaatct 174  Q
    |||||||||||| |||| | ||||| ||||| ||  |||||| |||||||||||||||||||| |||||||||    
T  50224294 aaaagtatacataccatgagatcaaaatacatcaacataaaaattctccaaatcccgacaaatggacaaatct 50224222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 10239682 - 10239519
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacac 98  Q
    |||||||||| ||||||||||||||||| ||||||||||  | |||| ||||||||||||  ||||||||  || |||  ||||||||||||||| ||||    
T  10239682 atataaatatccaagaaatagacgccacatcatcaacaatgttcaaataacaagcatatataaaaattctataccgttgcagcggatataaaccatacac 10239583  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    |||||||||||||||||||| |  |||| ||||| ||  |||||| |||| ||||| |||||||    
T  10239582 ttcaaaagtatacatgccatgaggtcaaaatacatcaacataaaaattcttcaaattccgacaa 10239519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 13449250 - 13449139
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||  ||||||||||||| | |||| |||    
T  13449250 aatattcaagaaatagacgtcacgtcatcaacaaaatccaaaacaacatgcatgtataaaaattctcaacagttgcagcggatataaactatacacctca 13449151  T
Q  103 aaagtatacatg 114  Q
    ||||||||||||    
T  13449150 aaagtatacatg 13449139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5407104 - 5407223
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||| |||||||| |||  |||||| |||||||||||||  ||||||||||||||| |||    
T  5407104 atataaatattcaagtaatagacgccacgtcttcaataaaatccaaaacaacatgcatgtataaatattctcaacagttgcagcggatataaaccataca 5407203  T
Q  98 cttcaaaagtatacatgccat 118  Q
    | || ||||||||||||||||    
T  5407204 cctc-aaagtatacatgccat 5407223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 41919489 - 41919325
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacact 99  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||| ||||  || ||||||| | || |||      
T  41919489 atataaatattcaagaaatagatgctacgtcatcaacaaaatccaaacaacaggcatatataaaattctcaaaagttgcagtggatatagatcatacatc 41919390  T
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    || ||| |||| ||| ||||| ||||| ||||| ||| ||| ||  |||  ||||||||||||||    
T  41919389 tccaaaatatagatgtcataagatcaatatacatcatcatataaaatcttaaaatcccgacaaat 41919325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 18241429 - 18241312
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||| ||||||||||||||| || |||||||||||||| ||| ||||| ||||  |||||||||||||||||||  |||||||||||| || | |    
T  18241429 atataaatagtcaagaaatagacgctacatcatcaacaaaatcgaaaacaacatgcatgtataaaaattctcaacagttgcagcggatataaatcatata 18241330  T
Q  98 cttcaaaagtatacatgc 115  Q
     |||||||| ||||||||    
T  18241329 attcaaaagcatacatgc 18241312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 19624273 - 19624111
Alignment:
Q  3 ataaatattcaagaaatagacgccacgtcat--caacaaaatccaaacaacaagcatata-aaaattc-tcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||| ||||| |  || |||||| ||||||||| ||||||| ||||||| ||||||||   || ||||||||| || |||     
T  19624273 ataaatattcaagaaatagacgctacgtcttcacatcaaaattcaaacaacatgcatatataaaattcatcaacagtcgcagtggatataaatcatacat 19624174  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
     || ||| |||||||| ||||| ||||| ||||| ||| ||| ||  ||||||||||||||||    
T  19624173 ctccaaaatatacatgtcataagatcaatatacatcatcatataaaatctccaaatcccgaca 19624111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 14569338 - 14569458
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| ||  |||||||| |||||||||||   |||| ||||||| || |||     
T  14569338 atataaatattcaagaaatagacgctacgtcttcaac-aaattcaaacaacatgcatatataaaatttctcaacagtcgcagcgaatataaatcatacat 14569436  T
Q  99 ttcaaaagtatacatgccataa 120  Q
     || ||| |||||||| |||||    
T  14569437 ctccaaaatatacatgtcataa 14569458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 41258615 - 41258500
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaa-caacaagcatata---aaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| || |||||| |||||||||||| ||||| |||| ||   |||||||||||||||   ||||||||||||||| | |||||    
T  41258615 atattcaagaaatagacgctacatcatcatacaaaatccaaaacaacatgcatgtattaaaaattctcaacagtcgcagcggatataaaccatatacttc 41258516  T
Q  102 aaaagtatacatgccat 118  Q
    ||||  |||||||||||    
T  41258515 aaaa-catacatgccat 41258500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 54366284 - 54366200
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatata 88  Q
    ||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||  ||||||||||||||||||||  |||||||||||    
T  54366284 atattcaagaaatagacgctacgtcttcaacaaaaacaaaatcaacatgcatatataaaaattctcaacagtcgtagcggatata 54366200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12729339 - 12729416
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagt 75  Q
    ||||||||||| ||||||||||||| ||||| ||||||||| | ||| ||||| ||  ||||||||||||||||||||    
T  12729339 atataaatatttaagaaatagacgctacgtcttcaacaaaaacaaaatcaacatgcatatataaaaattctcaacagt 12729416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 5373351 - 5373199
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaaca-acaagcatata--aaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    |||||||| ||| |||||| ||||| ||||||||| ||||||| ||| |||||||  |||||||||||| ||   |||||||||||| || ||   || |    
T  5373351 atattcaaaaaacagacgctacgtcttcaacaaaa-ccaaacatacatgcatatataaaaattctcaacggtcgcagcggatataaatcatacttctcca 5373253  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatccc 157  Q
    || |||||||| ||| | ||||| ||||| ||| ||| || |||||||||||||    
T  5373252 aaatatacatgtcatgagatcaaaatacatcatcatataaattctccaaatccc 5373199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 12246471 - 12246382
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaa--caacaagcatataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||  ||||| ||||  | ||| ||||||||||   |||||||||||||||    
T  12246471 atattcaagaaatagacgctacgtcatcatacaaaattcaaattcaacatgcatgcataaaatctcaacagtcgcagcggatataaacca 12246382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 99079 - 99243
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||  |||| ||||  |||||||||||||||||||  |||||||||||| || |||    
T  99079 atataaatattcaagaaatagacgccacatcatcaaaaaaatccaaaataacatgcatgtataaaaattctcaacagttgcagcggatataaatcataca 99178  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    | ||||||||||||||||||| | | | | ||| ||||| |||||| ||||| ||||||||||||    
T  99179 cctcaaaagtatacatgccatgataacgaaatataacatcataaaaattctctaaatcccgacaa 99243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 84413 - 84531
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatc 155  Q
    |||||||||||||||| |||| ||||||||||||| || |||| ||||| ||||||| ||||| |||| |||||||||||| ||||||||||||||||||    
T  84413 atataaaaattctcaaaagttgtagcggatataaatcatacacctcaaatgtatacacgccatgaaattaagatacaacatcataaaagttctccaaatc 84512  T
Q  156 ccgacaaatagacaaatct 174  Q
    ||||||||| | |||||||    
T  84513 ccgacaaatgggcaaatct 84531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 25484 - 25648
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||| | ||||||||||| |||||| ||| ||||| ||||  ||||||||||||||||||   | || |||||||||| |||    
T  25484 atataaatattcaagaaatagatgtcacgtcatcaataaaatctaaaacaacatgcatgtataaaaattctcaacagtagcaacgaatataaaccataca 25583  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaa 162  Q
    ||||||||| ||||||||||| |  |||| ||||| ||| |||||| |||||||||||| |||||    
T  25584 cttcaaaagcatacatgccatgaggtcaaaatacatcatcataaaaattctccaaatcctgacaa 25648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 35860 - 35971
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||  |||||||||||||||||||  ||||||||||||||| |||| |||    
T  35860 aatattcaagaaatagacgccacatcatcaacaaaatccaaaacaacatgcatgtataaaaattctcaacagttgcagcggatataaaccatacacctca 35959  T
Q  103 aaagtatacatg 114  Q
    ||||||||||||    
T  35960 aaagtatacatg 35971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 4976 - 4820
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttcaaa 104  Q
    |||||||||||||||||| ||||| ||||||||| ||||| ||||| |||||||  |||||||||||| |||  |||||||||| | || |||  || ||    
T  4976 tattcaagaaatagacgctacgtcttcaacaaaaaccaaaacaacatgcatatataaaaattctcaacggttgcagcggatatagatcatacatctccaa 4877  T
Q  105 agtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    ||| |||||||||| ||||||| ||||||||| |||||| |||||||||||||||||    
T  4876 agtctacatgccatgaaatcaaaatacaacatcataaaaattctccaaatcccgaca 4820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 2208 - 2044
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaa-caaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||| || |||||||||| |||||||||||||||| |||||||  |||||||||||||||| |||||||||||||||| ||||||||    
T  2208 aatattcaagaaatagatgctacgtcatcaaacaaaatccaaacaacaggcatatataaaaattctcaacagttgtagcggatataaaccatacacttca 2109  T
Q  103 aaagta----tacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||  |    |||||||||| |  |||| ||||| ||| |||||| |||||| |||||||||||||    
T  2108 aaaaaaaacatacatgccatgaggtcaaaatacatcatcataaaaattctcc-aatcccgacaaat 2044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 14345 - 14254
Alignment:
Q  5 aaatattcaagaaatagacgccacgtcatcaa-caaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaacca 93  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  ||||||||||||||||  |||||||||||||||    
T  14345 aaatattcaagaaatagacgcctcgtcatcaaacaaaatccaaacaacaggcatatataaaaattctcaacagttgcagcggatataaacca 14254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 11241 - 11086
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaac-aacaagcat--ataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||| |||| ||||  |||||||||||||||||||  | ||||||||||||| |||    
T  11241 atataaatatttaagtaatagattccacgtcatcaacaaaatccaaaccaacatgcatgtataaaaattctcaacagttgcaacggatataaaccataca 11142  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaa 153  Q
    | | ||||||||||||| ||| | ||||| ||||| ||| |||||| |||||||||    
T  11141 cctaaaaagtatacatgtcatgatatcaaaatacatcatcataaaaattctccaaa 11086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 3919 - 3808
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||  |||||||||||||||||||  ||| ||||||||||| |||| |||    
T  3919 aatattcaagaaatagacgtcacgtcatcaacaaaatcctaaacaacatgcatgtataaaaattctcaacagttgcagcagatataaaccatacacctca 3820  T
Q  103 aaagtatacatg 114  Q
    ||||||||||||    
T  3819 aaagtatacatg 3808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 19273 - 19440
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaaca--agcatataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||     ||||||||||| |||||||||  |||||||||| | || |||     
T  19273 atataaatattcaagaaatagacgctatgtcatcaacaaaatccaaacaacatttatatataaaaattatcaacagttgcagcggatatagatcatacat 19372  T
Q  99 ttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatag 166  Q
     || ||||| |||||| ||| | ||||| ||||| ||| ||| || ||||||||||||||||| ||||    
T  19373 ctccaaagtctacatgtcatgagatcaaaatacatcatcatataaattctccaaatcccgacatatag 19440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3267 - 3101
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataa-aaattctcaacagttttagcggatataaaccacac 96  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |||  ||||| ||| ||||||||||   ||||||||||||||| ||    
T  3267 atataaatattaaagaaatagacgctacgtcatcaacaaaatccaaaacaacatgcatgtataagaaactctcaacagtcgcagcggatataaaccagac 3168  T
Q  97 acttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctcc-aaatcccgacaa 162  Q
    || ||||||||||||||| ||| | ||||| ||||| ||| || ||| || ||| ||||||||||||    
T  3167 acctcaaaagtatacatgtcatgatatcaaaatacatcatgatcaaaattttccaaaatcccgacaa 3101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 99183 - 99019
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaac--aaaatccaaacaacaagcatata--aaaattctcaacagttttagcggatataaaccacac 96  Q
    ||||||||||||||||||||||||| ||||| |||    ||||| ||||||||| |||||||  |||||||||||||||   |||||||||||  || ||    
T  99183 atataaatattcaagaaatagacgctacgtcttcacataaaaattcaaacaacatgcatatataaaaattctcaacagtcgcagcggatataagtcatac 99084  T
Q  97 acttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    |  || |||||||||||| ||| | ||||| ||||| ||||||| || |||||||||||||||||    
T  99083 atctccaaagtatacatgtcatgagatcaatatacatcattatataaattctccaaatcccgaca 99019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 66481 - 66521
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaa 47  Q
    ||||| ||||||||||||| |||||||||||||||| ||||    
T  66481 atatttaagaaatagacgctacgtcatcaacaaaattcaaa 66521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 141491 - 141379
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaacc-acacacttc 101  Q
    ||||||||||||||||| |||| ||| |||||||||||| |||||||| |||  ||||||||||||||||||||  |||||||||||||| | |||| ||    
T  141491 aatattcaagaaatagatgccaggtcctcaacaaaatccaaaacaacatgcatgtataaaaattctcaacagttgcagcggatataaaccaatacacctc 141392  T
Q  102 aaaagtatacatg 114  Q
    |||||||||||||    
T  141391 aaaagtatacatg 141379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 20082 - 20193
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||| |||  ||||||||||||||||||||  |||  ||||||| || |||| |||    
T  20082 aatattcaagaaatagacgtcacgtcatgaacaaaatccaaaacaacatgcatgtataaaaattctcaacagttgcagcaaatataaatcatacacctca 20181  T
Q  103 aaagtatacatg 114  Q
    ||||||||||||    
T  20182 aaagtatacatg 20193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 103922 - 104035
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||||| |||  ||||||||||||||||||||  ||||||||| ||||| |||| |||    
T  103922 aatattcaagaaatagacgccacgtcttcaataaaatccaaaacaacatgcatgtataaaaattctcaacagttgcagcggatat-aaccatacacctca 104020  T
Q  103 aaagtatacatgccat 118  Q
    ||| ||||||||||||    
T  104021 aaa-tatacatgccat 104035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 7126 - 6961
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaat-ccaaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||||||||||||||||||||||| || |||||||| |||| | |||||||| |||  ||||||  || |||||||||  ||||||||||||||  | |    
T  7126 atataaatattcaagaaatagacgctacttcatcaacgaaatgcaaaacaacatgcatgtataaattttttcaacagttgcagcggatataaaccttata 7027  T
Q  98 cttcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
      ||||||| |||||||| || | ||||| ||||| ||| |||||| ||||||||||||||||||||    
T  7026 actcaaaagcatacatgctatgatatcaa-atacatcatcataaaaattctccaaatcccgacaaat 6961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26257 - 26144
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatcc-aaacaacaagca--tataaaaattctcaacagttttagcggatataaaccacaca 97  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||  |||| ||||| ||||||||   ||| ||||||||||| |||    
T  26257 atataaatattcaagaaatagacgtcacatcatcaacaaaatccaaaacaacatgcatgtatacaaattttcaacagtcgcagcagatataaaccataca 26158  T
Q  98 cttcaaaagtatac 111  Q
    | ||||||||||||    
T  26157 cctcaaaagtatac 26144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 26125 - 26045
Alignment:
Q  83 gatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattat-aaaagttctccaaatcccgacaa 162  Q
    ||||||||||| |||| ||||||||||||||| ||| | ||||| ||||| ||| || |||| ||||||||||||||||||    
T  26125 gatataaaccatacacctcaaaagtatacatgtcatgatatcaaaatacatcatcataaaaaattctccaaatcccgacaa 26045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 2881 - 3041
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaa-caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||| |  ||||||||| |||||||||||| ||||| ||||  |||||||||||||||| |   |||||||||||||||  |||||||    
T  2881 atattcaagaaatagatgatacgtcatcatacaaaatccaaaacaacatgcatgtataaaaattctcaacaatcgcagcggatataaaccattcacttca 2980  T
Q  103 aaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    || | ||||||||||| | ||||| |||||  || |||||| |||||||| |||||||||||    
T  2981 aa-gcatacatgccatgatatcaaaatacataatcataaaaattctccaagtcccgacaaat 3041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 99426 - 99266
Alignment:
Q  7 atattcaagaaatagacgccacgtcatc-aacaaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttcaa 103  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||| |||| || |||| ||||||||||   ||||||||||||||| | ||||| |    
T  99426 atattcaagaaatagacgctacgtcatcaaacaaaatccaaaacaacatgcatgtataaaaatctcaacagtcgcagcggatataaaccatatacttc-a 99328  T
Q  104 aagtatacatgccataaaatcaaga-tacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||| ||||||||||||| ||||| | |||  ||  ||||||||||||||| ||| |||||||    
T  99327 aagcatacatgccataatatcaaaagtacgtcaacataaaagttctccaagtcctgacaaat 99266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 506 - 624
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaa-caaaatccaaa-caacaagcatataaaaa--ttctcaacagttttagcggatataaaccacac 96  Q
    ||||||||||| ||||||||||||| || ||||||| ||||||||||| ||||| ||||||| |||  ||||||||||||  ||||||||||||||| |     
T  506 atataaatattgaagaaatagacgctacatcatcaaacaaaatccaaaacaacatgcatatataaacgttctcaacagttgcagcggatataaaccatat 605  T
Q  97 acttcaaaagtatacatgc 115  Q
    | |||||||| ||||||||    
T  606 aattcaaaagcatacatgc 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 11375 - 11536
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaa--caaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttca 102  Q
    |||||||||||||||||||||| |||||||  |||||||| |||||||| |||| || |||| ||||||||||   ||||||||||||||| | |||||     
T  11375 atattcaagaaatagacgccacatcatcaattcaaaatccaaaacaacatgcatgtataaaaatctcaacagtcgcagcggatataaaccatatacttc- 11473  T
Q  103 aaagtatacatgccataaaat-caagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||| ||||||| ||| | ||  || ||||||||  ||||||||||||||| |||||||||||    
T  11474 aaagaatacatgacatgatataaaaaatacaacaacataaaagttctccaagtcccgacaaat 11536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45822 - 45745
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaaca-aaatccaaacaacaagc--atataaaaattctcaacagt 75  Q
    |||||||||||||| |||||||||| |||||||||||| |||||||||||||| ||  ||||||| ||||||||||||    
T  45822 atataaatattcaaaaaatagacgctacgtcatcaacataaatccaaacaacatgcatatataaatattctcaacagt 45745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 106846 - 106731
Alignment:
Q  6 aatattcaagaaatagacgccacgtcatca-acaaaa-tccaaacaa-caagcatataaaaattctcaacagttttagcgga-tataaaccacacacttc 101  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||| || ||||||| ||| ||||||||||   |||||| ||||||||| | |||||    
T  106846 aatattcaagaaatagacgctacgtcatcatacaaaattccaaacaatcatgcatatataaaatctcaacagtcgcagcggattataaaccatatacttc 106747  T
Q  102 aaaagtatacatgccat 118  Q
    |||| ||||||||||||    
T  106746 aaaa-tatacatgccat 106731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 20037 - 19889
Alignment:
Q  19 tagacgccacgtcatcaa-caaaatccaaa--caacaagcatataa-aaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatg 114  Q
    ||||||| || ||||||| |||||||||||  ||||| |||||||  ||| || |||||||  |||||||||||||||| | |||||||| | |||||||    
T  20037 tagacgctacatcatcaaacaaaatccaaaatcaacatgcatatattaaaatcgcaacagtcgtagcggatataaaccatatacttcaaa-gcatacatg 19939  T
Q  115 ccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||| | ||||| |||||  || |||||| |||||||| |||||||||||    
T  19938 ccatgatatcaaaatacataatcataaaatttctccaagtcccgacaaat 19889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 29613 - 29465
Alignment:
Q  19 tagacgccacgtcatcaa-caaaatccaaa--caacaagcatataa-aaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatg 114  Q
    ||||||| || ||||||| |||||||||||  ||||| |||||||  ||| || |||||||  |||||||||||||||| | |||||||| | |||||||    
T  29613 tagacgctacatcatcaaacaaaatccaaaatcaacatgcatatattaaaatcgcaacagtcgtagcggatataaaccatatacttcaaa-gcatacatg 29515  T
Q  115 ccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    |||| | ||||| |||||  || |||||| |||||||| |||||||||||    
T  29514 ccatgatatcaaaatacataatcataaaatttctccaagtcccgacaaat 29465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 29042 - 29200
Alignment:
Q  7 atattcaagaaatagacgccacgtcatc-aacaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| |||||||| |||||||| ||||  ||||| ||||  ||||||| ||||||||||   |||||||||||| || | |||||    
T  29042 atattcaagaaatagacgctacgtcatcaaacaaaattcaaattcaacatgcatgcataaaaa-tctcaacagtcgcagcggatataaatcatatacttc 29140  T
Q  102 aaaagtatacatgccataaaatc-aagatacaacattataaaagttctccaaatcccgaca 161  Q
     |||| ||||||||||| | ||| || ||||| ||  ||||||||||||||| ||||||||    
T  29141 -aaaggatacatgccatgatatcaaaaatacatcaacataaaagttctccaagtcccgaca 29200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 123607 - 123520
Alignment:
Q  56 atataaaaattctcaacagttttagcggatataaaccacacacttcaaaagtatacatgccataaaatcaagatacaacattataaaa 143  Q
    ||||| |||||||||| ||||  ||| |||||||| || |||| ||||||||||||||| ||| | ||||| ||||| ||| ||||||    
T  123607 atatataaattctcaatagttgcagcagatataaatcatacacctcaaaagtatacatgtcatgagatcaaaatacatcatcataaaa 123520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 248038 - 247918
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatcaacaaaatccaaacaacaagc--atataaaaattctcaacagttttagcggatataaaccacacac 98  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| ||||||||| ||  |||||||| |||||||||||   |||| ||||||| || |||     
T  248038 atataaatattcaagaaatagacgctacgtcttcaac-aaattcaaacaacatgcatatataaaatttctcaacagtcgcagcgaatataaatcatacat 247940  T
Q  99 ttcaaaagtatacatgccataa 120  Q
     || ||| |||||||| |||||    
T  247939 ctccaaaatatacatgtcataa 247918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 73518 - 73362
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagc--atataaaaattctcaacagttttagcggatataaaccacacacttcaaa 104  Q
    ||||||||||||||| || |||||  | | |||| ||||| ||||| ||  |||||||||||||||||| |   |||||||||||| || |||  || ||    
T  73518 tattcaagaaatagatgctacgtctacgataaaaaccaaatcaacatgcatatataaaaattctcaacaatcgcagcggatataaatcatacatctccaa 73419  T
Q  105 agtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgaca 161  Q
    |||||||||||||| | ||||| ||||| ||| ||| || |||||||| ||||||||    
T  73418 agtatacatgccatgagatcaaaatacatcatcatataaattctccaagtcccgaca 73362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 199584 - 199478
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatc-aacaaaatcc-aaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacaca 97  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||| |||||||| |||| || |||| | ||||||||   |||||||||||| || | |    
T  199584 atatatatattcaagaaatagacgctacgtcatcaaacaaaatccaaaacaacatgcatgtataaaaatgtcaacagtcgcagcggatataaaacatata 199485  T
Q  98 cttcaaa 104  Q
    |||||||    
T  199484 cttcaaa 199478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 7376 - 7264
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttcaaa 104  Q
    ||||||||||||||||||| |||| | || |||||||||||| |||| |||| || |||| ||||||  ||   ||||||||||||||| | ||||| ||    
T  7376 atattcaagaaatagacgctacgtgagcatacaaaatccaaataacatgcatgtataaaaatctcaattgtcacagcggatataaaccatatacttc-aa 7278  T
Q  105 agtatacatgccat 118  Q
    ||||||||||||||    
T  7277 agtatacatgccat 7264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 31773 - 31717
Alignment:
Q  108 atacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||||||||||| | |||||||||||  || ||||||||||||||| |||||||||||    
T  31773 atacatgccattatatcaagatacataatcataaaagttctccaagtcccgacaaat 31717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 2426 - 2592
Alignment:
Q  8 tattcaagaaatagacgccacgtcatcaa--caaaatccaaacaacaagcatata-aaaattctcaacagttttagcggatataaaccacacacttcaaa 104  Q
    ||||||||||||||| || ||||| |||   |||||| ||||||||| ||||||| |||||||||||||||   |||||||||||  |  |||   | ||    
T  2426 tattcaagaaatagatgctacgtcttcacatcaaaattcaaacaacatgcatatataaaattctcaacagtcgcagcggatataagtcctacatcaccaa 2525  T
Q  105 agtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaatagacaaa 171  Q
    |||||||||| ||||| ||||| ||||| |  || | ||  |||||||| |||||||||||| ||||    
T  2526 agtatacatgtcataagatcaacatacatccataaataaaatctccaaaacccgacaaataggcaaa 2592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1068 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1068
Description:

Target: scaffold1068; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1252 - 1286
Alignment:
Q  1 atataaatattcaagaaatagacgccacgtcatca 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  1252 atataaatattcaagaaatagacgctacgtcatca 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 10223 - 10375
Alignment:
Q  7 atattcaagaaatagacgccacgtcatcaacaaaatccaaa-caacaagcatataaaaa--ttctcaacagttttagcggatataaaccacacacttcaa 103  Q
    |||||||||||||||| || ||||  ||||||||| | ||| ||||| ||||||| |||  |||||||||||   |||||||||| | || |||  || |    
T  10223 atattcaagaaatagatgctacgtattcaacaaaaacaaaatcaacatgcatatataaaagttctcaacagtcgcagcggatatagatcatacatctcca 10322  T
Q  104 aagtatacatgccataaaatcaagatacaacattataaaagttctccaaatccc 157  Q
    |||| |||||||||| | ||||| ||||| ||| || ||| |||||||||||||    
T  10323 aagtctacatgccatgagatcaaaatacatcatcattaaa-ttctccaaatccc 10375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33415 - 33503
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaa--caacaagcatataaaaattctcaacagttttagcggatataaacca 93  Q
    ||||||||||||||||| | ||||||||| ||||||| ||||  ||||| |||| |||||| ||||||||||   |||||||||||||||    
T  33415 atattcaagaaatagacactacgtcatcatacaaaattcaaattcaacatgcatgtaaaaa-tctcaacagtcgcagcggatataaacca 33503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 25604 - 25443
Alignment:
Q  7 atattcaagaaatagacgccacgtcatca-acaaaatccaaa--caacaagcat--ataaaaattctcaacagttttagcggatataaaccacacacttc 101  Q
    ||||||||||||||||||| || |||||| ||||||| ||||  ||||| ||||  ||||||| ||||||||||   ||||||||||||||| | |||||    
T  25604 atattcaagaaatagacgctacatcatcatacaaaattcaaattcaacatgcatgcataaaaa-tctcaacagtcgcagcggatataaaccaaatacttc 25506  T
Q  102 aaaagtatacatgccataaaatc-aagatacaacattataaaagttctccaaatcccgacaaat 164  Q
      ||| ||||||| ||| | ||| || ||||| ||  ||||| ||||||||| |||||||||||    
T  25505 -gaagcatacatggcatgatatcaaaaatacatcaacataaatgttctccaagtcccgacaaat 25443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 18665 - 18728
Alignment:
Q  100 tcaaaagtatacatgccataaaatcaagatacaacattataaaagttctccaaatcccgacaaat 164  Q
    ||||||| |||||||| || | ||||| ||||| ||| |||||| ||||||||||||||||||||    
T  18665 tcaaaagcatacatgctatgatatcaa-atacatcatcataaaaattctccaaatcccgacaaat 18728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University