View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14825_low_1 (Length: 1413)
Name: NF14825_low_1
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 1134; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1134; E-Value: 0
Query Start/End: Original strand, 143 - 1397
Target Start/End: Complemental strand, 56279363 - 56278097
Alignment:
| Q |
143 |
tcaatatgaataatttaattgagtacactgaagatatggaggagaggcaggtacatggcctacaaacaaacaagatcgatggacaggcatttaattgttg |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56279363 |
tcaagatgaataatttaattgagtacactgaagatatggaggagaggcaggtacatggcctacaaacaaacaagatcgatggacaggcatttaattgttg |
56279264 |
T |
|
| Q |
243 |
gactgctgtaagtaattgagttgtttgggatacaagctaccaaaatgtaatagtggcatttgaaacaaaaagtggctgcagcggtgcatcaaaaaggacc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56279263 |
gactgctgtaagtaattgagttgtttgggatacaagctaccaaaatgtaa--gtggcatttgaaacaaaaagtggctgcagcggtgcatcaaaaaggacc |
56279166 |
T |
|
| Q |
343 |
agacacagcatagataatagaaaccaa--gtacaactgatttatgtatgttgaagggatgcgcataaaattattatgtgctggtcttggattcaataaga |
440 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56279165 |
agacacagcatagataatagaaaccaattgtacaactgatttatgt----tgaagggatgcgcataaaattattatgtgctggtcttggattcaataaga |
56279070 |
T |
|
| Q |
441 |
tggatgtgccaattatactgctgaatcattttgcattatggcagagttatgatcagttcagtagttatgttgggtgagatggatgtaggcgttgcaggga |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56279069 |
tggatgtgccaattatactgctgaatcattttgcattatggcagagttatgatcagttcagtagttatgttgggtgagatggatgtaggcgttgcaggga |
56278970 |
T |
|
| Q |
541 |
gctattttaattgtatactggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgactattcttgatgtaaacc |
640 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56278969 |
gctattttaattgtatattggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgactattcttgatgtaaacc |
56278870 |
T |
|
| Q |
641 |
aatatcacatatatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttcttttatcaaagaaatagaaaata |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278869 |
aatatcacatatatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttcttttatcaaagaaatagaaaata |
56278770 |
T |
|
| Q |
741 |
aactcatcataaaacattgccagatacttaacaagcaaaagtatgcaaagatcaaatggttatgcattgactgaaatactattaataactcatggcagaa |
840 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
56278769 |
aactcatcataaaacattggcagatacttaacaagcaaaagtatgcaaagatcaaatggttatgcattgactgaaatactattaacaactcattgcagaa |
56278670 |
T |
|
| Q |
841 |
atattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataac-------------ttccaca |
927 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
56278669 |
atattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttcagctcaaaatttccaca |
56278570 |
T |
|
| Q |
928 |
gctatggaat----ggaaggaaggaaccttccaggcaacttagtttctacatatatataaactaaaatggtcccaaaacattcggtgataatccgataat |
1023 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
56278569 |
gctatggaatggaaggaaggaaggaaccttccaggcaacttagtttctacatatatataaactaaaat-atcccaaaacattcggtgataatccgataat |
56278471 |
T |
|
| Q |
1024 |
aaaagctaatatataggagttagttctatactaaggatcttttagggaaaccaaagtcaaggaatgaggaaatactgtaggatgcgacaaggattgtggg |
1123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278470 |
aaaagctaatatataggagttagttctatactaaggatcttttagggaaaccaaagtcaaggaatgaggaaatactgtaggatgcgacaaggattgtggg |
56278371 |
T |
|
| Q |
1124 |
ttgagttgtagaaaggaacaagcatgagcaatcttgtgattcttcatgtcatagatgtataactctgcagaaaccttaatcagcaatttcccatctttga |
1223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278370 |
ttgagttgtagaaaggaacaagcatgagcaatcttgtgattcttcatgtcatagatgtataactctgcagaaaccttaatcagcaatttcccatctttga |
56278271 |
T |
|
| Q |
1224 |
agccaagaggattcatccaaggatttgtatcatcactctccaacactctattccttagattcaaaaagaggcgtggatattctgcttcaaaatcctccaa |
1323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278270 |
agccaagaggattcatccaaggatttgtatcatcactctccaacactctattccttaaattcaaaaagaggcgtggatattctgcttcaaaatcctccaa |
56278171 |
T |
|
| Q |
1324 |
aagtttgcaatgcttaagcagccatttgaagtcaaaataatcttcaagagaatcaagacaccagacatgaagac |
1397 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56278170 |
aagtttgcaatgcttaagcacccatttgaagtcaaaataatcttcaagagaatcaagacaccagacatgaagac |
56278097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 56279567 - 56279488
Alignment:
| Q |
18 |
tatggatgttaacacaactagtactccgcacacttcagaattgcagctgagttaaattaaaaac--aagaaacagtatga |
95 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
56279567 |
tatggatgataacacaactagtactccgcacacttcagaattgcagctgagttaaattaaaaacaaaagaaacagtatga |
56279488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 56279458 - 56279405
Alignment:
| Q |
98 |
aattcatgaacttgactttccaacttgtgaatgataaagagggcatcaatatga |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56279458 |
aattcatgaacttgactttccaacttgtgaatgataaagagggcatcaatatga |
56279405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 446 - 923
Target Start/End: Complemental strand, 46571709 - 46571223
Alignment:
| Q |
446 |
gtgccaattatactgctgaatcattttgcattatggcagagttatgat--cagt----tcagt-agttatgttgggtgagatggatgtaggcgttgcagg |
538 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |||| |||| | ||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
46571709 |
gtgccaattatagtgctgaatcattttgcattatggctaagttgtgatgtcagtagtttgagtgagcaatgttgggtgagatggatgtaggcattgcagg |
46571610 |
T |
|
| Q |
539 |
gagctattttaattgtatac-------------tggaataggccaatgcacagggttggtagaattgggtgagatactttagtgtcatgtaatgtgacta |
625 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46571609 |
gagctattctaattgtatttgggtgctgtcttttggaattggccaatgcacggggctggtagaatttggtgagatactttagtgtcatgtaatgtgacta |
46571510 |
T |
|
| Q |
626 |
ttcttgatgtaaaccaatatcacatatatagcatgtgttgtgcttgtgagaactaactgttttagaagtcctagaacactccttagtccttcttttatca |
725 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || |||| || || | | ||||| ||||| |||||||||||||| |||| |
|
|
| T |
46571509 |
ttcttgatgtaaaccaatatcacatg----gcatgtgttgtgctcgttagaaatattcatt---gcaatcctatgacacttcttagtccttcttt-atca |
46571418 |
T |
|
| Q |
726 |
aagaaatagaaaataaactcatcataaaacattgccagatacttaacaagcaaaagtatgcaaagatcaaatggttatgcattgactgaaatactattaa |
825 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46571417 |
aataaatagaaaataaattcatcataaaacaatgtcagatatttaacaagcaaaagtatgcaaagatgaaatggttatgcattgactgaaatactattat |
46571318 |
T |
|
| Q |
826 |
taactca-tggcagaaatattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc |
923 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
46571317 |
caactcattgccagaaatattatttgaaacttgaaaccattgatcaactgaaatttgtccac----atactaaaatggttagtaagaatatataacttc |
46571223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 5e-38
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 46571853 - 46571710
Alignment:
| Q |
191 |
aggtacatggcctacaaacaaacaagatcgatggacaggcatttaattgttggactgctgtaagtaattgagttgtttgggatacaagctaccaaaatgt |
290 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46571853 |
aggtacatggcctacaa----acaagatcgatggagaggcatttaattgttgaactaatgtaggtaattgagttgtttgggatacaagttaccaaaatgt |
46571758 |
T |
|
| Q |
291 |
aatagtggcatttgaaacaaaaagtggctgcagcggtgcatcaaaaagga |
340 |
Q |
| |
|
| ||||||||| |||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
46571757 |
a--agtggcattagaaacaaaaagtagcagcagcagtgcatcaaaaagga |
46571710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 46572000 - 46571949
Alignment:
| Q |
100 |
ttcatgaacttgactttccaacttgtgaatgataaagagggcatcaatatga |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46572000 |
ttcatgaacttgactttccaacttgtgaatgataaagagggcaacaatatga |
46571949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 836 - 923
Target Start/End: Original strand, 15979201 - 15979284
Alignment:
| Q |
836 |
cagaaatattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaatatataacttc |
923 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15979201 |
cagaaatattaattgaaacttgaaaacattgatcaactcaaatttctccac----atactaaaatggctagtaagaatatataacttc |
15979284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 836 - 912
Target Start/End: Original strand, 19125618 - 19125690
Alignment:
| Q |
836 |
cagaaatattaattgaaacttgaaaacattgatcaactcaaatttgtccacatatatactaaaatggctagtaagaa |
912 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
19125618 |
cagaaatattcattgaaacttgaaaacattgatcaactcaaatttgtccac----atactaaaatggcgagtaagaa |
19125690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 893 - 923
Target Start/End: Original strand, 19146607 - 19146637
Alignment:
| Q |
893 |
actaaaatggctagtaagaatatataacttc |
923 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19146607 |
actaaaatggctagtaagaatatataacttc |
19146637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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