View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14825_low_11 (Length: 280)
Name: NF14825_low_11
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9070147 - 9069922
Alignment:
| Q |
1 |
tctctattctatgaccataactataagcaaatgaaagtccccaaattaaacaaagatttggagcatacaaattgttattaataatagttagctaatatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9070147 |
tctctattctatgaccataactataagcaaatgaaaatccccatattaaacagagatttggagcatacaaattgttatcaataatagttagctaatatta |
9070048 |
T |
|
| Q |
101 |
aataagtgtcacatattgaattagataagacctcaccaaaagtttataacaagagacaatcatcaaattacaaatcggttttgtaaggttaagttagctt |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9070047 |
aataagtgtcacatattgaattacataagacctcaccaaaagtttataacaagagacaatcatcaaattacaaatcggttttgtaaggttaagttagctc |
9069948 |
T |
|
| Q |
201 |
aactaaaattcttacactatagctac |
226 |
Q |
| |
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||| |||||||||||||||||||||| |
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|
| T |
9069947 |
aaccaaaattcttacactatagctac |
9069922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 9073064 - 9072787
Alignment:
| Q |
2 |
ctctattctatgaccataacta-taagcaaatgaaagtccccaaattaaacaaagatttggagcatacaaattgttatt-aataatagttagctaatatt |
99 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||| || |||||||||||||||||||||||||||| |||||| | |||||||||||||||||| | |
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| T |
9073064 |
ctctattctatgaccataataactaagcaaattaaaatcatcaaattaaacaaagatttggagcatacattttgttaatcaataatagttagctaataat |
9072965 |
T |
|
| Q |
100 |
aa-ata-agtgtcacatattgaattagataagacctcaccaaaagtttataacaagagacaatcatcaaattacaaatcggttttgtaaggttaagttag |
197 |
Q |
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|| || |||||||||||| |||| |||||||||||||| |||||||||||| | ||||||||||||||| |||| |||||||| || ||||||||||| |
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| T |
9072964 |
aatatcgagtgtcacatatggaatgagataagacctcactaaaagtttataagca-agacaatcatcaaataacaagtcggttttatacggttaagttag |
9072866 |
T |
|
| Q |
198 |
cttaactaaaattcttacactatagctacataatccatt--agagttttagcagcgggagcatagtcataaccaccatc |
274 |
Q |
| |
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| ||| ||||||||||||||| | ||||||||| |||| ||||||| |||||| |||||||||||||| |||||||| |
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| T |
9072865 |
ttcaaccaaaattcttacactacatctacataatacattagagagtttaagcagcaggagcatagtcatagccaccatc |
9072787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 9063852 - 9063787
Alignment:
| Q |
156 |
acaatcatcaaattacaaatcggttttgtaaggttaagttagcttaactaaaattcttacactata |
221 |
Q |
| |
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||||||||||| ||||||| |||||||||| |||||||||| | ||| ||||||||||||||||| |
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|
| T |
9063852 |
acaatcatcaacttacaaagcggttttgtagagttaagttagttcaaccaaaattcttacactata |
9063787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 9060493 - 9060425
Alignment:
| Q |
206 |
aaattcttacactatagctacataatccattagagttttagcagcgggagcatagtcataaccaccatc |
274 |
Q |
| |
|
||||||| || |||||| || ||||| |||||||||| ||||||||||||||| ||||| |||||||| |
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|
| T |
9060493 |
aaattctaactctatagttagataatatattagagtttaagcagcgggagcataatcatatccaccatc |
9060425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 9077567 - 9077475
Alignment:
| Q |
128 |
agacctcaccaaaagtttataacaagagacaatcatcaaattacaaatcggttttgtaaggttaagtta-gcttaactaaaattcttacacta |
219 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||| || |||||| ||||||||||| |||||| ||| ||| ||| |||||| |||||||| |
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| T |
9077567 |
agaccccaccataagtttataaatggagacaatcattaacttacaagtcggttttgtagggttaaattaggctcaaccaaaattgttacacta |
9077475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 9063997 - 9063933
Alignment:
| Q |
3 |
tctattctatgaccataactataagcaaatgaaagtccccaaattaaacaaagatttggagcataca |
69 |
Q |
| |
|
|||||||||||||||||| || || |||| ||| |||||||||||||||||| |||| |||||||| |
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|
| T |
9063997 |
tctattctatgaccataatta--agaaaattaaaatccccaaattaaacaaaggtttgaagcataca |
9063933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 9063755 - 9063721
Alignment:
| Q |
240 |
gttttagcagcgggagcatagtcataaccaccatc |
274 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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|
| T |
9063755 |
gtttaagcagcgggagcatagtcataaccaccatc |
9063721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 35346000 - 35346042
Alignment:
| Q |
233 |
cattagagtttta-gcagcgggagcatagtcataaccaccatc |
274 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35346000 |
cattagagttttacgcagcgggagcatagtcataaccaccatc |
35346042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 35364259 - 35364298
Alignment:
| Q |
233 |
cattagagtttta-gcagcgggagcatagtcataaccacc |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35364259 |
cattagagttttatgcagcgggagcatagtcataaccacc |
35364298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 35368134 - 35368173
Alignment:
| Q |
233 |
cattagagtttta-gcagcgggagcatagtcataaccacc |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35368134 |
cattagagttttatgcagcgggagcatagtcataaccacc |
35368173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 35371504 - 35371543
Alignment:
| Q |
233 |
cattagagttttag-cagcgggagcatagtcataaccacc |
271 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
35371504 |
cattagagttttaggcagcgggagcatagtcataaccacc |
35371543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 35374297 - 35374336
Alignment:
| Q |
233 |
cattagagtttta-gcagcgggagcatagtcataaccacc |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35374297 |
cattagagttttatgcagcgggagcatagtcataaccacc |
35374336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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