View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14825_low_13 (Length: 264)
Name: NF14825_low_13
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 32882712 - 32882474
Alignment:
| Q |
9 |
gaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttcgaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgt |
108 |
Q |
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| T |
32882712 |
gaagaatataaacgctggtttccaatcggaacgatgccgttgtaaaactttgaggacaaggttgttgttggggtgaattccagtgaggttaagagctcgt |
32882613 |
T |
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| Q |
109 |
tcgatttgttctgtgggtttgtctctgcggaatttgagaaggttttggatgaacgaagcttgtgatggtgattcatggtgtgagtgaaggaatcgttgat |
208 |
Q |
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| T |
32882612 |
tcgatttgttctgtgggtttgtctctgcggaatttgagaaggttttggattaacgaagcttgtgatggtgaatcatggtgtgagtgaaggaatcgttgat |
32882513 |
T |
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| Q |
209 |
gatgagtttcgaggatttttaggaaacaaagaggggaat |
247 |
Q |
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| T |
32882512 |
gatgagtttcgaggattttgaggaaactaagaggggaat |
32882474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 25711591 - 25711828
Alignment:
| Q |
9 |
gaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttcgaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgt |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| || |
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| T |
25711591 |
gaagaatataaacgctggtttccaatcggaacgatgccgttgcaaaacttggaggacaaggttgttgttggggtgaattccaatgaggttaagagcttgt |
25711690 |
T |
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| Q |
109 |
tcgatttgttctgtgggtttgtctctgcggaatttgagaaggttttggatgaacgaagcttgtgatggtgattcatggtgtgagtgaaggaatcgttgat |
208 |
Q |
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| T |
25711691 |
tcgatttgttctgtgggtttgtctctgcggaatttgagaaggttttggatgaacgaagctagtggtggtgaatcatggtgtgagtgaaggaatcg-tgat |
25711789 |
T |
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| Q |
209 |
gatgagtttcgaggatttttaggaaacaaagaggggaat |
247 |
Q |
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| T |
25711790 |
gatgagtttcgaggattttgaggaaacgaagaggggaat |
25711828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 28087376 - 28087508
Alignment:
| Q |
9 |
gaagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttcgaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgt |
108 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||| ||||||||| |||||| ||||||| || ||||| ||||| |||||||||||| |
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| T |
28087376 |
gaagaatataaacgctggtttccaatcggaccgatgccgttgcaaaagttcgaggacgaggttgctgtcgggatggattccggtgagattaagagctcgt |
28087475 |
T |
|
| Q |
109 |
tcgatttgttctgtgggtttgtctctgcggaat |
141 |
Q |
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| T |
28087476 |
tcgatttgttctgtgggtttatctctgcggaat |
28087508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 35480457 - 35480588
Alignment:
| Q |
10 |
aagaatataaacgctggtttccaatcagaacgatgccgttgcaaaacttcgaggacaaggttgttgtcggggtgaattccagtgaggttaagagctcgtt |
109 |
Q |
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|||||||||||||||||||| |||| || ||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||| |||| |||||||| |
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| T |
35480457 |
aagaatataaacgctggttttcaattggatcgatgtcgttgcaaaacttcgaggacgaggttgctgtcggggtggattccagtgagattaaaagctcgtt |
35480556 |
T |
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| Q |
110 |
cgatttgttctgtgggtttgtctctgcggaatt |
142 |
Q |
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| T |
35480557 |
c-aattgttctttgggtttgtctctgcagaatt |
35480588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 26723425 - 26723457
Alignment:
| Q |
140 |
atttgagaaggttttggatgaacgaagcttgtg |
172 |
Q |
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| T |
26723425 |
atttgagaaggttttggatgaatgaagcttgtg |
26723457 |
T |
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