View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14825_low_15 (Length: 227)
Name: NF14825_low_15
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 32745651 - 32745457
Alignment:
| Q |
18 |
attggattagtgaaacaataccttcacgcattaataacatatcgtttcgaatggtggagtatgaaagtactgcaataggatcagcatcagttgagtatga |
117 |
Q |
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| T |
32745651 |
attggattagtgaaacaataccttcatgcattaataacatatcgtttcgaatggtggagtatgaaagtactgcaataggatcagcatcagttgagtatga |
32745552 |
T |
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| Q |
118 |
tgatgactcaaaggataaaattcagtattatgaaaatactgcagtagcactcatttttcgaatggatgaaatttggttcgtcccgggaaatacct |
212 |
Q |
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| T |
32745551 |
tgatgactcaaaggataaaattcagtattatgaaaatactgcagtagcattcatttttcgaatggatgaaatttggttcgtcccgggaaatacct |
32745457 |
T |
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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 4912643 - 4912451
Alignment:
| Q |
18 |
attggattagtgaaacaataccttcacgcattaataacatatcgtttcgaatggtggagtatgaaagtactgcaataggatcagcatcagttgagtatga |
117 |
Q |
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||||||||| ||||||||||||| || ||||||| || ||||| ||| |||||| |||| | ||| ||||||| ||||| | | |||| || |||| |
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| T |
4912643 |
attggattaatgaaacaatacctccatgcattaagaatatatcatttaaaatggtagagtttcaaactactgcagtaggaggaagagcagtgcagaatga |
4912544 |
T |
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| Q |
118 |
tgatgactcaaaggataaaattcagtattatgaaaatactgcagtagcactcatttttcgaatggatgaaatttggttcgtcccgggaaatac |
210 |
Q |
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| T |
4912543 |
taatgactcaaaggataaaattcagtattatggaaatactgcaacatcatacatttttttagtggatgatatttggttcacccctggaaatac |
4912451 |
T |
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