View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14825_low_3 (Length: 590)
Name: NF14825_low_3
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 33352949 - 33353513
Alignment:
| Q |
18 |
ttattcacaagctttctataaattctttgcatctttttgttgtggtaggggtaaaagtgaacttacccatatgaaatgagttcataaaaattgacgtgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33352949 |
ttattcacaagctttctataaattctttgcatctttttgttgtggtaggggtaaaagtgaacttacccatatgaaatgagttcataaaaattgacgtgaa |
33353048 |
T |
|
| Q |
118 |
tcaagttcccatatacattactcagttttgaattcaacnnnnnnnnntgcatgcaaaatgttcaaaatcaaccttgcacactcttttaatgttttcttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33353049 |
tcaagttcccatatacattactcagttttgaattcatcaaaaaaaa-tgcatgcaaaatgttcaaaatcaaccttgcacactcttttaatgttttcttta |
33353147 |
T |
|
| Q |
218 |
taatgagtatacatttcaaaagaatagctattcagagtaaataggcttagtaggtttggtagtaaggccaaacccaaatgggaaaagggggtcataatga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33353148 |
taatgagtatacatttcaaaagaatagctattcagagtaaataggcttagtaggtttggtagtaaggccaaacccaaatgggaaaacggggtcataatga |
33353247 |
T |
|
| Q |
318 |
ggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacatcagccacac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33353248 |
ggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacatcagccacac |
33353347 |
T |
|
| Q |
418 |
cttgtccttcactacctggtagccaaccagcaacaactgcatctatcaaaccaacatacggttcgataactaaaggccggcccgaaataatgataaccac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33353348 |
cttgtccttcactacctggtagccaaccagcaacaactgcatctatcaaaccaacatacggttcaataactaaaggccggcccgaaataatgataaccac |
33353447 |
T |
|
| Q |
518 |
acacttcatagctccacaaacatttgttatgatctcaggaccagggtttgggattgtcaggttcat |
583 |
Q |
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| T |
33353448 |
acacttcatagctccacaaacatttgttatgatctcaggaccagggtttgggattgtcaagttcat |
33353513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 33346352 - 33346411
Alignment:
| Q |
21 |
ttcacaagctttctataaattctttgcatctttttgttgtggtaggggtaaaagtgaact |
80 |
Q |
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|||||||||||| || |||||||||||| ||||||||||||||| |||||| ||||||| |
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| T |
33346352 |
ttcacaagctttttaagaattctttgcatttttttgttgtggtagaggtaaaggtgaact |
33346411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 315 - 424
Target Start/End: Original strand, 11244309 - 11244418
Alignment:
| Q |
315 |
tgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacatcagcca |
414 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||| |||||||||||| |||| ||| || || ||||||||||| |||||||| | |||||| |||| |
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| T |
11244309 |
tgaggatctccaacattcattgggagttgatcgacagatttgaaccatgtccttgcaagtttaccagtgaaaccatagtcaccaaaaagaacatctgcca |
11244408 |
T |
|
| Q |
415 |
caccttgtcc |
424 |
Q |
| |
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|||||||||| |
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| T |
11244409 |
caccttgtcc |
11244418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 443
Target Start/End: Complemental strand, 10005866 - 10005702
Alignment:
| Q |
279 |
gtaaggccaaacccaaatgggaaaagggggtcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttc |
378 |
Q |
| |
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||||||||||| |||||||| || | || |||||||||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || | |
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| T |
10005866 |
gtaaggccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtccttggaagtttac |
10005767 |
T |
|
| Q |
379 |
ctgtgaaaccataatcaccaaataaaacatcagccacaccttgtccttcactacctggtagccaa |
443 |
Q |
| |
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| || || |||||||||||||| |||||||| || ||||| ||||||||||| || |||||| |
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|
| T |
10005766 |
cggtaaatccataatcaccaaacaaaacatcggcaacaccagaaccttcactaccaggaagccaa |
10005702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 451
Target Start/End: Complemental strand, 9992733 - 9992591
Alignment:
| Q |
309 |
tcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttcctgtgaaaccataatcaccaaataaaacat |
408 |
Q |
| |
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|||||||||| ||| |||||||||||||| | ||||||||| | || |||||||| || | |||||| || || || |||||||||||||| ||||||| |
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| T |
9992733 |
tcataatgagaatcaccaacattcattggcaactgatcaacagtcttaaaccatgtcctagcaagcttaccagtaaatccataatcaccaaacaaaacat |
9992634 |
T |
|
| Q |
409 |
cagccacaccttgtccttcactacctggtagccaaccagcaac |
451 |
Q |
| |
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|||| ||||| ||||||||||| || |||||| ||||||| |
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| T |
9992633 |
cagcaacaccagtaccttcactaccaggaagccaagcagcaac |
9992591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 443
Target Start/End: Complemental strand, 9999718 - 9999554
Alignment:
| Q |
279 |
gtaaggccaaacccaaatgggaaaagggggtcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttc |
378 |
Q |
| |
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||||| ||||| |||||||| || | || |||||||||| ||| |||||||||||||| | ||||||||| | || |||||||| |||||||| || | |
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| T |
9999718 |
gtaagaccaaatccaaatggaaacaaaggatcataatgagaatcaccaacattcattggtaactgatcaacagtcttaaaccatgtccttggaagtttac |
9999619 |
T |
|
| Q |
379 |
ctgtgaaaccataatcaccaaataaaacatcagccacaccttgtccttcactacctggtagccaa |
443 |
Q |
| |
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| || || |||||||||||||| |||||||| || ||||| ||||||||||| || |||||| |
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| T |
9999618 |
cggtaaatccataatcaccaaacaaaacatcggcaacaccagaaccttcactaccaggaagccaa |
9999554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 443
Target Start/End: Complemental strand, 10014207 - 10014043
Alignment:
| Q |
279 |
gtaaggccaaacccaaatgggaaaagggggtcataatgaggatctccaacattcattggaagttgatcaacacttttgaaccatgttcttggaagctttc |
378 |
Q |
| |
|
||||| ||||||||||| || || | || ||||||||| |||| ||||||||||| || | |||| ||| | || |||||||| |||| |||||| | |
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| T |
10014207 |
gtaagaccaaacccaaacggaaacaaaggatcataatgacgatccccaacattcatcggtaactgatggacagtcttaaaccatgtccttgaaagcttac |
10014108 |
T |
|
| Q |
379 |
ctgtgaaaccataatcaccaaataaaacatcagccacaccttgtccttcactacctggtagccaa |
443 |
Q |
| |
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| || || |||||||||||||| ||||||||||| ||||| ||||||||||| || |||||| |
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|
| T |
10014107 |
cagtaaatccataatcaccaaacaaaacatcagcaacaccagtaccttcactaccaggaagccaa |
10014043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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