View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14825_low_4 (Length: 499)
Name: NF14825_low_4
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14825_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 31895087 - 31894622
Alignment:
| Q |
18 |
cttagatcagaacaattcatcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31895087 |
cttagatcagaacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattc |
31894988 |
T |
|
| Q |
118 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31894987 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
31894888 |
T |
|
| Q |
218 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31894887 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
31894788 |
T |
|
| Q |
318 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagat-nnnnnnnnnccttttggtctgaattg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31894787 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagataaaaaaaaaaccttttggtctgaattg |
31894688 |
T |
|
| Q |
417 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31894687 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
31894622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 31899671 - 31899206
Alignment:
| Q |
18 |
cttagatcagaacaattcatcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899671 |
cttagatcagaacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattc |
31899572 |
T |
|
| Q |
118 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899571 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
31899472 |
T |
|
| Q |
218 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899471 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
31899372 |
T |
|
| Q |
318 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagat-nnnnnnnnnccttttggtctgaattg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31899371 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagataaaaaaaaaaccttttggtctgaattg |
31899272 |
T |
|
| Q |
417 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31899271 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
31899206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 31915380 - 31914915
Alignment:
| Q |
18 |
cttagatcagaacaattcatcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31915380 |
cttagatcagaacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattc |
31915281 |
T |
|
| Q |
118 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31915280 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
31915181 |
T |
|
| Q |
218 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31915180 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
31915081 |
T |
|
| Q |
318 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagat-nnnnnnnnnccttttggtctgaattg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31915080 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagataaaaaaaaaaccttttggtctgaattg |
31914981 |
T |
|
| Q |
417 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31914980 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
31914915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 31949028 - 31948563
Alignment:
| Q |
18 |
cttagatcagaacaattcatcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31949028 |
cttagatcagaacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattc |
31948929 |
T |
|
| Q |
118 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948928 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
31948829 |
T |
|
| Q |
218 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948828 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
31948729 |
T |
|
| Q |
318 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagat-nnnnnnnnnccttttggtctgaattg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31948728 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagataaaaaaaaaaccttttggtctgaattg |
31948629 |
T |
|
| Q |
417 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31948628 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
31948563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 31683345 - 31683810
Alignment:
| Q |
18 |
cttagatcagaacaattcatcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683345 |
cttagatcagaacaattcatcaatttcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
31683444 |
T |
|
| Q |
118 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683445 |
ttaggctctgcaacttgggtgccaaaaccgataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatcaaaatcttgaggtaa |
31683544 |
T |
|
| Q |
218 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683545 |
actgtttcgtgtgaatgcacttcctatcctttcttgagaacgttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaactagaaa |
31683644 |
T |
|
| Q |
318 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaagaaagat-nnnnnnnnnccttttggtctgaattg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
31683645 |
aaaggtaatgagttttcattagagaacaaaatcaaataagctttcattagaacaaaatcaaataaggaaagataaaaaaaaaaccttttggtctgaattg |
31683744 |
T |
|
| Q |
417 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31683745 |
gcagaaccagcatccagtcttgcctccactgacaacgcatcgacccttccctgtgtctcattgcct |
31683810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 52652209 - 52652357
Alignment:
| Q |
18 |
cttagatcagaacaattcatcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattc |
117 |
Q |
| |
|
||||||| |||||||||||| |||| |||| |||||||| ||| | |||| ||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
52652209 |
cttagattagaacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattc |
52652308 |
T |
|
| Q |
118 |
ttaggctctgcaacttgggtgccaaaaccaataattgtgatgcattaga |
166 |
Q |
| |
|
||||| |||||||||| || | ||||| ||| |||| |||||||||||| |
|
|
| T |
52652309 |
ttaggttctgcaactttggcggcaaaaacaacaattttgatgcattaga |
52652357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 357
Target Start/End: Original strand, 52652686 - 52652785
Alignment:
| Q |
259 |
gttttgcaatattatttgcaccctaatcacaatattacaaggtcaaagttaacta-gaaaaaaggtaatgagttttcattagagaacaaaatcaaataag |
357 |
Q |
| |
|
||||||| |||||| |||||| ||||||| || ||| |||||||||||||||| | | ||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
52652686 |
gttttgctatattacttgcacactaatcaaaacattgcaaggtcaaagttaacaactagaaaagaaaatgaacttttattagagaacaaaatcaaataag |
52652785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 3915665 - 3915498
Alignment:
| Q |
36 |
atcaattgcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattcttaggctctgcaacttgg |
135 |
Q |
| |
|
||||||| ||||| |||||| ||| | |||||||||||||||||||||| ||||| |||||||||| || ||| |||| ||||||||||| ||| |
|
|
| T |
3915665 |
atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggatggacaaccaatgattcacatccctcaattactaggctctgcagattgt |
3915566 |
T |
|
| Q |
136 |
gtgccaaaaccaataattgtgatgcattagaaacagtgcaagtttcatacaatatctcttgatcatca |
203 |
Q |
| |
|
||| |||| ||| ||||||||||| ||||| || |||| |||||| | ||||| |||||||||||| |
|
|
| T |
3915565 |
gtggcaaagacaacaattgtgatgccttagataccatgcatgtttcaaataatatttcttgatcatca |
3915498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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