View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14825_low_6 (Length: 326)

Name: NF14825_low_6
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14825_low_6
NF14825_low_6
[»] chr8 (7 HSPs)
chr8 (1-326)||(15850214-15850539)
chr8 (62-269)||(18602878-18603082)
chr8 (137-228)||(15131813-15131902)
chr8 (3-37)||(28421122-28421156)
chr8 (3-44)||(15132008-15132049)
chr8 (62-123)||(28421191-28421252)
chr8 (168-212)||(13097687-13097731)
[»] chr4 (13 HSPs)
chr4 (3-288)||(17732855-17733150)
chr4 (3-122)||(31734575-31734703)
chr4 (62-227)||(40289002-40289164)
chr4 (175-301)||(658249-658376)
chr4 (62-105)||(3420002-3420045)
chr4 (175-244)||(18198645-18198714)
chr4 (3-44)||(45612480-45612521)
chr4 (66-122)||(658430-658486)
chr4 (175-243)||(9120998-9121066)
chr4 (3-38)||(40289198-40289233)
chr4 (65-123)||(45612390-45612449)
chr4 (3-41)||(24600931-24600969)
chr4 (161-245)||(55680928-55681012)
[»] chr3 (19 HSPs)
chr3 (62-301)||(43921720-43921955)
chr3 (3-299)||(11410764-11411070)
chr3 (62-301)||(10515941-10516177)
chr3 (63-190)||(26565452-26565577)
chr3 (44-123)||(14218532-14218611)
chr3 (183-299)||(25092165-25092282)
chr3 (62-123)||(10657389-10657450)
chr3 (69-288)||(17715628-17715848)
chr3 (69-288)||(19016857-19017077)
chr3 (175-282)||(49861212-49861320)
chr3 (44-123)||(49861102-49861181)
chr3 (74-123)||(27109683-27109732)
chr3 (3-44)||(43921983-43922024)
chr3 (81-162)||(21408763-21408844)
chr3 (1-44)||(49860496-49860539)
chr3 (3-41)||(27063821-27063859)
chr3 (175-205)||(27064003-27064033)
chr3 (3-44)||(21408900-21408941)
chr3 (62-123)||(27109285-27109346)
[»] chr7 (16 HSPs)
chr7 (3-257)||(37338583-37338844)
chr7 (62-325)||(10678443-10678704)
chr7 (89-300)||(27616492-27616702)
chr7 (150-246)||(11816771-11816865)
chr7 (167-224)||(27994152-27994209)
chr7 (3-44)||(44572506-44572547)
chr7 (223-300)||(46014514-46014591)
chr7 (187-326)||(46533118-46533257)
chr7 (3-44)||(27616406-27616447)
chr7 (3-44)||(45216003-45216044)
chr7 (223-287)||(8799705-8799769)
chr7 (223-286)||(6440048-6440111)
chr7 (3-38)||(22290943-22290978)
chr7 (150-211)||(11820401-11820460)
chr7 (161-248)||(45215849-45215935)
chr7 (265-301)||(44572314-44572350)
[»] chr5 (4 HSPs)
chr5 (62-253)||(40838052-40838241)
chr5 (194-299)||(32676423-32676528)
chr5 (4-123)||(32676586-32676716)
chr5 (3-44)||(40837984-40838024)
[»] chr1 (10 HSPs)
chr1 (44-301)||(18488341-18488595)
chr1 (3-123)||(32740930-32741058)
chr1 (3-301)||(48632360-48632664)
chr1 (3-299)||(9148775-9149079)
chr1 (3-38)||(18476588-18476623)
chr1 (1-44)||(23431946-23431989)
chr1 (44-94)||(126384-126435)
chr1 (137-223)||(23432096-23432180)
chr1 (193-291)||(127899-127999)
chr1 (232-301)||(23432190-23432259)
[»] chr6 (13 HSPs)
chr6 (8-196)||(57082-57280)
chr6 (3-248)||(12843984-12844238)
chr6 (1-302)||(1255434-1255745)
chr6 (62-199)||(17540167-17540303)
chr6 (44-228)||(14494286-14494468)
chr6 (161-228)||(19294577-19294644)
chr6 (3-44)||(17540098-17540139)
chr6 (161-248)||(34011035-34011121)
chr6 (161-248)||(34013729-34013815)
chr6 (62-123)||(34709102-34709163)
chr6 (3-37)||(19294463-19294497)
chr6 (66-123)||(19542292-19542350)
chr6 (3-44)||(19542219-19542260)
[»] chr2 (18 HSPs)
chr2 (44-248)||(34409410-34409610)
chr2 (44-120)||(9929782-9929857)
chr2 (175-285)||(44649768-44649877)
chr2 (64-123)||(26576213-26576272)
chr2 (161-325)||(15989817-15989981)
chr2 (62-123)||(27004188-27004249)
chr2 (62-122)||(13039029-13039089)
chr2 (137-224)||(17651477-17651562)
chr2 (3-247)||(32200670-32200904)
chr2 (3-41)||(44650010-44650048)
chr2 (74-300)||(4747855-4748080)
chr2 (134-228)||(18724592-18724684)
chr2 (3-37)||(26576142-26576176)
chr2 (47-104)||(15990038-15990095)
chr2 (161-198)||(41849246-41849283)
chr2 (3-39)||(9929712-9929748)
chr2 (169-197)||(12273917-12273945)
chr2 (208-240)||(26542261-26542293)
[»] scaffold0002 (1 HSPs)
scaffold0002 (175-244)||(289083-289152)
[»] scaffold0325 (1 HSPs)
scaffold0325 (1-37)||(12957-12993)
[»] scaffold0019 (1 HSPs)
scaffold0019 (62-104)||(70040-70082)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15850539 - 15850214
Alignment:
Q  1 catttatttattcatctactatcaaaaaagctaaaaatgttatatgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15850539 catttatttattcatctactatcaaaaaagctaaaaatgttatatgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatc 15850440  T
Q  101 tacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccgg 200  Q
    |||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15850439 tacggaatgtggaagcaagagagaaaaaaatatttcagatattcgtcttagttgtccgacacacggctcttataagtgttatataggtgtcagacaccgg 15850340  T
Q  201 tcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaatgtcggacacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  15850339 tcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgtcgtacgagtgtcataggagtgtcggacacc 15850240  T
Q  301 gtaacacggttggttcaagaggtgtc 326  Q
    |||| |||| ||||||||||||||||    
T  15850239 gtaatacggctggttcaagaggtgtc 15850214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 269
Target Start/End: Complemental strand, 18603082 - 18602878
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatc-tacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgac 160  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||       || || ||||||| |||| ||||||||||     
T  18603082 ttgatcaacatttctcaaaacatatgtaactcttgtatcataccgtatgtggaagcaagagagaaaaaaatgctttagatatttgtctgagttgtccgaa 18602983  T
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa-caattttatttaggacaccgattttagttgt 259  Q
    |||  | ||    | | ||| |||||||||| ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  18602982 aca--gttcg---atgagttttataggtgtcggacaccggtcttaggagtgtcgaatcaaagaaaaaaacaattttatttaggacaccgattttagttgt 18602888  T
Q  260 ctgatacgtg 269  Q
    | || |||||    
T  18602887 ccgacacgtg 18602878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 15131902 - 15131813
Alignment:
Q  137 agatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa 228  Q
    ||||||| |||| |||||| ||||||   |||||||| ||||||||||||||||| |||||||||| || |||||| ||| |||||||||||    
T  15131902 agatatttgtctgagttgttcgacact--gctcatatgagtgttatataggtgtcggacaccggtcgtaggagtgtcgaagtaaagaaaaaa 15131813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 28421122 - 28421156
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||    
T  28421122 tttatttattcatctactatcaaaaaagctaaaaa 28421156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 15132049 - 15132008
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||||||||| |||||||||| ||||||||||||||| ||||    
T  15132049 tttatttatttatctactatcgaaaaagctaaaaatgatata 15132008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 28421191 - 28421252
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||| |||| |||||| |||||||||||||||||||| ||  || |||||| ||||||    
T  28421191 ttgatcaagatttctcaaaatatatgtaactcttgtatctatggtgtgcggaagcgagagag 28421252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 13097687 - 13097731
Alignment:
Q  168 tcatataagtgttatataggtgtcagacaccggtcttaagagtgt 212  Q
    ||||||||||||||||||||||||  |||||||||| | ||||||    
T  13097687 tcatataagtgttatataggtgtcgcacaccggtctaaggagtgt 13097731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 17732855 - 17733150
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata-----------tgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||           ||||||| |||||| | || |||||||||| |||||||| |||||||    
T  17732855 tttatttattcatctactatcaaaaaagctaaaaatgttataatcaactgtaatgtctattacctcctaattaatcaacatttctcaaaacacatgtaac 17732954  T
Q  92 tcttgtatctacggaatgtggaagcaagagagnnnnnnn--tgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtg 189  Q
    |||||||||||||  |||||||||||||||||         ||||||| ||||| |||  |||||||||||||  ||||| ||| | ||||||| |||||    
T  17732955 tcttgtatctacgatatgtggaagcaagagagaaaaaaaaatgtttcatatatttgtcagagttgtccgacac--ggctcgtatgaatgttatagaggtg 17733052  T
Q  190 tcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcatagga 288  Q
    || |||||||||| || |||||| |||||||||||||||  |||||||||  |||||||||||||||||||||| ||||| || || ||| ||||||||    
T  17733053 tc-gacaccggtcctaggagtgtcgaattaaagaaaaaaatattttatttgagacaccgattttagttgtctgacacgtgtcgaacaagtttcatagga 17733150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 31734575 - 31734703
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata-----------tgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    ||||||||||||||||||||||||| ||||||||||||||||           ||||||| |||  |||  |||||||||||| ||||||||||||||||    
T  31734575 tttatttattcatctactatcaaaagagctaaaaatgttataatcaactataatgtctattacc--ccatgtgatcaacatttctcaaaacatatgtaac 31734672  T
Q  92 tcttgtatctacggaatgtggaagcaagaga 122  Q
    |||||||||||||| ||||||||||||||||    
T  31734673 tcttgtatctacggtatgtggaagcaagaga 31734703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 227
Target Start/End: Complemental strand, 40289164 - 40289002
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgaca 161  Q
    ||||| ||||||| ||||||||||||||| ||||||||||| ||  ||||||||||||||||       ||||| ||||||| || | |||||||||  |    
T  40289164 ttgattaacatttctcaaaacatatgtaaatcttgtatctatggtgtgtggaagcaagagag-aaaaaatgttttagatatttgtttgagttgtccg--a 40289068  T
Q  162 cacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaa 227  Q
    || | ||| ||| ||||||||||||||||| ||||||| || || |||||| ||| ||||||||||    
T  40289067 catgactcgtatgagtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaaaaa 40289002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 301
Target Start/End: Complemental strand, 658376 - 658249
Alignment:
Q  175 agtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa--caattttatttaggacaccgattttagttgtctgatacgtgccg 272  Q
    |||||| |||||||||| ||||||| ||| | |||||| ||| |||||||||||  |||||||||||||||||| | | || ||| || || ||||| ||    
T  658376 agtgttgtataggtgtcggacaccgttct-aggagtgtcgaagtaaagaaaaaaaacaattttatttaggacactggtcttggttatccgacacgtgtcg 658278  T
Q  273 tacgagtgtcataggaatgtcggacaccg 301  Q
    ||| |||||||||| | ||||||||||||    
T  658277 tacaagtgtcatagaagtgtcggacaccg 658249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 3420002 - 3420045
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacgg 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  3420002 ttgatcaacatttctcaaaacatatgtaactcttgtatctacgg 3420045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 18198714 - 18198645
Alignment:
Q  175 agtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggac 244  Q
    ||||||||||||||||| ||||||||| | | |||||| | | |||||||||||||||| ||||||||||    
T  18198714 agtgttatataggtgtcggacaccggtgtaaggagtgtcggagtaaagaaaaaacaattgtatttaggac 18198645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 45612521 - 45612480
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  45612521 tttatttattcatctactatcaaaaaagctaaaaatgatata 45612480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 658486 - 658430
Alignment:
Q  66 tcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagaga 122  Q
    |||||||||||||  ||||||||||||||||| |||||||  ||||||| |||||||    
T  658486 tcaacatttttcagcacatatgtaactcttgtttctacggtgtgtggaaccaagaga 658430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 9121066 - 9120998
Alignment:
Q  175 agtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttagga 243  Q
    ||||||||||||||||||||||| ||||  | |||||  ||| ||||| |||||||||| |||||||||    
T  9121066 agtgttatataggtgtcagacactggtccaatgagtgccgaagtaaaggaaaaacaattatatttagga 9120998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 40289233 - 40289198
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaat 38  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40289233 tttatttattcatctactatcaaaaaaactaaaaat 40289198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 45612449 - 45612390
Alignment:
Q  65 atcaacatttttcaaaa-catatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||||| |||||| ||||||||||||||||||||| ||  || |||||||||||||    
T  45612449 atcaacatttctcaaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagag 45612390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 24600931 - 24600969
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgtt 41  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  24600931 tttatttatccatctactatcaaaaaagttaaaaatgtt 24600969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 55680928 - 55681012
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggaca 245  Q
    |||| |||| ||| ||||||| ||||||||| ||||||| || || |||||| ||| ||||||||||| |   ||||||||||||    
T  55680928 acacagctcgtatgagtgttacataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaaaaaaaacaattatttaggaca 55681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 62 - 301
Target Start/End: Complemental strand, 43921955 - 43921720
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgaca 161  Q
    ||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||       || || ||||||| |||| |||||||||| |    
T  43921955 ttgatcaacatttctcaaaacatatgtaactcttgtatctactgtatgtggaagcaagagagaaaaaaatgctttagatatttgtctgagttgtccgaaa 43921856  T
Q  162 cacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa-caattttatttaggacaccgattttagttgtc 260  Q
    |  || ||  || |||||||||  |||||| |||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  43921855 c--ggttcg-atgagtgttata--ggtgtcggacaccggtcctaggagtgttgaattaaagaaaaaaacaattttatctaggacaccgattttagttgtc 43921761  T
Q  261 tgatacgtgccgtacgagtgtcataggaatgtcggacaccg 301  Q
     || ||||| |  || |||||||||||| ||||||||||||    
T  43921760 cgacacgtgtcagacaagtgtcataggagtgtcggacaccg 43921720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 3 - 299
Target Start/End: Original strand, 11410764 - 11411070
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata-----------tgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    |||||||||||||||||||||||||| ||||||| |||||||           | ||||| ||| || | ||||||||||||| ||||||||||||||||    
T  11410764 tttatttattcatctactatcaaaaaggctaaaactgttataatcaacaataatatctattaccccctaattgatcaacatttctcaaaacatatgtaac 11410863  T
Q  92 tcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtc 191  Q
    |||||||||||||| ||||||||| |||||||       |||||  |||||| |  | ||||||| |  ||| ||||| ||| |||||||||||||||||    
T  11410864 tcttgtatctacggtatgtggaagtaagagagaaaaaaatgttttcgatatttgcataagttgtctg--acatggctcgtatgagtgttatataggtgtc 11410961  T
Q  192 agacaccggtcttaagagtgttgaattaa--agaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaa 289  Q
     |||||||||| || |||||| |||||||  | ||||||  ||||||||||||||| |||||||||||||| || | ||| |  || ||||||||||||     
T  11410962 -gacaccggtcctaggagtgtcgaattaagtaaaaaaaaatattttatttaggacatcgattttagttgtccgacatgtgtcagacaagtgtcataggag 11411060  T
Q  290 tgtcggacac 299  Q
    ||||||||||    
T  11411061 tgtcggacac 11411070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 301
Target Start/End: Complemental strand, 10516177 - 10515941
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgaca 161  Q
    ||||| ||||||||| |||||||||||||||||||||||||||| |  |||||| |||||||       | ||| ||||||| |  | ||||||| ||||    
T  10516177 ttgattaacattttttaaaacatatgtaactcttgtatctacggtacatggaagtaagagagaaaaaa-tattttagatatttgcatgagttgtctgaca 10516079  T
Q  162 cacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtct 261  Q
    |  | ||| ||| ||| ||||| ||||||| |||||||  | ||  ||||| |||| |||||||||||||||||||||| ||||| |||||||||||||     
T  10516078 c--gactcgtatgagtattatacaggtgtcggacaccgaccctagaagtgtcgaatcaaagaaaaaacaattttatttaagacactgattttagttgtcc 10515981  T
Q  262 gatacgtgccgtacgagtgtcataggaatgtcggacaccg 301  Q
     | ||||  || || |||||||||||| | ||||||||||    
T  10515980 aacacgtatcggacaagtgtcataggagtctcggacaccg 10515941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 26565452 - 26565577
Alignment:
Q  63 tgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacac 162  Q
    |||||||||||| | |||||||||||||||||| |||||| |  |||||||||||||||||       ||||| ||||||| |||| |||||||||  ||    
T  26565452 tgatcaacatttctaaaaacatatgtaactcttatatctaagatatgtggaagcaagagagaaaaaaatgttttagatatttgtctgagttgtccg--ac 26565549  T
Q  163 acggctcatataagtgttatataggtgt 190  Q
    ||||||| ||| ||||||||||||||||    
T  26565550 acggctcgtatgagtgttatataggtgt 26565577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 14218532 - 14218611
Alignment:
Q  44 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||| ||| || | ||||||||||||| |||||| |||||| |||||||| ||||||| |||||||||||||||||    
T  14218532 atgtctattaccccctaattgatcaacatttatcaaaatatatgtgactcttgtgtctacggtatgtggaagcaagagag 14218611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 25092282 - 25092165
Alignment:
Q  183 ataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaaca--attttatttaggacaccgattttagttgtctgatacgtgccgtacgagtg 280  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||| |  |||||||||||||||||  | || |||||| || |||||  |||||||||    
T  25092282 ataggtgtcagacaccggtct-aagagtgtcgaagtaaagaaaaaaaattattttatttaggacaccagtcttggttgtccgacacgtgttgtacgagtg 25092184  T
Q  281 tcataggaatgtcggacac 299  Q
    |||||| | |||| |||||    
T  25092183 tcatagaagtgtcagacac 25092165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 10657450 - 10657389
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |  |||||| |||||||    
T  10657450 ttgatcaacatttttcaaaacatatgtaaatcttgtatctacggtacatggaagtaagagag 10657389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 288
Target Start/End: Complemental strand, 17715848 - 17715628
Alignment:
Q  69 acatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnn--tgtttcagatattcgtcttagttgtccgacacacgg 166  Q
    |||||| |||| |||||||||||||||||||| ||| | ||||||| ||||||||         ||||||||| ||| || | |||||||| |||    |    
T  17715848 acatttatcaacacatatgtaactcttgtatcgacgaagtgtggaaccaagagagaaataaaaatgtttcagacatttgtttgagttgtccaacaat--g 17715751  T
Q  167 ctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa--caattttatttaggacaccgattttagttgtctgat 264  Q
    ||  ||| ||||||||||||||||||||||||| ||| | ||||||  || |||||||||||  ||||||||||||| ||| | || ||||||||| ||     
T  17715750 cttgtatgagtgttatataggtgtcagacaccgatct-aggagtgtcaaagtaaagaaaaaatacaattttatttagaacatcaatcttagttgtccgac 17715652  T
Q  265 acgtgccgtacgagtgtcatagga 288  Q
    ||||| |||||||| || ||||||    
T  17715651 acgtgtcgtacgagcgttatagga 17715628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 288
Target Start/End: Complemental strand, 19017077 - 19016857
Alignment:
Q  69 acatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnn--tgtttcagatattcgtcttagttgtccgacacacgg 166  Q
    |||||| |||| |||||||||||||||||||| ||| | ||||||| ||||||||         ||||||||| ||| || | |||||||| |||    |    
T  19017077 acatttatcaacacatatgtaactcttgtatcgacgaagtgtggaaccaagagagaaataaaaatgtttcagacatttgtttgagttgtccaacaat--g 19016980  T
Q  167 ctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa--caattttatttaggacaccgattttagttgtctgat 264  Q
    ||  ||| ||||||||||||||||||||||||| ||| | ||||||  || |||||||||||  ||||||||||||| ||| | || ||||||||| ||     
T  19016979 cttgtatgagtgttatataggtgtcagacaccgatct-aggagtgtcaaagtaaagaaaaaatacaattttatttagaacatcaatcttagttgtccgac 19016881  T
Q  265 acgtgccgtacgagtgtcatagga 288  Q
    ||||| |||||||| || ||||||    
T  19016880 acgtgtcgtacgagcgttatagga 19016857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 49861212 - 49861320
Alignment:
Q  175 agtgttatataggtgtcagacaccggtcttaagagtgttgaa-ttaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgt 273  Q
    |||||||||||||||||||||||||||| || |||| | ||| ||||  |||||||||||||||||||| ||||  |  |||||||| || ||||| | |    
T  49861212 agtgttatataggtgtcagacaccggtcctaggagtttcgaagttaagaaaaaaacaattttatttaggtcaccagtcctagttgtccgacacgtgtcat 49861311  T
Q  274 acgagtgtc 282  Q
    |||||||||    
T  49861312 acgagtgtc 49861320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 49861102 - 49861181
Alignment:
Q  44 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||| ||| || | ||||||||||| | ||||||| ||||||||||||||||||||||  ||| ||||||||||||    
T  49861102 atgtctatgaccccctaattgatcaacatatctcaaaacttatgtaactcttgtatctacggtgtgtagaagcaagagag 49861181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 27109732 - 27109683
Alignment:
Q  74 tttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  27109732 tttcaaaacatatgtaactcttgtatttacggtgtgtggaagcaagagag 27109683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 43922024 - 43921983
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  43922024 tttatttattcatctaatatcaaaaaagctaaaaatgttata 43921983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 21408844 - 21408763
Alignment:
Q  81 acatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacac 162  Q
    |||||||||||||||||||||| |  |||||||||||||||||       ||||| ||||||| || | |||||||||||||    
T  21408844 acatatgtaactcttgtatctaagttatgtggaagcaagagagaaaaaaatgttttagatatttgtttgagttgtccgacac 21408763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49860496 - 49860539
Alignment:
Q  1 catttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||||||||||| |||||||||||||| |||||||||| |||||    
T  49860496 catttatttatttatctactatcaaaagagctaaaaatcttata 49860539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 27063821 - 27063859
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgtt 41  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  27063821 tttatttattcatctactgtcataaaagctaaaaatgtt 27063859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Original strand, 27064003 - 27064033
Alignment:
Q  175 agtgttatataggtgtcagacaccggtctta 205  Q
    |||||||||||||||||||||||||||||||    
T  27064003 agtgttatataggtgtcagacaccggtctta 27064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 21408941 - 21408900
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||||||||||||||||||| ||||| | |||||||||||||    
T  21408941 tttatttattcatctactataaaaaaggttaaaaatgttata 21408900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 27109346 - 27109285
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    ||||||||||| |  ||||||||||||||| ||||||| |||||  ||| ||||||||||||    
T  27109346 ttgatcaacatatcacaaaacatatgtaacccttgtatttacggtgtgtagaagcaagagag 27109285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 37338844 - 37338583
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttat-----------atgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    |||||||||||||||||||||||||||| ||||||||||||           |||| || || | || | ||||||||||||| ||||| ||||||||||    
T  37338844 tttatttattcatctactatcaaaaaagttaaaaatgttattatcaactttaatgtttaaaatc-cctaattgatcaacatttctcaaagcatatgtaac 37338746  T
Q  92 tcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtc 191  Q
    |||||||||||||| |||||||||||||||||       ||||||||||||| |||| ||||||| |   |||| ||| ||| ||| |||||||| ||||    
T  37338745 tcttgtatctacggtatgtggaagcaagagag-aaaaaatgtttcagatatttgtctgagttgtctg--tcacgactcgtatgagtattatatagatgtc 37338649  T
Q  192 agacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagtt 257  Q
    ||||  | ||| || |||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  37338648 agacgtcagtcctaggagtgttgaattaaagaaaaaacaattttatttaagacaccgaatttagtt 37338583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 325
Target Start/End: Original strand, 10678443 - 10678704
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgaca 161  Q
    |||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||        ||||| | ||||| |||| ||||||| ||||    
T  10678443 ttgatcaatatttctcaaaacatacgtaactcttgtatctacggtatgtggaagcaagagaaaaagaaatgtttaa-atatttgtctgagttgtcagaca 10678541  T
Q  162 cacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaa-gaaaaaacaattttatttaggacaccgattttagttgtc 260  Q
    |  || || ||| ||||||||||||||||| |||||| ||| || |||||||||||||||  |||||||||||||||| ||||||||||||||| || ||    
T  10678542 c--ggttcgtatgagtgttatataggtgtcggacaccagtcctaggagtgttgaattaaataaaaaaacaattttattcaggacaccgattttaattttc 10678639  T
Q  261 tgatacgtgccgtacgagtgtcataggaatgtcggacaccgtaacacggttggttcaagaggtgt 325  Q
      | ||||| || || ||| | |||||| | ||||||||||  |||||||| || | ||||||||    
T  10678640 caacacgtgtcggacaagtattataggagtatcggacaccgcgacacggttagtcctagaggtgt 10678704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 27616492 - 27616702
Alignment:
Q  89 aactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggt 188  Q
    ||||||||||||||||   ||||||||||||||||       ||||||||||||| |||| |||||||||||||  ||||  ||| ||||| ||||||||    
T  27616492 aactcttgtatctacgacgtgtggaagcaagagagaaaaaaatgtttcagatatttgtctgagttgtccgacac--ggcttgtatgagtgtcatataggt 27616589  T
Q  189 gtcagacaccggtcttaagagtgttgaattaaagaa-aaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcatagg 287  Q
    | | ||||||| || || |||||| ||  ||||||| ||||||| |||||||||||||||| | |||||||||||| ||||| ||||||||||||||| |    
T  27616590 gccggacaccgttcctaggagtgtcgatgtaaagaagaaaacaaatttatttaggacaccggtcttagttgtctgacacgtgtcgtacgagtgtcatatg 27616689  T
Q  288 aatgtcggacacc 300  Q
    | |||||||||||    
T  27616690 agtgtcggacacc 27616702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 11816865 - 11816771
Alignment:
Q  150 agttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacac 246  Q
    |||||||||||||||  ||||||||||||| ||||| ||||||||||| | ||||| |||||| ||| ||||||| |||  |  |||||||||||||    
T  11816865 agttgtccgacacac--ctcatataagtgtcatataagtgtcagacacggatcttaggagtgtcgaaataaagaagaaaataacttatttaggacac 11816771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 27994152 - 27994209
Alignment:
Q  167 ctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaa 224  Q
    |||||||||||||||||||||| |||||||||||||  || ||||||||| |||||||    
T  27994152 ctcatataagtgttatataggtatcagacaccggtccaaaaagtgttgaagtaaagaa 27994209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 44572547 - 44572506
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  44572547 tttatttattcatctactatcaaaaaagctaaaaatgatata 44572506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 46014514 - 46014591
Alignment:
Q  223 aaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaatgtcggacacc 300  Q
    ||||||||||||||||||||||| || | || |||||| || || || |||||||||||||||||| | |||||||||    
T  46014514 aaaaaacaattttatttaggacaacggtcttggttgtccgacacatgtcgtacgagtgtcataggagtttcggacacc 46014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 46533118 - 46533257
Alignment:
Q  187 gtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcatag 286  Q
    ||||| |||||||||  || |||| | ||||||||| |||||||| ||||||||||| | ||||| ||||||||||  ||||  ||||| ||| | | ||    
T  46533118 gtgtcggacaccggttctaggagtctcgaattaaaggaaaaacaactttatttaggatatcgattgtagttgtctggcacgtatcgtacaagtattagag 46533217  T
Q  287 gaatgtcggacaccgtaacacggttggttcaagaggtgtc 326  Q
    || ||||||||||||  || ||||| || | |||||||||    
T  46533218 gagtgtcggacaccgcgacgcggttagtcctagaggtgtc 46533257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 27616406 - 27616447
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  27616406 tttatttatacatctactatcagaaaagctaaaaatgttata 27616447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 45216044 - 45216003
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  45216044 tttatttattcatctactgtcaaaaaagctaaaaatgatata 45216003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 8799705 - 8799769
Alignment:
Q  223 aaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcatagg 287  Q
    |||||||||||||||||||||||||| | ||| ||||| || |||||  |||| |||||||||||    
T  8799705 aaaaaacaattttatttaggacaccggtcttatttgtccgacacgtgatgtacaagtgtcatagg 8799769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 6440048 - 6440111
Alignment:
Q  223 aaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcatag 286  Q
    ||||||||||||||||||||||||   |||||| |||  || ||||| ||||||||||||||||    
T  6440048 aaaaaacaattttatttaggacacttgttttagatgtacgacacgtgtcgtacgagtgtcatag 6440111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 22290943 - 22290978
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaat 38  Q
    |||||||||| |||||||||||||||||||||||||    
T  22290943 tttatttattaatctactatcaaaaaagctaaaaat 22290978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 11820460 - 11820401
Alignment:
Q  150 agttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtg 211  Q
    ||||||| |||||||  |||| ||||||||||||||| |||||||||||| || ||||||||    
T  11820460 agttgtctgacacac--ctcaaataagtgttatatagatgtcagacaccgatcctaagagtg 11820401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 45215935 - 45215849
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaa-aaaacaattttatttaggacaccg 248  Q
    ||||||||| ||| ||||||| ||||||||| ||||||| || || |||||  ||| ||||||| |||||||  |||||||||||||||    
T  45215935 acacggctcgtatgagtgttacataggtgtcggacaccgatcgtaggagtgacgaagtaaagaaaaaaacaa--ttatttaggacaccg 45215849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 44572350 - 44572314
Alignment:
Q  265 acgtgccgtacgagtgtcataggaatgtcggacaccg 301  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  44572350 acgtgtcgtacgagtgtcataggagtgtcggacaccg 44572314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 40838052 - 40838241
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgaca 161  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||         ||||| ||| ||| |||| |||||||||  |    
T  40838052 ttgatcaacatttctcaaaacatatgtaactcttgtatctacggtatctggaagcaagaggaaaaaaaatgttttagacatttgtctgagttgtccg--a 40838149  T
Q  162 cacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgatttt 253  Q
    |||| ||  ||| |||||||||||| |||| ||||||||||  |||||||| |||||||  |||||||||||||||||||||||| ||||||    
T  40838150 cacgacttgtatgagtgttatatagatgtcggacaccggtccaaagagtgtcgaattaactaaaaaacaattttatttaggacactgatttt 40838241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 32676528 - 32676423
Alignment:
Q  194 acaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaatgtc 293  Q
    ||||||||| || |||||| ||| |||||||||||||||||||||||||||| || |  ||| ||||  | ||||| ||||| |||||||||||| ||||    
T  32676528 acaccggtcctaggagtgtcgaagtaaagaaaaaacaattttatttaggacatcggtcatagctgtccaacacgtgtcgtacaagtgtcataggagtgtc 32676429  T
Q  294 ggacac 299  Q
    ||||||    
T  32676428 ggacac 32676423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 32676716 - 32676586
Alignment:
Q  4 ttatttattcatctactatcaaaaaagctaaaaatgttat-----------atgtctataacctcccagttgatcaacatttttcaaaacatatgtaact 92  Q
    ||||||||||||||||||||||||||| ||||||||||||           ||||||||| || || | |||| |||||||| |||||||||||||||||    
T  32676716 ttatttattcatctactatcaaaaaagttaaaaatgttataatcaactttaatgtctatatccccctaattgaacaacatttctcaaaacatatgtaact 32676617  T
Q  93 cttgtatctacggaatgtggaagcaagagag 123  Q
    ||||||| |||    ||||||||||||||||    
T  32676616 cttgtatttacaatgtgtggaagcaagagag 32676586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 40837984 - 40838024
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  40837984 tttatttattcatctactatc-aaaaagctaaaaatgttata 40838024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 18488341 - 18488595
Alignment:
Q  44 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag-nnnnnnntgtttcagatat 142  Q
    |||||||| |||||| | || |||||||||| |||||||| |||||||||||| |||||||  |||||||||||||||||        ||||||| ||||    
T  18488341 atgtctattacctccaaattaatcaacatttctcaaaacacatgtaactcttggatctacgatatgtggaagcaagagagaaaaaaaatgtttcatatat 18488440  T
Q  143 tcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttagg 242  Q
    | |||  |||||||||  ||| ||||| ||| | ||||||||||||||| |||||||||| || |||||| |||||||||||||||  |||||||||       
T  18488441 ttgtcagagttgtccg--acatggctcgtatgaatgttatataggtgtc-gacaccggtcctaggagtgtcgaattaaagaaaaaa-tattttatttgat 18488536  T
Q  243 acaccgattttagttgtctgatacgtgccgtacgagtgtcataggaatgtcggacaccg 301  Q
    |||||||| |||||||||||| |  || || || | | |||||||| ||||||||||||    
T  18488537 acaccgatgttagttgtctgacatatgtcgaacaattttcataggagtgtcggacaccg 18488595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 32740930 - 32741058
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttat---------atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactc 93  Q
    ||||||||||||||||| ||||||||||||||||||| ||          |||||||||||| |||| |||||||||||||  |||||||||||||||||    
T  32740930 tttatttattcatctaccatcaaaaaagctaaaaatgataatcaattgtaatgtctataacc-cccaattgatcaacatttcacaaaacatatgtaactc 32741028  T
Q  94 ttgtatctacggaatgtggaagcaagagag 123  Q
    ||||||||| ||  ||||||||||||||||    
T  32741029 ttgtatctatggtgtgtggaagcaagagag 32741058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 48632664 - 48632360
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttat-----------atgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    ||||||||||| ||||||||||||||||||||||| ||| |           || ||||||||| |  | ||||||||||||| |||| ||||||| |||    
T  48632664 tttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaactttaatttctataaccccgtaattgatcaacatttctcaacacatatgcaac 48632565  T
Q  92 tcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtc 191  Q
    ||||||||||||||  ||| ||| |||||||        ||||||||| ||| || | ||||||| |  ||| ||||| | | |||||  ||||||||||    
T  48632564 tcttgtatctacggtgtgtagaaccaagaga-aaaaaaatgtttcagacatttgtttgagttgtctg--acatggctcgtgtgagtgt--tataggtgtc 48632470  T
Q  192 agacaccggtcttaagagtgttgaattaaag-aaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaat 290  Q
     |||||||||| || |||||| |||  |||| |||||||||||||||||||||||||| | ||||||||| ||  |||| | |||||||||||| ||| |    
T  48632469 ggacaccggtc-taggagtgtcgaagcaaagaaaaaaacaattttatttaggacaccggtcttagttgtccgacgcgtgtcatacgagtgtcatgggagt 48632371  T
Q  291 gtcggacaccg 301  Q
    |||||||||||    
T  48632370 gtcggacaccg 48632360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 299
Target Start/End: Complemental strand, 9149079 - 9148775
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttat-----------atgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    |||||||||| ||||||||||||||||||||||||||||||           ||||||||||||  ||| |||||| |||||| |  || |||| |||||    
T  9149079 tttatttatttatctactatcaaaaaagctaaaaatgttatagccaactttaatgtctataacc-accaattgatctacatttct-taatcatacgtaac 9148982  T
Q  92 tcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtc 191  Q
    ||||||||||||    || ||||||||||||        |||||||| |||| | || |||||||||  ||||||||  ||| |||||||||||| | ||    
T  9148981 tcttgtatctacaatttgcggaagcaagagataaaaaaatgtttcagttatt-ggctgagttgtccg--acacggcttgtatcagtgttatatagatctc 9148885  T
Q  192 agacaccggtcttaagagtgttgaatt--aaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaa 289  Q
    ||||||  ||| || |||||||||  |  ||| ||||| | |||||||||| ||||||||| || ||||||||| |||||  || ||||| ||||||||     
T  9148884 agacactagtcctaggagtgttgatctacaaaaaaaaatctattttatttaagacaccgatctttgttgtctgacacgtgttgttcgagtttcataggag 9148785  T
Q  290 tgtcggacac 299  Q
    | ||||||||    
T  9148784 tatcggacac 9148775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 18476588 - 18476623
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaat 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  18476588 tttatttattcatctactatcaaaaaagctaaaaat 18476623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23431946 - 23431989
Alignment:
Q  1 catttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  23431946 cattcatttattcatctactatcaaaaaagttaaaaatgttata 23431989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 126384 - 126435
Alignment:
Q  44 atgtctataacctccc-agttgatcaacatttttcaaaacatatgtaactct 94  Q
    |||||||||||| ||| | ||||||||||||| |||||||||||||||||||    
T  126384 atgtctataacccccctaattgatcaacatttctcaaaacatatgtaactct 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 23432096 - 23432180
Alignment:
Q  137 agatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaaga 223  Q
    |||||||  ||| |||||||||||||  ||||| ||| ||||||||||| ||||| |||||||||| || |||||  ||||||||||    
T  23432096 agatatttatctgagttgtccgacac--ggctcgtatgagtgttatataagtgtcggacaccggtcctaggagtgccgaattaaaga 23432180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 127899 - 127999
Alignment:
Q  193 gacaccggtcttaagagtgttgaattaaagaaaa--aacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaat 290  Q
    ||||| ||| ||| || ||||||| |||||||||  |||||||||||||||||||||| | ||| ||||| || ||||| ||||  ||||| |||| |||    
T  127899 gacactggttttaggaatgttgaagtaaagaaaaaaaacaattttatttaggacaccggtcttatttgtccgacacgtgtcgtaatagtgttatagaaat 127998  T
Q  291 g 291  Q
    |    
T  127999 g 127999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 23432190 - 23432259
Alignment:
Q  232 ttttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcataggaatgtcggacaccg 301  Q
    ||||||||| || |||||||||||||||  || ||||| || || | |||||||||| ||||||||||||    
T  23432190 ttttatttaagataccgattttagttgttcgacacgtgtcggacaaatgtcataggagtgtcggacaccg 23432259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 57082 - 57280
Alignment:
Q  8 ttattcatctactatcaaaaaagctaaaaatgttata-----------tgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttg 96  Q
    ||||||||||||||||||||||| |||||||||||||           |||||||||||  | ||||||||||||||| || ||||||||||||||||||    
T  57082 ttattcatctactatcaaaaaaggtaaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctccaaacatatgtaactcttg 57181  T
Q  97 tatctacggaatgtggaagcaagagag-nnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagac 195  Q
    ||||||||| |||||||||||||||||        |  || |||||||  |||||||||||||  ||||||||| ||| ||||||| |||||||||||||    
T  57182 tatctacggtatgtggaagcaagagagaaaaataataatttagatatttatcttagttgtccg--acacggctcgtatgagtgttacataggtgtcagac 57279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 12843984 - 12844238
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata-----------tgtctataacctcccagttgatcaacatttttcaaaacatatgtaac 91  Q
    ||||||||||||||||||||||||||||||||||||| ||||           ||| ||||||| || | ||||||||||||| ||||||||||||||||    
T  12843984 tttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtgtataacc-cctaattgatcaacatttctcaaaacatatgtaac 12844082  T
Q  92 tcttgtatctacggaatgtggaagcaagagag--nnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtg 189  Q
    ||||||||||| ||   |||||||||||||||         ||||| ||||||  || | ||||||| ||||||  |||| ||| ||||||||||| |||    
T  12844083 tcttgtatctatggtgcgtggaagcaagagagaaaaaatattgttttagatatctgtgtgagttgtctgacaca--gctcgtatgagtgttatataagtg 12844180  T
Q  190 tcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccg 248  Q
    ||||||| || ||||| |||||| ||| |||||||||||| |  |||||||||||||||    
T  12844181 tcagacatcgatcttaggagtgtcgaagtaaagaaaaaacca-attatttaggacaccg 12844238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 1255745 - 1255434
Alignment:
Q  1 catttatttattcatctactatcaaaaaagctaaaaatgttata-----------tgtctataacctcccagttgatcaacatttttcaaaacatatgta 89  Q
    |||||||||||  |||| ||||||||||||||||||||||||||           ||||||||||| || | ||||||||||||  ||||||| ||||||    
T  1255745 catttatttatgtatctgctatcaaaaaagctaaaaatgttataatcaactgtaatgtctataaccccctaattgatcaacattcctcaaaacctatgta 1255646  T
Q  90 actcttgtatctacggaatgtggaagcaagagagnnnnnnn-tgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggt 188  Q
     ||||||||||||     ||||||||||||||||        |||||  |||||| |||| ||||| ||   |||| |||| |||  |||||||||||||    
T  1255645 gctcttgtatctattatttgtggaagcaagagagaaaaataatgtttt-gatatttgtctgagttgcccct-acacagctcgtatgcgtgttatataggt 1255548  T
Q  189 gtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgtacgagtgtcatagga 288  Q
    |||||| ||  ||  || |||||| ||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||| | ||||||||||| | ||    
T  1255547 gtcagatactagttctaggagtgtcgaattaaagaaaaaataactttatttaagacgccgattttagttgtctgacacgtgtcatacgagtgtcacatga 1255448  T
Q  289 atgtcggacaccgt 302  Q
     ||| |||||||||    
T  1255447 gtgttggacaccgt 1255434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 17540167 - 17540303
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag-nnnnnnntgtttcagatattcgtcttagttgtccgac 160  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||  || |||||||||||||        ||||| ||||||| |||| |||||||||      
T  17540167 ttgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaattgttttagatatttgtctgagttgtccg-- 17540264  T
Q  161 acacggctcatataagtgttatataggtgtcagacaccg 199  Q
    |||||| |||||| |||||||||||||||||||| ||||    
T  17540265 acacggttcatatgagtgttatataggtgtcagataccg 17540303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 228
Target Start/End: Complemental strand, 14494468 - 14494286
Alignment:
Q  44 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag-nnnnnnntgtttcagatat 142  Q
    |||||||||||| || | ||||||||||||| ||||||||||||||| ||||||||||| ||  ||||||| ||| ||||        ||||| ||||||    
T  14494468 atgtctataacc-cctaattgatcaacatttctcaaaacatatgtaattcttgtatctatggtgtgtggaaacaatagagaaaacaattgtttaagatat 14494370  T
Q  143 tcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa 228  Q
    | || | |||||||||  ||||||||| ||| ||||||||||||||||| ||||||| |  || |||||| ||| |||||||||||    
T  14494369 ttgtgtgagttgtccg--acacggctcgtattagtgttatataggtgtcggacaccgattgtaggagtgtcgaagtaaagaaaaaa 14494286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 19294577 - 19294644
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa 228  Q
    ||||||||| ||| ||||||||| ||||||| ||||||| || ||||||||| ||| |||||||||||    
T  19294577 acacggctcgtatgagtgttatacaggtgtcggacaccgatcgtaagagtgtcgaagtaaagaaaaaa 19294644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 17540098 - 17540139
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  17540098 tttatttatttatctactatcaaaaaagctaaaaatgatata 17540139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 34011121 - 34011035
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaa-aaaacaattttatttaggacaccg 248  Q
    ||||||||| ||| ||||||||||||||||| ||||||  || || |||||| ||| ||||||| |||||||  |||||||||||||||    
T  34011121 acacggctcgtatgagtgttatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaa--ttatttaggacaccg 34011035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 34013729 - 34013815
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaag-aaaaaacaattttatttaggacaccg 248  Q
    ||||||||| ||| ||||||||||||||||| ||||||  || || |||||| ||| ||||| |||||||||  |||||||||||||||    
T  34013729 acacggctcgtatgagtgttatataggtgtcggacaccaatcgtaggagtgtcgaagtaaagaaaaaaacaa--ttatttaggacaccg 34013815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 34709102 - 34709163
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||||||||||||||| |||| |||||||| |||||| ||  |||| |||||||||||    
T  34709102 ttgatcaacatttttcaaaatatatataactcttatatctatggcgtgtgaaagcaagagag 34709163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 19294463 - 19294497
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaa 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  19294463 tttatttattcatctactatgaaaaaagctaaaaa 19294497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 19542292 - 19542350
Alignment:
Q  66 tcaacatttttcaaaacatatgtaactcttgtatctacgg-aatgtggaagcaagagag 123  Q
    |||| |||| |||||||| ||||||||||||||| |||||  |||||||||||||||||    
T  19542292 tcaatatttctcaaaacaaatgtaactcttgtatgtacggttatgtggaagcaagagag 19542350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 19542219 - 19542260
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttata 44  Q
    ||||||||||||||||||||||| || ||||||| |||||||    
T  19542219 tttatttattcatctactatcaagaatgctaaaattgttata 19542260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 248
Target Start/End: Complemental strand, 34409610 - 34409410
Alignment:
Q  44 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatatt 143  Q
    |||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||| ||  || |||| ||||||||       ||||| ||||| |    
T  34409610 atgtctataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaatcaagagagagaaaattgttttagatagt 34409512  T
Q  144 cgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaag-aaaaaacaattttatttagg 242  Q
     || | |||||| | |||||   ||| ||| ||||||||||||||||| ||||||| || || | |||| ||| ||||| |||||||||  |||||||||    
T  34409511 tgtttgagttgttcaacaca--actcgtatgagtgttatataggtgtcggacaccgatcataggcgtgtcgaagtaaagaaaaaaacaa--ttatttagg 34409416  T
Q  243 acaccg 248  Q
    ||||||    
T  34409415 acaccg 34409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 9929782 - 9929857
Alignment:
Q  44 atgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaaga 120  Q
    |||||||||||| || | ||||||||||||| ||||||||||||||||||||||||||| ||  |||||||||||||    
T  9929782 atgtctataacc-cctatttgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgtggaagcaaga 9929857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 44649877 - 44649768
Alignment:
Q  175 agtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggacaccgattttagttgtctgatacgtgccgta 274  Q
    |||||| |||| ||||  ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||| ||  ||||| ||||  |||||||    
T  44649877 agtgttgtatatgtgtgggacaccggtct-aagagtgtcgaagtaaagaaaaaacaattttatttaggacatcgatcttgattgtccgatatatgccgta 44649779  T
Q  275 cgagtgtcata 285  Q
    | ||| |||||    
T  44649778 caagtatcata 44649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 26576213 - 26576272
Alignment:
Q  64 gatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    ||||||||||| ||||||||||||||||||||||||||| ||  || |||||||||||||    
T  26576213 gatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagag 26576272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 15989981 - 15989817
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaac-aattttatttaggacaccgattttagttgt 259  Q
    ||||||||| ||| | ||||||||| ||||||||||||| | | | |||||| ||  ||||| |||||  |||||||||||||||| || | ||||||||    
T  15989981 acacggctcgtatgactgttatataagtgtcagacaccgatgt-aggagtgtcgatgtaaaggaaaaattaattttatttaggacatcggtcttagttgt 15989883  T
Q  260 ctgatacgtgccgtacgagtgtcataggaatgtcggacaccgtaacacggttggttcaagaggtgt 325  Q
    | || | ||| |||| ||||||||||||| ||| |||||| | ||||||  | || ||||||||||    
T  15989882 ccgacatgtgtcgtaagagtgtcataggagtgttggacactgcaacacgtctagtccaagaggtgt 15989817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 27004188 - 27004249
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagag 123  Q
    |||||||||||||||||||||||||  |||||||||||||| || ||||| |||||| ||||    
T  27004188 ttgatcaacatttttcaaaacatatacaactcttgtatctatggcatgtgaaagcaaaagag 27004249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 13039029 - 13039089
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagaga 122  Q
    ||||||||||||| ||| ||||||||||||||||||||||| ||  || ||||||||||||    
T  13039029 ttgatcaacatttctcataacatatgtaactcttgtatctatggtgtgcggaagcaagaga 13039089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 17651477 - 17651562
Alignment:
Q  137 agatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaa 224  Q
    ||||||| |||| ||||||||||||| |  ||||||||||||||||||| ||||| ||||||||||  | |||||| ||| |||||||    
T  17651477 agatatttgtctaagttgtccgacacgc--ctcatataagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaagaa 17651562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 32200904 - 32200670
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgttatatgtctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatcta 102  Q
    ||||||||||||||||||||||||||||||||||| |         |||||||    | ||||||| ||||| ||||||||||||||||||||||||| |    
T  32200904 tttatttattcatctactatcaaaaaagctaaaaacg--------atataacc-attaattgatcagcatttctcaaaacatatgtaactcttgtatcca 32200814  T
Q  103 cggaatgtggaagca--agagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccgg 200  Q
     ||  || |||||||  ||||||       ||||| |||||||  ||| |||||||||  ||||||||| ||| | ||||||||||||||  | |||||     
T  32200813 tggcgtgcggaagcaagagagagaaaaaattgttttagatatttttctgagttgtccg--acacggctcgtatgactgttatataggtgttgggcaccga 32200716  T
Q  201 tcttaagagtgttgaattaaagaaaaaa-caattttatttaggacacc 247  Q
    || || |||||| ||| ||||||||||| |||  ||||||||||||||    
T  32200715 tcgtaggagtgtcgaagtaaagaaaaaatcaa--ttatttaggacacc 32200670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 44650048 - 44650010
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatgtt 41  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  44650048 tttatttattcatctactatcaaaaaagttaaaaatgtt 44650010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 300
Target Start/End: Complemental strand, 4748080 - 4747855
Alignment:
Q  74 tttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagnnnnnnntgtttcagatattcgtcttagttgtccgacacacggctcatat 173  Q
    ||||| |||| |||||||||||| ||||||||  ||||||||||| || |        |||||||| ||| |||| |||||||||| |   ||||| |||    
T  4748080 tttcacaacacatgtaactcttggatctacggtgtgtggaagcaatagtgaaaaaaaagtttcagacatttgtctcagttgtccgagat--ggctcgtat 4747983  T
Q  174 aagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaa-aacaattttatttaggacaccgattttagttgtctgatacgtgccg 272  Q
     ||||||||||||||||| ||||  |||   |  ||||| ||| ||||| ||  ||||||||||||| ||| ||     ||||||||| || || |||||    
T  4747982 gagtgttatataggtgtcggacattggtgcaataagtgtcgaagtaaaggaatgaacaattttatttgggatacttgccttagttgtccgacacatgccg 4747883  T
Q  273 tacgagtgtcataggaatgtcggacacc 300  Q
    ||| |||||||||||| |||||||||||    
T  4747882 tacaagtgtcataggattgtcggacacc 4747855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 18724684 - 18724592
Alignment:
Q  134 ttcagatattcgtcttagttgtccgacacacggctcatataagtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaa 228  Q
    |||||||||| |||| ||||||| ||||| |  ||| | |||||| |||||||||||||||||| ||||| | |||||| ||| |||||| ||||    
T  18724684 ttcagatatttgtctgagttgtctgacacgc--ctcttttaagtgatatataggtgtcagacactggtctaaggagtgtcgaagtaaagagaaaa 18724592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 26576142 - 26576176
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaa 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  26576142 tttatttattcatctactatcaaataagctaaaaa 26576176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 15990095 - 15990038
Alignment:
Q  47 tctataacctcccagttgatcaacatttttcaaaacatatgtaactcttgtatctacg 104  Q
    ||||||||| || | ||| ||||||||| |||| ||||||||||||||| ||||||||    
T  15990095 tctataacccccaaattggtcaacatttctcaacacatatgtaactcttatatctacg 15990038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 41849246 - 41849283
Alignment:
Q  161 acacggctcatataagtgttatataggtgtcagacacc 198  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  41849246 acacgcctcatataagtgttatataggtgtcggacacc 41849283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 9929712 - 9929748
Alignment:
Q  3 tttatttattcatctactatcaaaaaagctaaaaatg 39  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  9929712 tttatttattcatctactatcaaaaatgctcaaaatg 9929748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 12273945 - 12273917
Alignment:
Q  169 catataagtgttatataggtgtcagacac 197  Q
    |||||||||||||||||||||||||||||    
T  12273945 catataagtgttatataggtgtcagacac 12273917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 26542261 - 26542293
Alignment:
Q  208 agtgttgaattaaagaaaaaacaattttattta 240  Q
    ||||| |||||||||||||||||||||||||||    
T  26542261 agtgtcgaattaaagaaaaaacaattttattta 26542293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 289083 - 289152
Alignment:
Q  175 agtgttatataggtgtcagacaccggtcttaagagtgttgaattaaagaaaaaacaattttatttaggac 244  Q
    ||||||||||||||||| ||||||||| | | |||||| | | |||||||||||||||| ||||||||||    
T  289083 agtgttatataggtgtcggacaccggtgtaaggagtgtcggagtaaagaaaaaacaattgtatttaggac 289152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12957 - 12993
Alignment:
Q  1 catttatttattcatctactatcaaaaaagctaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  12957 catttatttattcatctactatcaaaaaagctaaaaa 12993  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 70082 - 70040
Alignment:
Q  62 ttgatcaacatttttcaaaacatatgtaactcttgtatctacg 104  Q
    ||||||||||||| |||| |||||||||| |||||||||||||    
T  70082 ttgatcaacatttctcaacacatatgtaattcttgtatctacg 70040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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