View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14825_low_8 (Length: 311)

Name: NF14825_low_8
Description: NF14825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14825_low_8
NF14825_low_8
[»] chr8 (2 HSPs)
chr8 (5-43)||(43295992-43296030)
chr8 (4-34)||(40372254-40372284)
[»] chr5 (4 HSPs)
chr5 (1-46)||(22012586-22012631)
chr5 (4-43)||(884876-884915)
chr5 (4-43)||(19216389-19216428)
chr5 (5-43)||(884982-885020)
[»] chr4 (5 HSPs)
chr4 (4-52)||(35820514-35820562)
chr4 (4-43)||(3435253-3435292)
chr4 (1-48)||(41553988-41554035)
chr4 (7-49)||(3435142-3435184)
chr4 (4-34)||(35820618-35820648)
[»] chr3 (7 HSPs)
chr3 (4-48)||(53739546-53739590)
chr3 (7-49)||(39009827-39009869)
chr3 (5-43)||(39009916-39009954)
chr3 (7-46)||(19227260-19227299)
chr3 (4-43)||(30675082-30675121)
chr3 (4-43)||(53739441-53739480)
chr3 (5-41)||(43493900-43493936)
[»] chr2 (5 HSPs)
chr2 (4-43)||(23962271-23962310)
chr2 (1-43)||(23962373-23962415)
chr2 (5-43)||(25312460-25312498)
chr2 (1-39)||(43341131-43341169)
chr2 (1-34)||(43341229-43341262)
[»] chr6 (5 HSPs)
chr6 (1-43)||(3673872-3673914)
chr6 (6-47)||(17182647-17182688)
chr6 (5-48)||(3673765-3673808)
chr6 (4-34)||(7358962-7358992)
chr6 (1-43)||(33122955-33122997)
[»] chr1 (3 HSPs)
chr1 (1-39)||(47507566-47507604)
chr1 (5-43)||(29070615-29070653)
chr1 (1-49)||(47507667-47507714)
[»] scaffold1266 (1 HSPs)
scaffold1266 (1-40)||(131-170)
[»] scaffold0014 (1 HSPs)
scaffold0014 (4-43)||(133240-133279)
[»] chr7 (2 HSPs)
chr7 (6-34)||(8269964-8269992)
chr7 (15-43)||(31741921-31741949)


Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 43295992 - 43296030
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43295992 taaaaagtgaaaagttgcttacatttgagatcggaggga 43296030  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 40372284 - 40372254
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgaga 34  Q
    |||||||||||||||||||||||||||||||    
T  40372284 ctaaaaagtgaaaagttgcttacatttgaga 40372254  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22012631 - 22012586
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggagggaata 46  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||    
T  22012631 aatctaaaaagtgaaaagtttcttacatttgagattggagggaata 22012586  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 884915 - 884876
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  884915 ctaaaaagtgaaaagtttcttatatttgagatcggaggga 884876  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 19216389 - 19216428
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  19216389 ctaaaaagtgaaaagttgcttacatttgagaccagaggga 19216428  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 884982 - 885020
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  884982 taaaaaatgaaaagtttcttacatttgagatcggaggga 885020  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 35820562 - 35820514
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggagggaatagttctt 52  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  35820562 ctaaaaagtgaaaagttgcttacatttgagaccggaggaaataattctt 35820514  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 3435253 - 3435292
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  3435253 ctaaaaagtgaaaagttgcttacatttgagaccggaggga 3435292  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41554035 - 41553988
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagt 48  Q
    ||||||||||||||||| |||||||||||| ||| |||||||| ||||    
T  41554035 aatctaaaaagtgaaaatttgcttacattttagaccggagggagtagt 41553988  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 3435184 - 3435142
Alignment:
Q  7 aaaagtgaaaagttgcttacatttgagatcggagggaatagtt 49  Q
    ||||||||||||||||||||||||||||  ||||||| |||||    
T  3435184 aaaagtgaaaagttgcttacatttgagactggagggagtagtt 3435142  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 35820618 - 35820648
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgaga 34  Q
    |||||||||||||||||||||||||||||||    
T  35820618 ctaaaaagtgaaaagttgcttacatttgaga 35820648  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 53739546 - 53739590
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggagggaatagt 48  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  53739546 ctaaaaagtgaaaagttgcttacatttgagaccggagggagtagt 53739590  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 39009869 - 39009827
Alignment:
Q  7 aaaagtgaaaagttgcttacatttgagatcggagggaatagtt 49  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  39009869 aaaagtgaaaagttgcttacatttgagaccggagggagtagtt 39009827  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 39009916 - 39009954
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  39009916 taaaaagtgaaaagttgcttacatttgagaccggaggga 39009954  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 19227260 - 19227299
Alignment:
Q  7 aaaagtgaaaagttgcttacatttgagatcggagggaata 46  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  19227260 aaaagtgaaaagttgcttacatttgaaatcagagggaata 19227299  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 30675121 - 30675082
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  30675121 ctaaaaagtgaaaagtttcttacatttgagaccggaggga 30675082  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 53739480 - 53739441
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  53739480 ctaaaaagtaaaaagttgcttacatttgagaccggaggga 53739441  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 43493900 - 43493936
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggagg 41  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  43493900 taaaaagtgaaaagttgtttacatttgagaccggagg 43493936  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 23962310 - 23962271
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  23962310 ctaaaaagtgaaaagttgcttacatttgagaccggaggga 23962271  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23962373 - 23962415
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    |||||||||||| |||||||||||||| |||||| ||||||||    
T  23962373 aatctaaaaagtaaaaagttgcttacaattgagaccggaggga 23962415  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 25312498 - 25312460
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  25312498 taaaaagtgaaaaattgcttacatttgagaccggaggga 25312460  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43341169 - 43341131
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcgga 39  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  43341169 aatctaaaaagtaaaaagttgcttacgtttgagatcgga 43341131  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43341229 - 43341262
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgaga 34  Q
    |||||||||||| |||||||||||||||||||||    
T  43341229 aatctaaaaagtaaaaagttgcttacatttgaga 43341262  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3673872 - 3673914
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  3673872 aatctaaaaagtgaaaagtcgcttacatttgagaccggaggga 3673914  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 17182647 - 17182688
Alignment:
Q  6 aaaaagtgaaaagttgcttacatttgagatcggagggaatag 47  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  17182647 aaaaagtgaaaagttgcttacatttcagaccggagggaatag 17182688  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 3673808 - 3673765
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggagggaatagt 48  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||    
T  3673808 taaaaaatgaaaagtcgcttacatttgagatcggagggagtagt 3673765  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Original strand, 7358962 - 7358992
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgaga 34  Q
    |||||||||||||||||||||||||||||||    
T  7358962 ctaaaaagtgaaaagttgcttacatttgaga 7358992  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33122955 - 33122997
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    ||||||||||||||||| || ||||||||| ||||||||||||    
T  33122955 aatctaaaaagtgaaaaatttcttacatttaagatcggaggga 33122997  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47507604 - 47507566
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcgga 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  47507604 aatctaaaaagtgaaaaattgcttacatttgagatcgga 47507566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 29070653 - 29070615
Alignment:
Q  5 taaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  29070653 taaaaagtaaaaagttgcttacatttgagaccggaggga 29070615  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47507667 - 47507714
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagtt 49  Q
    ||||||||||||||||| |||||||||||| ||| |||||||| |||||    
T  47507667 aatctaaaaagtgaaaaattgcttacatttaaga-cggagggagtagtt 47507714  T

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Target: scaffold1266 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 170 - 131
Alignment:
Q  1 aatctaaaaagtgaaaagttgcttacatttgagatcggag 40  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  170 aatctaaaaagtgaaaaattggttacatttgagatcggag 131  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 133240 - 133279
Alignment:
Q  4 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 43  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  133240 ctaaaaagtgaaaaattgcttacatttgagaccggaggga 133279  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 8269964 - 8269992
Alignment:
Q  6 aaaaagtgaaaagttgcttacatttgaga 34  Q
    |||||||||||||||||||||||||||||    
T  8269964 aaaaagtgaaaagttgcttacatttgaga 8269992  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 31741949 - 31741921
Alignment:
Q  15 aaagttgcttacatttgagatcggaggga 43  Q
    |||||||||||||||||||||||||||||    
T  31741949 aaagttgcttacatttgagatcggaggga 31741921  T

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