View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14826_low_1 (Length: 416)
Name: NF14826_low_1
Description: NF14826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14826_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 6254746 - 6255135
Alignment:
| Q |
18 |
ggaggtcagtggaagaggctggtcgaaggtcgaagagttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaacaacactctttacc |
117 |
Q |
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| T |
6254746 |
ggaggtcagtggaagaggctggtcgaaggtcgaagagttaagcatggtgcatacatgattgttcgtgctccaacggctggaaacaacatcactctttacc |
6254845 |
T |
|
| Q |
118 |
taagtcttaaatgtctttgaattgtttgatgtgtgagactggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgta |
217 |
Q |
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| T |
6254846 |
taagtcttaaatgtctttgaattgtttgatgtgtgagattggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgta |
6254945 |
T |
|
| Q |
218 |
atgtcattgctataagttctataatagttttaatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttgtcaagta |
317 |
Q |
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| T |
6254946 |
atgtcattgctataagttctataatagttttaatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttggcaagta |
6255045 |
T |
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| Q |
318 |
gtgtgaatgagatattttgattatgtttcatgaaatatccaccttaaagtataattattgtcgacttttttgagttagtgcttcttcgtt |
407 |
Q |
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| T |
6255046 |
gtctgaatgagatattttgattatgtttcatgaaatatccaccttaaagtataattattgtcgacttttttgcgttagtgcttcttcgtt |
6255135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 10599517 - 10599115
Alignment:
| Q |
18 |
ggaggtcagtggaagaggctggtcgaaggtcgaagagttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaacaacactctttacc |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599517 |
ggaggtcagtggaagaggctggtcgaagctcgaagagttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaacaacactctttacc |
10599418 |
T |
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| Q |
118 |
taagtcttaaatgtctttgaattgtttgatgtgt-------------gagactggaatttcaagtgctttctatcaaattaatcttagtattttagtcca |
204 |
Q |
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| T |
10599417 |
taagtcttcaacgtctttgaatagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtcca |
10599318 |
T |
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| Q |
205 |
agtgaaatatgtaatgtcattgctataagttctataatagttttaatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatca |
304 |
Q |
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| T |
10599317 |
agtgaaatatgtaatgtcattgctataagttctataatagttttaatatttttatgttagtttt-aagttttttgaacttttaatcaaacttatttatca |
10599219 |
T |
|
| Q |
305 |
gacttgtcaagtagtgtgaatgagatattttgattatgtttcatgaaatatccaccttaaagtataattattgtcga-cttttttgagttagtgcttctt |
403 |
Q |
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|||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10599218 |
gacttggcaagtagtgtgaatgagatttttttattatgtttcatgaaatatccaccttaaagtataattattgtcgattttttttgagttagtgcttctt |
10599119 |
T |
|
| Q |
404 |
cgtt |
407 |
Q |
| |
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|||| |
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|
| T |
10599118 |
cgtt |
10599115 |
T |
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