View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14826_low_2 (Length: 368)
Name: NF14826_low_2
Description: NF14826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14826_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 47076723 - 47076387
Alignment:
| Q |
18 |
aaaccaaccatataataactctgcattttaagcattttatgattaattaagtcatgagttctccctatactgnnnnnnncaatgagaatttcactataaa |
117 |
Q |
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| T |
47076723 |
aaaccaaccatataataactctgcattttaagcattttatgattaattaagtcatgagttctccctatactgtttttttcaatcagaatttcactataaa |
47076624 |
T |
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| Q |
118 |
ttgttttagattggggtataatacagggcctacttatagcctgctaaattcttgaaagaaaaaacttcagcattagggtcttttagtttgcaataaaaag |
217 |
Q |
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| T |
47076623 |
ttgttttagattggggtaaaatacagggcctacttatagcctgctaaattcttgaaagaaaaaacttcagcattagggtcttttagtttgcaataaaaag |
47076524 |
T |
|
| Q |
218 |
ttgtaatggtatttgtgaagtttatatatttgaaaactgaaagtttgaatgttatgttacttcatgcagacactgaaactgagtgatcaggatttccttg |
317 |
Q |
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| T |
47076523 |
ttgtaatggtatctgtgaagtttatatatttgaaaactgaaagtttgaatgttatgttacttcatgcagacactgaaactgagtgatcaggatttccttg |
47076424 |
T |
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| Q |
318 |
gagaggcgagttgcactttatcagaggtcagtataat |
354 |
Q |
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| T |
47076423 |
gagaggcgagttgcactttatcagaggtcagtataat |
47076387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 119 - 351
Target Start/End: Original strand, 18229528 - 18229763
Alignment:
| Q |
119 |
tgttttagattggggtataatacagggcctacttatagcctgctaaattcttgaaagaaaaaacttcagcattagggtctttt-agtttgcaataaaaag |
217 |
Q |
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| T |
18229528 |
tgttttagattcgggtataatacaaggctaacttgcagcctgctaaactcttgatagaaaaaacttcaactatagggtatttttagtttggaataaaaag |
18229627 |
T |
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| Q |
218 |
ttgtaatggtatttgtgaagtttatatatttgaaaactgaaagtttgaat--gttatgttacttcatgcagacactgaaactgagtgatcaggatttcct |
315 |
Q |
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|| ||||| | |||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||| || ||||||| |||||| || ||||| |
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| T |
18229628 |
ccgtgatggtgtcggtgaagtttatatatttgaaaatcgaatgtttgaatatgttacgttacttcatgcagactctaaaactgaatgatcaagaattcct |
18229727 |
T |
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| Q |
316 |
tggagaggcgagttgcactttatcagaggtcagtat |
351 |
Q |
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| T |
18229728 |
tggagaggcaagttgcactttatcagaggtcagtat |
18229763 |
T |
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